Wall clock time and date at job start Tue Mar 31 2020 02:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46943 * 2 1 4 4 H 1.09000 * 110.88586 * 51.19058 * 3 2 1 5 5 C 1.54861 * 111.03855 * 287.29459 * 3 2 1 6 6 C 1.51282 * 104.20513 * 217.09850 * 5 3 2 7 7 O 1.21288 * 124.93887 * 196.24394 * 6 5 3 8 8 N 1.34415 * 110.11730 * 16.26751 * 6 5 3 9 9 C 1.46506 * 124.35027 * 180.42850 * 8 6 5 10 10 N 1.46900 * 109.46856 * 269.97786 * 9 8 6 11 11 C 1.46841 * 111.00481 * 30.78703 * 10 9 8 12 12 C 1.53036 * 109.52726 * 185.84297 * 11 10 9 13 13 C 1.53117 * 109.27614 * 300.82121 * 12 11 10 14 14 C 1.50699 * 109.57751 * 177.59266 * 13 12 11 15 15 H 1.08004 * 119.99951 * 240.28521 * 14 13 12 16 16 C 1.37879 * 120.00375 * 60.27949 * 14 13 12 17 17 N 1.31516 * 119.99665 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00182 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46972 * 90.00324 * 18 16 14 20 20 H 1.48496 * 109.46779 * 210.00035 * 18 16 14 21 21 H 1.48498 * 109.47184 * 330.00043 * 18 16 14 22 22 C 1.53116 * 109.16386 * 57.65205 * 13 12 11 23 23 C 1.46850 * 111.00282 * 155.00087 * 10 9 8 24 24 C 1.46760 * 111.30303 * 0.40627 * 8 6 5 25 25 H 1.08997 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46917 * 299.99848 * 1 2 3 27 27 H 1.09000 * 109.47076 * 59.99977 * 1 2 3 28 28 H 1.08995 * 109.46852 * 240.00469 * 2 1 3 29 29 H 1.08998 * 109.47569 * 119.99870 * 2 1 3 30 30 H 1.08998 * 110.46775 * 98.42753 * 5 3 2 31 31 H 1.08993 * 110.60550 * 335.83906 * 5 3 2 32 32 H 1.09003 * 109.47223 * 29.97171 * 9 8 6 33 33 H 1.08995 * 109.47125 * 149.97612 * 9 8 6 34 34 H 1.08999 * 109.46227 * 305.85757 * 11 10 9 35 35 H 1.09002 * 109.46506 * 65.82538 * 11 10 9 36 36 H 1.08998 * 109.50457 * 180.88004 * 12 11 10 37 37 H 1.08997 * 109.50651 * 60.75762 * 12 11 10 38 38 H 1.08999 * 109.52319 * 297.74792 * 13 12 11 39 39 H 0.96998 * 120.00265 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.50829 * 182.40559 * 22 13 12 41 41 H 1.09002 * 109.53457 * 62.30638 * 22 13 12 42 42 H 1.08997 * 109.45851 * 294.17474 * 23 10 9 43 43 H 1.09004 * 109.45859 * 54.13679 * 23 10 9 44 44 H 1.09002 * 110.24740 * 101.98470 * 24 8 6 45 45 H 1.09002 * 110.24616 * 223.89995 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5677 2.0217 0.7936 5 6 1.8202 2.1099 -1.3800 6 6 3.0454 2.9761 -1.5729 7 8 3.1418 3.8721 -2.3847 8 7 4.0116 2.6080 -0.7141 9 6 5.3275 3.2463 -0.6271 10 7 6.2616 2.5683 -1.5357 11 6 5.5591 2.0305 -2.7076 12 6 6.5330 1.2091 -3.5555 13 6 7.6946 2.1026 -3.9991 14 6 8.6880 1.2862 -4.7851 15 1 9.7063 1.1936 -4.4373 16 6 8.2969 0.6574 -5.9481 17 7 7.0570 0.7704 -6.3718 18 14 9.5281 -0.3552 -6.9220 19 1 9.4995 -1.7614 -6.4455 20 1 9.1731 -0.3136 -8.3633 21 1 10.8903 0.2046 -6.7313 22 6 8.3793 2.6884 -2.7612 23 6 7.3518 3.4668 -1.9363 24 6 3.5791 1.4848 0.1257 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.9183 2.7220 -1.3681 31 1 1.7584 1.3564 -2.1650 32 1 5.2419 4.2954 -0.9106 33 1 5.6988 3.1754 0.3952 34 1 4.7381 1.3936 -2.3783 35 1 5.1637 2.8533 -3.3034 36 1 6.0150 0.8231 -4.4334 37 1 6.9182 0.3780 -2.9648 38 1 7.3142 2.9120 -4.6222 39 1 6.7817 0.3277 -7.1898 40 1 9.1804 3.3592 -3.0715 41 1 8.7940 1.8810 -2.1577 42 1 6.9481 4.2829 -2.5356 43 1 7.8329 3.8733 -1.0466 44 1 4.0129 0.5532 -0.2377 45 1 3.8683 1.6558 1.1626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781572943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:43 Heat of formation + Delta-G solvation = -37.526241 kcal Electronic energy + Delta-G solvation = -23160.155489 eV Core-core repulsion = 19984.005592 eV Total energy + Delta-G solvation = -3176.149896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66292 -37.90092 -36.80624 -34.75703 -33.25016 -31.36758 -29.78515 -29.64740 -27.70418 -26.35135 -24.23546 -23.37608 -22.02998 -21.30177 -20.68719 -19.29847 -18.52583 -16.94649 -16.28264 -16.24280 -15.73500 -14.87312 -14.58747 -14.34838 -14.31645 -13.70963 -13.63414 -13.31230 -13.12434 -13.07122 -12.80410 -12.43094 -12.23747 -12.10917 -11.84471 -11.70507 -11.36604 -11.20722 -11.01563 -10.91448 -10.86942 -10.70387 -10.41312 -10.14350 -9.94849 -9.67617 -9.37697 -8.99156 -8.81430 -8.61697 -8.24085 -7.66032 -5.91308 -3.97160 2.68754 3.05449 3.34428 3.40947 3.44301 4.22639 4.29875 4.46701 4.48961 4.53271 4.87288 5.01403 5.10226 5.20769 5.36967 5.38782 5.42781 5.49712 5.54691 5.56600 5.66875 5.73215 5.75601 5.80118 5.93192 5.96588 6.07649 6.13110 6.30612 6.39239 6.50109 6.66533 6.71497 6.91323 7.10201 7.20328 7.21164 7.47512 7.65176 7.71029 7.87141 8.10769 8.21484 8.29943 8.53698 9.06744 9.66881 11.14746 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.004421 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.967707 B = 6331.821758 C = 7001.111157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.100 4.100 4 H 0.089 0.911 5 C -0.150 4.150 6 C 0.517 3.483 7 O -0.527 6.527 8 N -0.617 5.617 9 C 0.291 3.709 10 N -0.549 5.549 11 C 0.059 3.941 12 C -0.101 4.101 13 C 0.047 3.953 14 C -0.510 4.510 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.104 4.104 23 C 0.062 3.938 24 C 0.110 3.890 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.030 0.970 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.020 0.980 39 H 0.259 0.741 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.027 0.973 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 -0.018 15.904 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.119 4.119 4 H 0.107 0.893 5 C -0.190 4.190 6 C 0.305 3.695 7 O -0.403 6.403 8 N -0.352 5.352 9 C 0.080 3.920 10 N -0.277 5.277 11 C -0.068 4.068 12 C -0.140 4.140 13 C 0.029 3.971 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.142 4.142 23 C -0.066 4.066 24 C -0.013 4.013 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.463 0.067 15.580 19.343 hybrid contribution 0.317 0.037 -0.959 1.010 sum -11.146 0.104 14.621 18.385 Atomic orbital electron populations 1.21773 0.95453 1.01807 1.01971 1.21527 0.96176 0.94573 1.02913 1.22265 0.94913 0.97552 0.97122 0.89275 1.22496 0.97610 1.00176 0.98763 1.20902 0.85463 0.83488 0.79678 1.90754 1.82373 1.31563 1.35579 1.48335 1.14189 1.34714 1.37973 1.22023 0.78306 0.93411 0.98212 1.62476 1.11224 1.35761 1.18213 1.22242 0.96778 0.98089 0.89719 1.21642 0.96925 0.97562 0.97829 1.18682 0.93101 0.94535 0.90808 1.21207 0.96314 1.30357 1.06978 0.92773 1.24979 0.95136 0.96569 0.97351 1.69895 1.16254 1.44062 1.22807 0.86639 0.81719 0.80628 0.79260 1.20770 1.21345 1.19996 1.21651 0.96211 0.98491 0.97818 1.22106 0.92671 0.93825 0.97975 1.22136 0.93808 0.90123 0.95281 0.92571 0.92743 0.92468 0.91127 0.91252 0.88388 0.87600 0.93120 0.89492 0.93017 0.95151 0.89160 0.94140 0.96163 0.93138 0.93083 0.92496 0.95452 0.92350 0.90557 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.81 37.16 0.36 -0.59 16 2 C -0.11 -0.80 5.30 -26.73 -0.14 -0.94 16 3 C -0.10 -0.81 3.13 -88.86 -0.28 -1.09 16 4 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.15 -1.63 5.90 -26.62 -0.16 -1.79 16 6 C 0.52 8.10 6.26 -10.86 -0.07 8.04 16 7 O -0.53 -10.74 16.58 5.55 0.09 -10.65 16 8 N -0.62 -8.64 1.86 -175.91 -0.33 -8.96 16 9 C 0.29 4.43 6.40 -63.31 -0.41 4.02 16 10 N -0.55 -10.17 4.91 -238.58 -1.17 -11.34 16 11 C 0.06 1.26 4.26 -3.84 -0.02 1.25 16 12 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 13 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 14 C -0.51 -14.41 8.56 -34.44 -0.29 -14.71 16 15 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 17 N -0.89 -26.23 11.37 55.43 0.63 -25.60 16 18 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.10 -2.25 5.32 -26.65 -0.14 -2.39 16 23 C 0.06 1.17 5.29 -3.83 -0.02 1.15 16 24 C 0.11 1.11 6.75 -3.12 -0.02 1.08 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.37 7.75 -51.93 -0.40 -0.03 16 28 H 0.07 0.56 7.94 -51.93 -0.41 0.14 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.11 1.15 7.77 -51.93 -0.40 0.74 16 32 H 0.05 0.83 7.65 -51.93 -0.40 0.43 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 1.04 6.14 -51.93 -0.32 0.72 16 35 H 0.03 0.74 7.12 -51.93 -0.37 0.37 16 36 H 0.09 2.50 6.18 -51.93 -0.32 2.18 16 37 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 44 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -32.33 345.48 -10.27 -42.60 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -8.07 Total: -1.99 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.61 Total: -5.97 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.87 Total: -45.90 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.33 -10.27 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.075 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds