Wall clock time and date at job start Tue Mar 31 2020 01:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99634 * 2 1 4 4 N 1.46900 * 109.47294 * 124.11340 * 3 2 1 5 5 C 1.46895 * 111.00070 * 205.08239 * 4 3 2 6 6 C 1.50695 * 109.47232 * 66.04307 * 5 4 3 7 7 H 1.08008 * 120.00075 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99965 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00057 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99859 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47042 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46849 * 120.00156 * 10 8 6 13 13 H 1.48498 * 109.47057 * 240.00126 * 10 8 6 14 14 C 1.46894 * 110.99691 * 81.12746 * 4 3 2 15 15 N 1.46508 * 109.47218 * 271.79655 * 14 4 3 16 16 C 1.46764 * 124.34762 * 287.07683 * 15 14 4 17 17 C 1.54476 * 105.47190 * 197.01513 * 16 15 14 18 18 H 1.09000 * 110.96986 * 216.46653 * 17 16 15 19 19 C 1.53000 * 110.97090 * 92.70084 * 17 16 15 20 20 C 1.53007 * 109.46907 * 64.45357 * 19 17 16 21 21 C 1.53005 * 109.47247 * 184.45289 * 19 17 16 22 22 C 1.54632 * 101.76764 * 334.58495 * 17 16 15 23 23 C 1.34413 * 124.34790 * 106.77664 * 15 14 4 24 24 O 1.21284 * 124.94721 * 359.57349 * 23 15 14 25 25 H 1.07996 * 120.00422 * 5.08547 * 1 2 3 26 26 H 1.08005 * 119.99528 * 185.08639 * 1 2 3 27 27 H 1.07989 * 120.00161 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47017 * 4.11183 * 3 2 1 29 29 H 1.09003 * 109.46708 * 244.11702 * 3 2 1 30 30 H 1.08999 * 109.47241 * 186.04629 * 5 4 3 31 31 H 1.09001 * 109.47185 * 306.04554 * 5 4 3 32 32 H 0.97002 * 119.99760 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47761 * 31.79270 * 14 4 3 34 34 H 1.08997 * 109.47367 * 151.79860 * 14 4 3 35 35 H 1.09001 * 110.24436 * 316.01459 * 16 15 14 36 36 H 1.08998 * 110.24696 * 77.92450 * 16 15 14 37 37 H 1.08998 * 109.47435 * 304.45383 * 19 17 16 38 38 H 1.08997 * 109.47071 * 63.11681 * 20 19 17 39 39 H 1.08999 * 109.46818 * 183.11370 * 20 19 17 40 40 H 1.08992 * 109.47027 * 303.11860 * 20 19 17 41 41 H 1.08997 * 109.46998 * 299.99822 * 21 19 17 42 42 H 1.08994 * 109.46873 * 60.00535 * 21 19 17 43 43 H 1.09001 * 109.47035 * 180.02562 * 21 19 17 44 44 H 1.08995 * 110.48726 * 143.47593 * 22 17 16 45 45 H 1.09001 * 110.48524 * 265.98689 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9810 1.3410 1.1467 5 6 3.2773 2.7247 1.5408 6 6 2.0238 3.3773 2.0641 7 1 1.0995 2.8197 2.1006 8 6 2.0571 4.6859 2.4972 9 7 3.1827 5.3646 2.4532 10 14 0.5035 5.4946 3.1465 11 1 -0.6194 4.5244 3.0923 12 1 0.7190 5.9236 4.5519 13 1 0.1760 6.6786 2.3122 14 6 4.2159 0.6004 0.8560 15 7 4.0367 -0.8084 1.2157 16 6 3.9886 -1.3116 2.5936 17 6 4.2280 -2.8338 2.4850 18 1 3.6297 -3.3760 3.2173 19 6 5.7132 -3.1669 2.6399 20 6 6.1761 -2.7903 4.0488 21 6 5.9258 -4.6656 2.4168 22 6 3.7421 -3.1277 1.0468 23 6 3.8894 -1.8054 0.3264 24 8 3.8788 -1.6658 -0.8784 25 1 -0.5400 0.9315 -0.0829 26 1 -0.5399 -0.9317 0.0829 27 1 1.8500 -0.9352 -0.0004 28 1 1.3573 2.1323 0.0737 29 1 2.6336 1.3955 -0.9246 30 1 4.0396 2.7253 2.3198 31 1 3.6414 3.2789 0.6757 32 1 3.2062 6.2851 2.7583 33 1 4.4443 0.6776 -0.2070 34 1 5.0372 1.0217 1.4356 35 1 4.7730 -0.8481 3.1919 36 1 3.0116 -1.1125 3.0340 37 1 6.2902 -2.6049 1.9055 38 1 5.6382 -3.3924 4.7810 39 1 7.2462 -2.9761 4.1414 40 1 5.9738 -1.7344 4.2276 41 1 5.3489 -5.2277 3.1512 42 1 5.5961 -4.9338 1.4132 43 1 6.9838 -4.9030 2.5276 44 1 4.3665 -3.8904 0.5815 45 1 2.6985 -3.4422 1.0535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793560883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:24 Heat of formation + Delta-G solvation = -31.286634 kcal Electronic energy + Delta-G solvation = -23074.804839 eV Core-core repulsion = 19898.925512 eV Total energy + Delta-G solvation = -3175.879327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66510 -38.66843 -38.15671 -35.63613 -34.98028 -33.95601 -31.79457 -29.26826 -28.83382 -27.44545 -27.11982 -25.47489 -23.54045 -22.56716 -20.90583 -20.72367 -20.30122 -18.59897 -17.58779 -17.42812 -16.82403 -16.66332 -16.18443 -15.82224 -15.37986 -15.24052 -15.06551 -14.61000 -14.45050 -14.28333 -14.07352 -13.53011 -13.37776 -13.30738 -13.14814 -12.93660 -12.82870 -12.71135 -12.60340 -12.51981 -12.38206 -11.96694 -11.76060 -11.62048 -11.44737 -11.38486 -11.31335 -10.76850 -10.64282 -10.31420 -9.76131 -9.17421 -8.21464 -6.30853 1.37499 1.40753 1.42142 1.54867 1.60815 2.08594 2.40739 3.11516 3.34460 3.48016 3.51077 3.76243 3.94509 4.04430 4.13235 4.27174 4.32945 4.35954 4.46041 4.52224 4.55615 4.69281 4.79145 4.81227 4.82641 4.85010 4.93189 4.96224 5.06511 5.12191 5.13529 5.15988 5.29554 5.37019 5.49806 5.55861 5.57791 5.65293 5.70479 5.91008 5.95839 6.16027 6.33319 6.52375 6.83607 7.20272 7.38658 8.89415 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.004687 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.085242 B = 5973.020671 C = 6699.245125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 C 0.092 3.908 4 N -0.540 5.540 5 C 0.214 3.786 6 C -0.519 4.519 7 H 0.061 0.939 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.966 3.034 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.281 1.281 14 C 0.288 3.712 15 N -0.598 5.598 16 C 0.105 3.895 17 C -0.080 4.080 18 H 0.124 0.876 19 C -0.087 4.087 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.144 4.144 23 C 0.505 3.495 24 O -0.587 6.587 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.020 0.980 30 H 0.016 0.984 31 H -0.034 1.034 32 H 0.265 0.735 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.115 0.885 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.451 -19.696 3.038 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.162 4.162 3 C -0.035 4.035 4 N -0.266 5.266 5 C 0.088 3.912 6 C -0.557 4.557 7 H 0.079 0.921 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.791 3.209 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.207 1.207 14 C 0.075 3.925 15 N -0.331 5.331 16 C -0.017 4.017 17 C -0.099 4.099 18 H 0.142 0.858 19 C -0.106 4.106 20 C -0.205 4.205 21 C -0.202 4.202 22 C -0.184 4.184 23 C 0.295 3.705 24 O -0.469 6.469 25 H 0.111 0.889 26 H 0.136 0.864 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.038 0.962 30 H 0.035 0.965 31 H -0.017 1.017 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.133 0.867 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.333 -19.587 2.859 19.931 hybrid contribution -0.017 1.615 -0.602 1.724 sum 2.316 -17.972 2.257 18.260 Atomic orbital electron populations 1.23881 0.95219 1.02430 1.00847 1.22901 0.96333 0.97409 0.99570 1.21119 0.95704 0.96409 0.90297 1.61699 1.13206 1.15997 1.35717 1.19390 0.96463 0.82173 0.93198 1.21389 0.95983 0.96822 1.41518 0.92106 1.25817 0.99497 0.97778 0.96034 1.70072 1.27741 1.10827 1.48562 0.85385 0.79393 0.78181 0.77975 1.18904 1.20266 1.20651 1.21717 0.92027 0.80486 0.98228 1.48508 1.70044 1.05906 1.08631 1.22328 1.02666 0.94746 0.82002 1.22275 0.97826 0.93546 0.96207 0.85785 1.21072 0.93844 0.97651 0.98010 1.21872 1.01437 1.01503 0.95698 1.21857 1.02121 0.94072 1.02182 1.22532 1.05419 0.94169 0.96249 1.21656 0.74060 0.88621 0.86170 1.90683 1.53629 1.86901 1.15637 0.88856 0.86431 0.88189 0.91146 0.96217 0.96550 1.01674 0.92641 0.93596 0.89888 0.89919 0.91299 0.93131 0.91116 0.92369 0.93112 0.91078 0.92458 0.92368 0.86669 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.98 14.31 67.78 0.97 -5.01 16 2 C -0.14 -5.32 9.36 25.64 0.24 -5.08 16 3 C 0.09 3.96 5.26 85.56 0.45 4.41 16 4 N -0.54 -23.66 4.48 -917.76 -4.12 -27.77 16 5 C 0.21 11.15 4.63 85.56 0.40 11.55 16 6 C -0.52 -28.82 8.17 25.60 0.21 -28.61 16 7 H 0.06 3.37 7.40 -2.91 -0.02 3.35 16 8 C 0.01 0.40 5.46 84.66 0.46 0.86 16 9 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 10 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 C 0.29 10.99 5.93 170.81 1.01 12.00 16 15 N -0.60 -18.74 2.70 -829.03 -2.24 -20.97 16 16 C 0.10 2.52 6.76 86.83 0.59 3.11 16 17 C -0.08 -1.31 2.68 -9.74 -0.03 -1.33 16 18 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 19 C -0.09 -1.33 2.49 -10.79 -0.03 -1.35 16 20 C -0.15 -2.06 9.06 71.98 0.65 -1.41 16 21 C -0.15 -1.70 9.00 71.98 0.65 -1.05 16 22 C -0.14 -2.85 6.26 30.59 0.19 -2.66 16 23 C 0.51 15.73 5.82 87.90 0.51 16.24 16 24 O -0.59 -23.29 16.77 -3.04 -0.05 -23.34 16 25 H 0.09 3.02 7.85 -2.91 -0.02 3.00 16 26 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.10 3.69 4.55 -2.92 -0.01 3.68 16 28 H 0.07 3.26 6.25 -2.38 -0.01 3.25 16 29 H 0.02 0.87 7.49 -2.39 -0.02 0.86 16 30 H 0.02 0.90 7.79 -2.39 -0.02 0.88 16 31 H -0.03 -1.97 8.12 -2.39 -0.02 -1.98 16 32 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.05 1.89 6.90 -2.39 -0.02 1.88 16 34 H 0.08 3.07 7.53 -2.39 -0.02 3.05 16 35 H 0.08 1.94 6.07 -2.39 -0.01 1.93 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.05 0.82 6.28 -2.39 -0.02 0.81 16 41 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.68 6.31 -2.39 -0.02 0.66 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.12 1.97 6.05 -2.39 -0.01 1.96 16 45 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -67.40 353.38 3.13 -64.27 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.95 Total: 15.02 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 6.28 Total: 1.66 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -6.07 Total: -103.33 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.05 Total: -23.34 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -67.40 3.13 -64.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.980 kcal (2) G-P(sol) polarization free energy of solvation -67.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds