Wall clock time and date at job start Tue Mar 31 2020 03:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47045 * 2 1 4 4 H 1.09002 * 109.47004 * 305.10623 * 3 2 1 5 5 N 1.46899 * 109.47298 * 65.10395 * 3 2 1 6 6 C 1.46904 * 111.00060 * 260.01202 * 5 3 2 7 7 C 1.53002 * 109.46749 * 178.19088 * 6 5 3 8 8 H 1.08999 * 109.47334 * 304.99592 * 7 6 5 9 9 C 1.47195 * 109.47344 * 65.00262 * 7 6 5 10 10 N 6.11299 * 93.93399 * 31.57100 * 2 1 3 11 11 C 1.53006 * 109.46482 * 185.00209 * 7 6 5 12 12 C 1.50706 * 109.46868 * 175.00366 * 11 7 6 13 13 H 1.08005 * 119.99859 * 359.97438 * 12 11 7 14 14 C 1.37876 * 120.00076 * 179.97438 * 12 11 7 15 15 N 1.31516 * 119.99967 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99882 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47422 * 90.00594 * 16 14 12 18 18 H 1.48510 * 109.47213 * 210.00287 * 16 14 12 19 19 H 1.48495 * 109.47679 * 330.00082 * 16 14 12 20 20 C 1.52994 * 109.47292 * 185.10669 * 3 2 1 21 21 C 1.53178 * 109.54336 * 299.81805 * 20 3 2 22 22 C 1.53108 * 109.15729 * 183.24015 * 21 20 3 23 23 O 1.42901 * 109.48354 * 57.47933 * 22 21 20 24 24 C 1.42908 * 114.09909 * 298.88486 * 23 22 21 25 25 C 1.53091 * 109.41157 * 61.16087 * 24 23 22 26 26 H 1.08995 * 109.47638 * 298.82334 * 1 2 3 27 27 H 1.09005 * 109.47236 * 58.82637 * 1 2 3 28 28 H 1.09001 * 109.46735 * 178.82342 * 1 2 3 29 29 H 1.08996 * 109.47781 * 239.99800 * 2 1 3 30 30 H 1.08996 * 109.47301 * 119.99395 * 2 1 3 31 31 H 1.00903 * 111.00024 * 23.96499 * 5 3 2 32 32 H 1.08998 * 109.47258 * 298.18884 * 6 5 3 33 33 H 1.09001 * 109.47229 * 58.19454 * 6 5 3 34 34 H 1.08999 * 109.46890 * 294.99596 * 11 7 6 35 35 H 1.08999 * 109.47645 * 55.00015 * 11 7 6 36 36 H 0.96993 * 120.00088 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.54746 * 59.99983 * 20 3 2 38 38 H 1.08994 * 109.52365 * 303.06103 * 21 20 3 39 39 H 1.09003 * 109.51958 * 63.25216 * 21 20 3 40 40 H 1.08997 * 109.40876 * 297.49897 * 22 21 20 41 41 H 1.08998 * 109.47947 * 177.50654 * 22 21 20 42 42 H 1.08996 * 109.48084 * 301.18026 * 24 23 22 43 43 H 1.08998 * 109.47960 * 181.14535 * 24 23 22 44 44 H 1.08999 * 109.51883 * 182.48368 * 25 24 23 45 45 H 1.08994 * 109.52387 * 62.29879 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 -0.8407 5 7 1.6535 2.0986 1.2563 6 6 0.4661 2.9424 1.0660 7 6 0.0682 3.5717 2.4026 8 1 -0.0708 2.7872 3.1465 9 6 1.1299 4.4884 2.8487 10 7 1.9494 5.1960 3.1929 11 6 -1.2383 4.3493 2.2312 12 6 -1.6948 4.8661 3.5713 13 1 -1.1115 4.6601 4.4567 14 6 -2.8569 5.6018 3.6670 15 7 -3.5673 5.8522 2.5890 16 14 -3.4229 6.2417 5.3282 17 1 -2.8444 7.5890 5.5630 18 1 -4.9053 6.3296 5.3458 19 1 -2.9694 5.3152 6.3964 20 6 3.5645 1.4445 -0.1284 21 6 4.1793 0.6905 1.0548 22 6 5.7056 0.7672 0.9609 23 8 6.1136 2.1365 0.9383 24 6 5.6073 2.8779 -0.1735 25 6 4.0772 2.8880 -0.1241 26 1 -0.3634 0.4954 0.9003 27 1 -0.3634 0.5320 -0.8793 28 1 -0.3633 -1.0275 -0.0211 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.5012 1.4195 1.9869 32 1 0.6913 3.7296 0.3465 33 1 -0.3566 2.3329 0.6921 34 1 -1.0757 5.1882 1.5546 35 1 -2.0015 3.6907 1.8166 36 1 -4.3851 6.3694 2.6564 37 1 3.8526 0.9580 -1.0602 38 1 3.8497 1.1465 1.9882 39 1 3.8632 -0.3523 1.0260 40 1 6.0376 0.2739 0.0474 41 1 6.1483 0.2702 1.8241 42 1 5.9380 2.4122 -1.1018 43 1 5.9793 3.9015 -0.1276 44 1 3.6882 3.4153 -0.9951 45 1 3.7454 3.3897 0.7848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746400912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:59 Heat of formation + Delta-G solvation = -51.440317 kcal Electronic energy + Delta-G solvation = -22621.543608 eV Core-core repulsion = 19444.790352 eV Total energy + Delta-G solvation = -3176.753256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.79386 -37.86478 -36.20044 -33.99256 -33.05275 -32.32675 -31.09686 -30.56110 -27.51393 -25.81112 -23.96071 -23.23535 -22.59629 -21.82347 -20.89501 -19.51873 -17.03884 -16.43962 -16.21204 -16.01496 -15.54582 -15.08657 -14.79599 -14.60371 -14.35139 -13.80599 -13.64686 -13.49892 -13.21578 -12.69118 -12.54591 -12.30027 -12.06240 -11.95269 -11.78301 -11.53423 -11.42444 -11.27905 -11.19553 -11.10219 -11.05701 -10.92580 -10.65500 -10.49434 -10.29937 -10.24841 -10.18825 -9.55393 -9.46569 -9.21189 -8.46048 -8.16777 -6.10007 -4.13036 3.29737 3.36356 3.39632 3.77525 3.86863 3.87371 4.25838 4.42517 4.50977 4.71771 4.87734 4.93588 4.98950 5.03044 5.07561 5.18698 5.22870 5.28341 5.39508 5.45705 5.53290 5.54930 5.63457 5.65500 5.70986 5.73099 5.86074 5.89100 5.93193 6.00800 6.09909 6.12432 6.20644 6.26084 6.41818 6.50280 6.59095 7.17302 7.19085 7.41712 7.51714 7.55321 7.85400 8.23053 8.62137 8.91859 9.52573 11.00908 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.003978 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.480293 B = 7037.036236 C = 7796.356891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.148 4.148 3 C 0.092 3.908 4 H 0.074 0.926 5 N -0.682 5.682 6 C 0.062 3.938 7 C 0.009 3.991 8 H 0.097 0.903 9 C 0.254 3.746 10 N -0.477 5.477 11 C 0.032 3.968 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.072 4.072 21 C -0.149 4.149 22 C 0.061 3.939 23 O -0.383 6.383 24 C 0.061 3.939 25 C -0.145 4.145 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.340 0.660 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.964 -14.392 -8.854 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.187 4.187 3 C -0.018 4.018 4 H 0.092 0.908 5 N -0.313 5.313 6 C -0.067 4.067 7 C -0.013 4.013 8 H 0.115 0.885 9 C -0.063 4.063 10 N -0.154 5.154 11 C -0.006 4.006 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.091 4.091 21 C -0.187 4.187 22 C -0.015 4.015 23 O -0.302 6.302 24 C -0.015 4.015 25 C -0.183 4.183 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.596 -12.630 -8.331 20.341 hybrid contribution -1.712 -0.638 0.426 1.876 sum 11.884 -13.268 -7.905 19.488 Atomic orbital electron populations 1.21919 0.95522 1.01732 1.02537 1.22219 0.96325 0.97772 1.02339 1.21579 0.94446 0.92745 0.93020 0.90759 1.60583 1.37383 1.26160 1.07181 1.22249 0.91013 0.96370 0.97102 1.19210 0.91694 0.94610 0.95777 0.88530 1.28849 0.92315 0.93011 0.92149 1.80996 1.13063 1.11327 1.10013 1.19156 0.88116 0.95215 0.98155 1.21148 1.07758 1.33983 0.93495 0.92531 1.24945 0.96532 0.95874 0.96575 1.69936 1.15679 1.39516 1.27949 0.86602 0.77733 0.79507 0.84293 1.20632 1.21121 1.19749 1.21158 0.94634 0.95911 0.97440 1.22229 0.95466 1.00398 1.00567 1.22549 0.94697 0.83207 1.01090 1.87938 1.72699 1.22128 1.47454 1.22585 0.94102 0.96335 0.88503 1.22142 0.95032 0.97044 1.04077 0.91859 0.92580 0.92842 0.91860 0.91461 0.84088 0.90723 0.92881 0.95637 0.94559 0.92818 0.91911 0.89795 0.91461 0.93941 0.89421 0.93987 0.89313 0.91765 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.85 37.16 0.33 -1.12 16 2 C -0.15 -1.24 4.76 -26.73 -0.13 -1.37 16 3 C 0.09 0.91 1.96 -67.71 -0.13 0.78 16 4 H 0.07 0.78 7.64 -51.93 -0.40 0.38 16 5 N -0.68 -8.06 4.17 -106.72 -0.44 -8.51 16 6 C 0.06 0.87 4.41 -3.82 -0.02 0.85 16 7 C 0.01 0.16 2.34 -93.40 -0.22 -0.06 16 8 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 9 C 0.25 5.24 13.67 -20.76 -0.28 4.96 16 10 N -0.48 -10.82 18.54 42.15 0.78 -10.04 16 11 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 12 C -0.53 -13.93 8.60 -34.44 -0.30 -14.23 16 13 H 0.06 1.50 7.59 -52.48 -0.40 1.10 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 16 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.07 -0.71 2.15 -90.44 -0.19 -0.90 16 21 C -0.15 -1.44 4.87 -26.58 -0.13 -1.57 16 22 C 0.06 0.62 6.84 37.21 0.25 0.87 16 23 O -0.38 -4.98 10.77 -35.23 -0.38 -5.36 16 24 C 0.06 0.69 6.84 37.20 0.25 0.94 16 25 C -0.15 -1.68 5.31 -26.59 -0.14 -1.82 16 26 H 0.06 0.63 6.12 -51.93 -0.32 0.31 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.55 6.69 -51.93 -0.35 0.20 16 31 H 0.34 3.78 7.98 -39.29 -0.31 3.47 16 32 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 33 H 0.05 0.68 5.76 -51.93 -0.30 0.39 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.98 7.48 -51.93 -0.39 0.59 16 39 H 0.07 0.54 6.75 -51.93 -0.35 0.19 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.36 7.52 -51.93 -0.39 0.97 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -30.06 355.75 -7.72 -37.78 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.83 Total: -0.38 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -0.92 Total: -10.42 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 1.07 Total: -43.27 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.38 Total: -5.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.06 -7.72 -37.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746400912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.664 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds