Wall clock time and date at job start Tue Mar 31 2020 03:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47045 * 2 1 4 4 H 1.09002 * 109.47004 * 305.10623 * 3 2 1 5 5 N 1.46899 * 109.47298 * 65.10395 * 3 2 1 6 6 C 1.46904 * 111.00060 * 260.01202 * 5 3 2 7 7 C 1.53002 * 109.46749 * 178.19088 * 6 5 3 8 8 H 1.08999 * 109.47334 * 304.99592 * 7 6 5 9 9 C 1.47195 * 109.47344 * 65.00262 * 7 6 5 10 10 N 6.11299 * 93.93399 * 31.57100 * 2 1 3 11 11 C 1.53006 * 109.46482 * 185.00209 * 7 6 5 12 12 C 1.50706 * 109.46868 * 175.00366 * 11 7 6 13 13 H 1.08005 * 119.99859 * 359.97438 * 12 11 7 14 14 C 1.37876 * 120.00076 * 179.97438 * 12 11 7 15 15 N 1.31516 * 119.99967 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99882 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47422 * 90.00594 * 16 14 12 18 18 H 1.48510 * 109.47213 * 210.00287 * 16 14 12 19 19 H 1.48495 * 109.47679 * 330.00082 * 16 14 12 20 20 C 1.52994 * 109.47292 * 185.10669 * 3 2 1 21 21 C 1.53178 * 109.54336 * 299.81805 * 20 3 2 22 22 C 1.53108 * 109.15729 * 183.24015 * 21 20 3 23 23 O 1.42901 * 109.48354 * 57.47933 * 22 21 20 24 24 C 1.42908 * 114.09909 * 298.88486 * 23 22 21 25 25 C 1.53091 * 109.41157 * 61.16087 * 24 23 22 26 26 H 1.08995 * 109.47638 * 298.82334 * 1 2 3 27 27 H 1.09005 * 109.47236 * 58.82637 * 1 2 3 28 28 H 1.09001 * 109.46735 * 178.82342 * 1 2 3 29 29 H 1.08996 * 109.47781 * 239.99800 * 2 1 3 30 30 H 1.08996 * 109.47301 * 119.99395 * 2 1 3 31 31 H 1.00903 * 111.00024 * 23.96499 * 5 3 2 32 32 H 1.08998 * 109.47258 * 298.18884 * 6 5 3 33 33 H 1.09001 * 109.47229 * 58.19454 * 6 5 3 34 34 H 1.08999 * 109.46890 * 294.99596 * 11 7 6 35 35 H 1.08999 * 109.47645 * 55.00015 * 11 7 6 36 36 H 0.96993 * 120.00088 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.54746 * 59.99983 * 20 3 2 38 38 H 1.08994 * 109.52365 * 303.06103 * 21 20 3 39 39 H 1.09003 * 109.51958 * 63.25216 * 21 20 3 40 40 H 1.08997 * 109.40876 * 297.49897 * 22 21 20 41 41 H 1.08998 * 109.47947 * 177.50654 * 22 21 20 42 42 H 1.08996 * 109.48084 * 301.18026 * 24 23 22 43 43 H 1.08998 * 109.47960 * 181.14535 * 24 23 22 44 44 H 1.08999 * 109.51883 * 182.48368 * 25 24 23 45 45 H 1.08994 * 109.52387 * 62.29879 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 -0.8407 5 7 1.6535 2.0986 1.2563 6 6 0.4661 2.9424 1.0660 7 6 0.0682 3.5717 2.4026 8 1 -0.0708 2.7872 3.1465 9 6 1.1299 4.4884 2.8487 10 7 1.9494 5.1960 3.1929 11 6 -1.2383 4.3493 2.2312 12 6 -1.6948 4.8661 3.5713 13 1 -1.1115 4.6601 4.4567 14 6 -2.8569 5.6018 3.6670 15 7 -3.5673 5.8522 2.5890 16 14 -3.4229 6.2417 5.3282 17 1 -2.8444 7.5890 5.5630 18 1 -4.9053 6.3296 5.3458 19 1 -2.9694 5.3152 6.3964 20 6 3.5645 1.4445 -0.1284 21 6 4.1793 0.6905 1.0548 22 6 5.7056 0.7672 0.9609 23 8 6.1136 2.1365 0.9383 24 6 5.6073 2.8779 -0.1735 25 6 4.0772 2.8880 -0.1241 26 1 -0.3634 0.4954 0.9003 27 1 -0.3634 0.5320 -0.8793 28 1 -0.3633 -1.0275 -0.0211 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.5012 1.4195 1.9869 32 1 0.6913 3.7296 0.3465 33 1 -0.3566 2.3329 0.6921 34 1 -1.0757 5.1882 1.5546 35 1 -2.0015 3.6907 1.8166 36 1 -4.3851 6.3694 2.6564 37 1 3.8526 0.9580 -1.0602 38 1 3.8497 1.1465 1.9882 39 1 3.8632 -0.3523 1.0260 40 1 6.0376 0.2739 0.0474 41 1 6.1483 0.2702 1.8241 42 1 5.9380 2.4122 -1.1018 43 1 5.9793 3.9015 -0.1276 44 1 3.6882 3.4153 -0.9951 45 1 3.7454 3.3897 0.7848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746400912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:58 Heat of formation + Delta-G solvation = -69.071254 kcal Electronic energy + Delta-G solvation = -22622.308143 eV Core-core repulsion = 19444.790352 eV Total energy + Delta-G solvation = -3177.517791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64928 -38.96896 -37.60878 -35.65831 -34.54187 -33.41184 -32.05712 -31.73568 -28.75507 -27.23515 -24.83862 -24.24635 -23.80724 -23.43515 -21.72970 -20.36279 -18.61552 -18.29175 -17.06911 -16.91292 -16.66939 -16.33763 -16.04466 -15.73045 -15.38157 -15.01813 -14.64909 -14.57969 -14.30603 -14.20023 -13.88974 -13.70531 -13.31520 -13.25853 -13.03619 -12.87289 -12.81902 -12.50079 -12.44817 -12.32201 -12.15340 -12.03248 -11.91868 -11.82406 -11.73499 -11.35692 -11.13465 -11.05278 -10.97570 -10.55822 -10.33681 -9.09912 -8.19664 -6.27701 1.39367 1.41972 1.50774 2.10761 2.17692 2.41359 3.06445 3.15864 3.27008 3.40934 3.73507 3.93641 4.08296 4.17991 4.23189 4.30702 4.34499 4.40736 4.47045 4.47911 4.60215 4.67516 4.76909 4.81297 4.84293 4.88369 4.90106 4.93579 5.03273 5.12925 5.15367 5.21738 5.31252 5.32946 5.43223 5.46848 5.51357 5.62336 5.67245 5.79493 6.14809 6.26648 6.37403 6.63712 6.83990 6.96698 7.40962 8.91264 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.003978 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.480293 B = 7037.036236 C = 7796.356891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.139 4.139 3 C 0.095 3.905 4 H 0.070 0.930 5 N -0.688 5.688 6 C 0.078 3.922 7 C 0.020 3.980 8 H 0.117 0.883 9 C 0.265 3.735 10 N -0.515 5.515 11 C 0.039 3.961 12 C -0.538 4.538 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.946 3.054 17 H -0.285 1.285 18 H -0.278 1.278 19 H -0.264 1.264 20 C -0.068 4.068 21 C -0.143 4.143 22 C 0.055 3.945 23 O -0.412 6.412 24 C 0.060 3.940 25 C -0.142 4.142 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.347 0.653 32 H 0.063 0.937 33 H 0.069 0.931 34 H -0.002 1.002 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.314 -16.485 -9.226 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.177 4.177 3 C -0.015 4.015 4 H 0.088 0.912 5 N -0.320 5.320 6 C -0.052 4.052 7 C -0.002 4.002 8 H 0.135 0.865 9 C -0.051 4.051 10 N -0.193 5.193 11 C 0.000 4.000 12 C -0.576 4.576 13 H 0.071 0.929 14 C -0.186 4.186 15 N -0.563 5.563 16 Si 0.772 3.228 17 H -0.211 1.211 18 H -0.203 1.203 19 H -0.188 1.188 20 C -0.087 4.087 21 C -0.181 4.181 22 C -0.021 4.021 23 O -0.332 6.332 24 C -0.016 4.016 25 C -0.180 4.180 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.166 0.834 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.016 0.984 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.954 -14.741 -8.699 22.084 hybrid contribution -1.792 0.012 0.523 1.866 sum 12.162 -14.730 -8.176 20.778 Atomic orbital electron populations 1.21915 0.96014 1.02099 1.01756 1.22135 0.95744 0.96466 1.03390 1.21595 0.94569 0.93671 0.91662 0.91212 1.60507 1.36104 1.26758 1.08582 1.22003 0.92462 0.96503 0.94213 1.19189 0.88579 0.93909 0.98520 0.86546 1.29379 0.92113 0.92554 0.91072 1.80992 1.14413 1.12345 1.11510 1.18974 0.90410 0.94706 0.95891 1.21560 1.07586 1.33665 0.94830 0.92873 1.25690 0.96963 0.96380 0.99609 1.70027 1.16181 1.40459 1.29675 0.85724 0.77595 0.78617 0.80833 1.21135 1.20305 1.18818 1.21158 0.94321 0.94761 0.98457 1.22173 0.95277 1.01371 0.99248 1.22744 0.94932 0.82027 1.02409 1.87898 1.73230 1.23737 1.48332 1.22635 0.93655 0.96358 0.88999 1.22067 0.95534 0.98135 1.02275 0.92948 0.93010 0.91964 0.90377 0.90734 0.83389 0.91823 0.91344 0.98360 0.94669 0.92732 0.89917 0.92118 0.89215 0.92079 0.88708 0.91854 0.89875 0.91471 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 8.85 71.98 0.64 -1.87 16 2 C -0.14 -1.89 4.76 30.59 0.15 -1.75 16 3 C 0.09 1.68 1.96 44.91 0.09 1.77 16 4 H 0.07 1.33 7.64 -2.39 -0.02 1.31 16 5 N -0.69 -15.44 4.17 -491.56 -2.05 -17.49 16 6 C 0.08 2.12 4.41 86.30 0.38 2.50 16 7 C 0.02 0.70 2.34 -12.60 -0.03 0.67 16 8 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 9 C 0.26 11.01 13.67 89.44 1.22 12.23 16 10 N -0.52 -23.70 18.54 20.00 0.37 -23.33 16 11 C 0.04 1.79 4.42 29.85 0.13 1.92 16 12 C -0.54 -28.54 8.60 25.60 0.22 -28.32 16 13 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 14 C 0.01 0.69 5.46 84.65 0.46 1.15 16 15 N -0.92 -53.07 13.29 21.45 0.28 -52.78 16 16 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 17 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 C -0.07 -1.19 2.15 -10.68 -0.02 -1.21 16 21 C -0.14 -2.46 4.87 30.69 0.15 -2.31 16 22 C 0.06 0.99 6.84 72.02 0.49 1.49 16 23 O -0.41 -10.37 10.77 -148.98 -1.60 -11.98 16 24 C 0.06 1.29 6.84 72.01 0.49 1.78 16 25 C -0.14 -3.20 5.31 30.69 0.16 -3.04 16 26 H 0.05 0.93 6.12 -2.39 -0.01 0.91 16 27 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.94 6.69 -2.39 -0.02 0.93 16 31 H 0.35 7.10 7.98 -89.69 -0.72 6.38 16 32 H 0.06 1.88 8.12 -2.39 -0.02 1.86 16 33 H 0.07 1.67 5.76 -2.39 -0.01 1.65 16 34 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.35 7.48 -2.39 -0.02 1.33 16 39 H 0.09 1.14 6.75 -2.39 -0.02 1.12 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.05 1.65 7.52 -2.39 -0.02 1.64 16 Total: -1.00 -64.91 355.75 3.81 -61.11 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.25 Total: 13.86 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 4.53 Total: -14.99 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -1.39 Total: -93.60 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.60 Total: -11.98 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -64.91 3.81 -61.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746400912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.964 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds