Wall clock time and date at job start Tue Mar 31 2020 02:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46943 * 2 1 4 4 H 1.09000 * 110.88586 * 51.19058 * 3 2 1 5 5 C 1.54861 * 111.03855 * 287.29459 * 3 2 1 6 6 C 1.51282 * 104.20513 * 217.09850 * 5 3 2 7 7 O 1.21288 * 124.93887 * 196.24394 * 6 5 3 8 8 N 1.34415 * 110.11730 * 16.26751 * 6 5 3 9 9 C 1.46506 * 124.35027 * 180.42850 * 8 6 5 10 10 N 1.46900 * 109.46856 * 269.97786 * 9 8 6 11 11 C 1.46841 * 111.00481 * 30.78703 * 10 9 8 12 12 C 1.53036 * 109.52726 * 185.84297 * 11 10 9 13 13 C 1.53117 * 109.27614 * 300.82121 * 12 11 10 14 14 C 1.50699 * 109.57751 * 177.59266 * 13 12 11 15 15 H 1.08004 * 119.99951 * 240.28521 * 14 13 12 16 16 C 1.37879 * 120.00375 * 60.27949 * 14 13 12 17 17 N 1.31516 * 119.99665 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00182 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46972 * 90.00324 * 18 16 14 20 20 H 1.48496 * 109.46779 * 210.00035 * 18 16 14 21 21 H 1.48498 * 109.47184 * 330.00043 * 18 16 14 22 22 C 1.53116 * 109.16386 * 57.65205 * 13 12 11 23 23 C 1.46850 * 111.00282 * 155.00087 * 10 9 8 24 24 C 1.46760 * 111.30303 * 0.40627 * 8 6 5 25 25 H 1.08997 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46917 * 299.99848 * 1 2 3 27 27 H 1.09000 * 109.47076 * 59.99977 * 1 2 3 28 28 H 1.08995 * 109.46852 * 240.00469 * 2 1 3 29 29 H 1.08998 * 109.47569 * 119.99870 * 2 1 3 30 30 H 1.08998 * 110.46775 * 98.42753 * 5 3 2 31 31 H 1.08993 * 110.60550 * 335.83906 * 5 3 2 32 32 H 1.09003 * 109.47223 * 29.97171 * 9 8 6 33 33 H 1.08995 * 109.47125 * 149.97612 * 9 8 6 34 34 H 1.08999 * 109.46227 * 305.85757 * 11 10 9 35 35 H 1.09002 * 109.46506 * 65.82538 * 11 10 9 36 36 H 1.08998 * 109.50457 * 180.88004 * 12 11 10 37 37 H 1.08997 * 109.50651 * 60.75762 * 12 11 10 38 38 H 1.08999 * 109.52319 * 297.74792 * 13 12 11 39 39 H 0.96998 * 120.00265 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.50829 * 182.40559 * 22 13 12 41 41 H 1.09002 * 109.53457 * 62.30638 * 22 13 12 42 42 H 1.08997 * 109.45851 * 294.17474 * 23 10 9 43 43 H 1.09004 * 109.45859 * 54.13679 * 23 10 9 44 44 H 1.09002 * 110.24740 * 101.98470 * 24 8 6 45 45 H 1.09002 * 110.24616 * 223.89995 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5677 2.0217 0.7936 5 6 1.8202 2.1099 -1.3800 6 6 3.0454 2.9761 -1.5729 7 8 3.1418 3.8721 -2.3847 8 7 4.0116 2.6080 -0.7141 9 6 5.3275 3.2463 -0.6271 10 7 6.2616 2.5683 -1.5357 11 6 5.5591 2.0305 -2.7076 12 6 6.5330 1.2091 -3.5555 13 6 7.6946 2.1026 -3.9991 14 6 8.6880 1.2862 -4.7851 15 1 9.7063 1.1936 -4.4373 16 6 8.2969 0.6574 -5.9481 17 7 7.0570 0.7704 -6.3718 18 14 9.5281 -0.3552 -6.9220 19 1 9.4995 -1.7614 -6.4455 20 1 9.1731 -0.3136 -8.3633 21 1 10.8903 0.2046 -6.7313 22 6 8.3793 2.6884 -2.7612 23 6 7.3518 3.4668 -1.9363 24 6 3.5791 1.4848 0.1257 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.9183 2.7220 -1.3681 31 1 1.7584 1.3564 -2.1650 32 1 5.2419 4.2954 -0.9106 33 1 5.6988 3.1754 0.3952 34 1 4.7381 1.3936 -2.3783 35 1 5.1637 2.8533 -3.3034 36 1 6.0150 0.8231 -4.4334 37 1 6.9182 0.3780 -2.9648 38 1 7.3142 2.9120 -4.6222 39 1 6.7817 0.3277 -7.1898 40 1 9.1804 3.3592 -3.0715 41 1 8.7940 1.8810 -2.1577 42 1 6.9481 4.2829 -2.5356 43 1 7.8329 3.8733 -1.0466 44 1 4.0129 0.5532 -0.2377 45 1 3.8683 1.6558 1.1626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781572943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:43 Heat of formation + Delta-G solvation = -57.399593 kcal Electronic energy + Delta-G solvation = -23161.017262 eV Core-core repulsion = 19984.005592 eV Total energy + Delta-G solvation = -3177.011670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79988 -39.52135 -37.91611 -36.19417 -34.75307 -33.02134 -31.55091 -30.81327 -28.59931 -28.04937 -25.85512 -24.18403 -23.77124 -23.03816 -21.38420 -20.48193 -20.39961 -18.52758 -17.96115 -17.38535 -17.08382 -16.49066 -15.92768 -15.66355 -15.49968 -15.09622 -14.80397 -14.67323 -14.44759 -14.33256 -14.04062 -13.91180 -13.76156 -13.37031 -13.03464 -13.00748 -12.84401 -12.64684 -12.43244 -12.31423 -12.05777 -11.93433 -11.81863 -11.71397 -11.50139 -11.42390 -10.87735 -10.84210 -10.71168 -10.41411 -10.04467 -9.20675 -8.09360 -6.24634 1.40077 1.40746 1.47353 1.51540 1.98347 2.42481 3.01128 3.17246 3.37470 3.48765 3.81201 4.07391 4.11604 4.18495 4.22905 4.33905 4.42889 4.47215 4.51482 4.54128 4.60672 4.69046 4.70533 4.71852 4.81660 4.87853 4.91826 4.97639 5.03505 5.16578 5.19648 5.23450 5.28361 5.39254 5.44616 5.50606 5.55774 5.59036 5.92614 5.97741 6.05791 6.16975 6.25488 6.36020 6.87865 7.09841 7.43894 8.95567 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.004421 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.967707 B = 6331.821758 C = 7001.111157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.082 4.082 4 H 0.112 0.888 5 C -0.145 4.145 6 C 0.501 3.499 7 O -0.587 6.587 8 N -0.618 5.618 9 C 0.288 3.712 10 N -0.545 5.545 11 C 0.082 3.918 12 C -0.090 4.090 13 C 0.042 3.958 14 C -0.533 4.533 15 H 0.056 0.944 16 C 0.009 3.991 17 N -0.922 5.922 18 Si 0.959 3.041 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.096 4.096 23 C 0.067 3.933 24 C 0.104 3.896 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.037 0.963 33 H 0.130 0.870 34 H 0.064 0.936 35 H -0.007 1.007 36 H 0.054 0.946 37 H 0.037 0.963 38 H -0.025 1.025 39 H 0.259 0.741 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.008 0.992 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.548 -1.068 18.741 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.101 4.101 4 H 0.130 0.870 5 C -0.185 4.185 6 C 0.291 3.709 7 O -0.467 6.467 8 N -0.351 5.351 9 C 0.078 3.922 10 N -0.272 5.272 11 C -0.046 4.046 12 C -0.129 4.129 13 C 0.024 3.976 14 C -0.571 4.571 15 H 0.074 0.926 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.784 3.216 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.134 4.134 23 C -0.061 4.061 24 C -0.018 4.018 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.055 0.945 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.011 0.989 36 H 0.072 0.928 37 H 0.056 0.944 38 H -0.007 1.007 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.026 0.974 43 H 0.121 0.879 44 H 0.088 0.912 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.334 -1.009 18.469 21.693 hybrid contribution 0.268 0.380 -1.835 1.893 sum -11.066 -0.630 16.634 19.989 Atomic orbital electron populations 1.21775 0.94828 1.02154 1.02238 1.21511 0.96655 0.93572 1.03110 1.22276 0.93722 0.98374 0.95731 0.86973 1.22536 0.95815 0.99555 1.00603 1.21807 0.87214 0.83099 0.78825 1.90716 1.83670 1.34317 1.38007 1.48537 1.13379 1.35240 1.37928 1.22192 0.78516 0.92500 0.99039 1.62506 1.11715 1.36390 1.16631 1.21839 0.96151 0.96534 0.90123 1.21391 0.96938 0.97605 0.96956 1.18665 0.93515 0.93298 0.92140 1.21586 0.96800 1.30861 1.07810 0.92562 1.25838 0.96956 0.97700 0.98444 1.70066 1.18149 1.44829 1.23137 0.85550 0.79423 0.79134 0.77520 1.19792 1.21121 1.19069 1.21512 0.96809 0.98863 0.96205 1.22072 0.92196 0.92742 0.99090 1.22448 0.94988 0.88256 0.96086 0.92263 0.91619 0.93076 0.92412 0.89615 0.86992 0.87883 0.94517 0.85196 0.91743 0.98891 0.92752 0.94438 1.00674 0.93157 0.92548 0.92006 0.97354 0.87910 0.91198 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.81 71.98 0.71 -0.81 16 2 C -0.11 -1.23 5.30 30.60 0.16 -1.07 16 3 C -0.08 -1.10 3.13 -9.65 -0.03 -1.13 16 4 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.15 -3.00 5.90 30.67 0.18 -2.81 16 6 C 0.50 15.75 6.26 87.90 0.55 16.30 16 7 O -0.59 -25.09 16.58 -3.06 -0.05 -25.14 16 8 N -0.62 -16.35 1.86 -829.03 -1.55 -17.90 16 9 C 0.29 8.21 6.40 170.80 1.09 9.30 16 10 N -0.54 -19.67 4.91 -908.73 -4.46 -24.13 16 11 C 0.08 3.60 4.26 86.33 0.37 3.97 16 12 C -0.09 -4.67 5.12 30.65 0.16 -4.51 16 13 C 0.04 2.29 2.16 -11.46 -0.02 2.27 16 14 C -0.53 -30.78 8.56 25.60 0.22 -30.56 16 15 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 16 C 0.01 0.50 5.31 84.65 0.45 0.95 16 17 N -0.92 -56.34 11.37 21.45 0.24 -56.10 16 18 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C -0.10 -4.16 5.32 30.64 0.16 -3.99 16 23 C 0.07 2.46 5.29 86.32 0.46 2.92 16 24 C 0.10 1.77 6.75 86.83 0.59 2.35 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.05 0.57 7.75 -2.39 -0.02 0.55 16 28 H 0.06 0.81 7.94 -2.39 -0.02 0.79 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.10 2.20 7.77 -2.39 -0.02 2.19 16 32 H 0.04 1.18 7.65 -2.39 -0.02 1.16 16 33 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.06 2.63 6.14 -2.39 -0.01 2.62 16 35 H -0.01 -0.38 7.12 -2.39 -0.02 -0.39 16 36 H 0.05 3.18 6.18 -2.39 -0.01 3.17 16 37 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 38 H -0.02 -1.55 8.14 -2.39 -0.02 -1.57 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 43 H 0.10 2.93 8.12 -2.38 -0.02 2.91 16 44 H 0.07 1.33 7.89 -2.39 -0.02 1.31 16 45 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -74.83 345.48 2.19 -72.64 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.94 Total: 10.34 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 5.04 Total: -6.82 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -5.76 Total: -98.12 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -74.83 2.19 -72.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.245 kcal (2) G-P(sol) polarization free energy of solvation -74.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds