Wall clock time and date at job start Tue Mar 31 2020 01:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99634 * 2 1 4 4 N 1.46900 * 109.47294 * 124.11340 * 3 2 1 5 5 C 1.46895 * 111.00070 * 205.08239 * 4 3 2 6 6 C 1.50695 * 109.47232 * 66.04307 * 5 4 3 7 7 H 1.08008 * 120.00075 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99965 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00057 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99859 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47042 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46849 * 120.00156 * 10 8 6 13 13 H 1.48498 * 109.47057 * 240.00126 * 10 8 6 14 14 C 1.46894 * 110.99691 * 81.12746 * 4 3 2 15 15 N 1.46508 * 109.47218 * 271.79655 * 14 4 3 16 16 C 1.46764 * 124.34762 * 287.07683 * 15 14 4 17 17 C 1.54476 * 105.47190 * 197.01513 * 16 15 14 18 18 H 1.09000 * 110.96986 * 216.46653 * 17 16 15 19 19 C 1.53000 * 110.97090 * 92.70084 * 17 16 15 20 20 C 1.53007 * 109.46907 * 64.45357 * 19 17 16 21 21 C 1.53005 * 109.47247 * 184.45289 * 19 17 16 22 22 C 1.54632 * 101.76764 * 334.58495 * 17 16 15 23 23 C 1.34413 * 124.34790 * 106.77664 * 15 14 4 24 24 O 1.21284 * 124.94721 * 359.57349 * 23 15 14 25 25 H 1.07996 * 120.00422 * 5.08547 * 1 2 3 26 26 H 1.08005 * 119.99528 * 185.08639 * 1 2 3 27 27 H 1.07989 * 120.00161 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47017 * 4.11183 * 3 2 1 29 29 H 1.09003 * 109.46708 * 244.11702 * 3 2 1 30 30 H 1.08999 * 109.47241 * 186.04629 * 5 4 3 31 31 H 1.09001 * 109.47185 * 306.04554 * 5 4 3 32 32 H 0.97002 * 119.99760 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47761 * 31.79270 * 14 4 3 34 34 H 1.08997 * 109.47367 * 151.79860 * 14 4 3 35 35 H 1.09001 * 110.24436 * 316.01459 * 16 15 14 36 36 H 1.08998 * 110.24696 * 77.92450 * 16 15 14 37 37 H 1.08998 * 109.47435 * 304.45383 * 19 17 16 38 38 H 1.08997 * 109.47071 * 63.11681 * 20 19 17 39 39 H 1.08999 * 109.46818 * 183.11370 * 20 19 17 40 40 H 1.08992 * 109.47027 * 303.11860 * 20 19 17 41 41 H 1.08997 * 109.46998 * 299.99822 * 21 19 17 42 42 H 1.08994 * 109.46873 * 60.00535 * 21 19 17 43 43 H 1.09001 * 109.47035 * 180.02562 * 21 19 17 44 44 H 1.08995 * 110.48726 * 143.47593 * 22 17 16 45 45 H 1.09001 * 110.48524 * 265.98689 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9810 1.3410 1.1467 5 6 3.2773 2.7247 1.5408 6 6 2.0238 3.3773 2.0641 7 1 1.0995 2.8197 2.1006 8 6 2.0571 4.6859 2.4972 9 7 3.1827 5.3646 2.4532 10 14 0.5035 5.4946 3.1465 11 1 -0.6194 4.5244 3.0923 12 1 0.7190 5.9236 4.5519 13 1 0.1760 6.6786 2.3122 14 6 4.2159 0.6004 0.8560 15 7 4.0367 -0.8084 1.2157 16 6 3.9886 -1.3116 2.5936 17 6 4.2280 -2.8338 2.4850 18 1 3.6297 -3.3760 3.2173 19 6 5.7132 -3.1669 2.6399 20 6 6.1761 -2.7903 4.0488 21 6 5.9258 -4.6656 2.4168 22 6 3.7421 -3.1277 1.0468 23 6 3.8894 -1.8054 0.3264 24 8 3.8788 -1.6658 -0.8784 25 1 -0.5400 0.9315 -0.0829 26 1 -0.5399 -0.9317 0.0829 27 1 1.8500 -0.9352 -0.0004 28 1 1.3573 2.1323 0.0737 29 1 2.6336 1.3955 -0.9246 30 1 4.0396 2.7253 2.3198 31 1 3.6414 3.2789 0.6757 32 1 3.2062 6.2851 2.7583 33 1 4.4443 0.6776 -0.2070 34 1 5.0372 1.0217 1.4356 35 1 4.7730 -0.8481 3.1919 36 1 3.0116 -1.1125 3.0340 37 1 6.2902 -2.6049 1.9055 38 1 5.6382 -3.3924 4.7810 39 1 7.2462 -2.9761 4.1414 40 1 5.9738 -1.7344 4.2276 41 1 5.3489 -5.2277 3.1512 42 1 5.5961 -4.9338 1.4132 43 1 6.9838 -4.9030 2.5276 44 1 4.3665 -3.8904 0.5815 45 1 2.6985 -3.4422 1.0535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793560883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:25 Heat of formation + Delta-G solvation = -13.294360 kcal Electronic energy + Delta-G solvation = -23074.024636 eV Core-core repulsion = 19898.925512 eV Total energy + Delta-G solvation = -3175.099123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.49933 -37.25335 -36.83219 -34.49213 -33.12690 -32.30550 -30.61746 -28.22467 -27.11511 -26.43692 -25.80177 -23.73741 -22.56899 -20.79834 -19.94539 -19.44886 -18.95071 -16.78771 -16.19337 -16.04156 -15.59184 -15.01167 -14.75786 -14.37061 -14.33328 -14.04329 -13.72985 -13.41487 -12.97607 -12.87595 -12.46906 -12.41267 -12.25047 -12.16658 -11.99389 -11.81415 -11.76851 -11.42230 -10.96145 -10.90650 -10.76187 -10.70581 -10.62206 -10.52659 -10.19526 -9.97657 -9.58908 -9.28508 -8.82728 -8.53793 -8.39627 -7.39977 -6.08508 -4.09906 2.80350 2.88580 3.27951 3.35383 3.36485 3.41623 4.34683 4.39493 4.45371 4.53541 4.81602 5.04540 5.05627 5.17608 5.27494 5.29253 5.46289 5.49858 5.54743 5.57986 5.62561 5.64284 5.69978 5.73544 5.83631 5.88941 5.91235 5.98707 6.08656 6.12423 6.20529 6.25262 6.38931 6.56597 6.75775 7.08734 7.17121 7.26425 7.38152 7.46916 7.75632 7.98509 8.11157 8.40134 8.51644 8.98214 9.54804 11.02087 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.004687 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.085242 B = 5973.020671 C = 6699.245125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.122 4.122 3 C 0.087 3.913 4 N -0.544 5.544 5 C 0.198 3.802 6 C -0.507 4.507 7 H 0.065 0.935 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.283 3.717 15 N -0.596 5.596 16 C 0.110 3.890 17 C -0.097 4.097 18 H 0.094 0.906 19 C -0.089 4.089 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.155 4.155 23 C 0.515 3.485 24 O -0.543 6.543 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.033 0.967 31 H -0.005 1.005 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.811 -17.498 1.630 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.141 4.141 3 C -0.041 4.041 4 N -0.270 5.270 5 C 0.074 3.926 6 C -0.546 4.546 7 H 0.083 0.917 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.725 3.275 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.072 3.928 15 N -0.330 5.330 16 C -0.014 4.014 17 C -0.116 4.116 18 H 0.112 0.888 19 C -0.108 4.108 20 C -0.207 4.207 21 C -0.205 4.205 22 C -0.195 4.195 23 C 0.302 3.698 24 O -0.422 6.422 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.012 0.988 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.689 -17.349 1.431 17.794 hybrid contribution -0.466 0.937 -0.132 1.054 sum 3.223 -16.412 1.299 16.776 Atomic orbital electron populations 1.23632 0.95931 1.01014 1.04112 1.23087 0.95727 0.98731 0.96559 1.21221 0.96221 0.95590 0.91055 1.61689 1.11953 1.18156 1.35173 1.19736 0.97631 0.80297 0.94983 1.21170 0.95628 0.96330 1.41433 0.91692 1.24971 0.96331 0.97224 0.95925 1.69960 1.25625 1.10385 1.47743 0.86453 0.83290 0.79263 0.78517 1.19625 1.21001 1.21086 1.21908 0.93061 0.78864 0.98999 1.48497 1.70366 1.07229 1.06957 1.22129 1.02931 0.92368 0.83933 1.22257 0.96795 0.96008 0.96496 0.88758 1.21094 0.94815 0.96698 0.98144 1.21887 1.00940 1.01992 0.95855 1.21882 1.01533 0.95402 1.01731 1.22500 1.03886 0.96989 0.96143 1.20784 0.75343 0.87030 0.86625 1.90713 1.51819 1.86021 1.13613 0.88781 0.89527 0.88404 0.89090 0.95032 0.94933 0.98763 0.92914 0.92046 0.90157 0.90220 0.90518 0.91029 0.92548 0.92720 0.91971 0.92546 0.92463 0.92693 0.88261 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.55 14.31 29.01 0.42 -3.14 16 2 C -0.12 -2.29 9.36 -36.03 -0.34 -2.63 16 3 C 0.09 1.79 5.26 -4.97 -0.03 1.77 16 4 N -0.54 -11.48 4.48 -241.43 -1.08 -12.56 16 5 C 0.20 4.94 4.63 -4.98 -0.02 4.92 16 6 C -0.51 -13.79 8.17 -34.44 -0.28 -14.08 16 7 H 0.06 1.79 7.40 -52.48 -0.39 1.40 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 10 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.28 5.17 5.93 -63.31 -0.38 4.79 16 15 N -0.60 -9.30 2.70 -175.91 -0.47 -9.78 16 16 C 0.11 1.38 6.76 -3.12 -0.02 1.36 16 17 C -0.10 -0.92 2.68 -88.99 -0.24 -1.16 16 18 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.09 -0.78 2.49 -90.61 -0.23 -1.00 16 20 C -0.15 -1.20 9.06 37.16 0.34 -0.87 16 21 C -0.15 -1.10 9.00 37.16 0.33 -0.76 16 22 C -0.16 -1.73 6.26 -26.73 -0.17 -1.90 16 23 C 0.51 8.12 5.82 -10.86 -0.06 8.06 16 24 O -0.54 -10.63 16.77 5.55 0.09 -10.53 16 25 H 0.09 1.59 7.85 -52.49 -0.41 1.18 16 26 H 0.09 1.28 8.06 -52.48 -0.42 0.86 16 27 H 0.10 1.84 4.55 -52.49 -0.24 1.60 16 28 H 0.09 2.03 6.25 -51.93 -0.32 1.71 16 29 H 0.03 0.66 7.49 -51.93 -0.39 0.27 16 30 H 0.03 0.85 7.79 -51.93 -0.40 0.45 16 31 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.06 1.18 6.90 -51.93 -0.36 0.83 16 34 H 0.08 1.41 7.53 -51.93 -0.39 1.01 16 35 H 0.08 0.96 6.07 -51.93 -0.32 0.64 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.54 6.28 -51.93 -0.33 0.22 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.43 6.31 -51.93 -0.33 0.10 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.99 6.05 -51.93 -0.31 0.68 16 45 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -30.54 353.38 -8.75 -39.28 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.55 Total: 0.37 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.77 Total: -3.16 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.82 Total: -47.56 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.54 -8.75 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.989 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds