Wall clock time and date at job start Tue Mar 31 2020 01:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50691 * 119.99896 * 2 1 4 4 N 1.46899 * 109.47377 * 234.84850 * 3 2 1 5 5 C 1.46903 * 110.99943 * 164.40166 * 4 3 2 6 6 C 1.50691 * 109.47336 * 293.95402 * 5 4 3 7 7 H 1.08002 * 120.00557 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99877 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99928 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47057 * 60.00466 * 10 8 6 12 12 H 1.48502 * 109.47174 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47523 * 300.00455 * 10 8 6 14 14 C 1.46898 * 111.00102 * 288.35873 * 4 3 2 15 15 N 1.46497 * 109.47292 * 155.00937 * 14 4 3 16 16 C 1.46755 * 124.35309 * 279.34695 * 15 14 4 17 17 C 1.54660 * 105.38687 * 162.85139 * 16 15 14 18 18 H 1.09002 * 111.19388 * 267.59820 * 17 16 15 19 19 C 1.52994 * 110.82085 * 143.77592 * 17 16 15 20 20 C 1.53009 * 109.46892 * 181.35287 * 19 17 16 21 21 C 1.53007 * 109.47109 * 180.02562 * 20 19 17 22 22 C 1.54630 * 101.67943 * 25.76562 * 17 16 15 23 23 C 1.34419 * 124.34603 * 99.64138 * 15 14 4 24 24 O 1.21282 * 124.94326 * 0.39376 * 23 15 14 25 25 H 1.07999 * 119.99811 * 0.27542 * 1 2 3 26 26 H 1.08006 * 119.99711 * 180.26860 * 1 2 3 27 27 H 1.07999 * 119.99811 * 179.72458 * 2 1 3 28 28 H 1.09005 * 109.47564 * 354.85008 * 3 2 1 29 29 H 1.09001 * 109.47231 * 114.84620 * 3 2 1 30 30 H 1.09000 * 109.46912 * 53.96096 * 5 4 3 31 31 H 1.09003 * 109.46587 * 173.95138 * 5 4 3 32 32 H 0.96998 * 119.99570 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47256 * 275.01242 * 14 4 3 34 34 H 1.09001 * 109.47016 * 35.01025 * 14 4 3 35 35 H 1.09000 * 110.24459 * 281.98211 * 16 15 14 36 36 H 1.09007 * 110.24561 * 43.97732 * 16 15 14 37 37 H 1.09002 * 109.47583 * 301.34969 * 19 17 16 38 38 H 1.08991 * 109.47405 * 61.35391 * 19 17 16 39 39 H 1.08995 * 109.47063 * 299.99966 * 20 19 17 40 40 H 1.09000 * 109.47242 * 59.99695 * 20 19 17 41 41 H 1.09001 * 109.46881 * 59.99818 * 21 20 19 42 42 H 1.08994 * 109.46562 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.46693 * 299.99927 * 21 20 19 44 44 H 1.08999 * 110.48353 * 216.30934 * 22 17 16 45 45 H 1.09006 * 110.60003 * 93.72479 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9989 1.3305 -1.1324 5 6 3.4761 2.6957 -1.3904 6 6 2.3258 3.5502 -1.8565 7 1 1.3387 3.1223 -1.9511 8 6 2.5331 4.8789 -2.1611 9 7 3.7350 5.4003 -2.0454 10 14 1.1073 5.9381 -2.7394 11 1 0.0571 5.9704 -1.6900 12 1 1.5897 7.3182 -3.0002 13 1 0.5416 5.3677 -3.9884 14 6 4.1240 0.4134 -0.9066 15 7 4.6847 0.0015 -2.1958 16 6 4.1170 -1.0498 -3.0479 17 6 4.7467 -0.8316 -4.4435 18 1 4.1182 -0.1927 -5.0639 19 6 5.0144 -2.1700 -5.1346 20 6 5.6670 -1.9197 -6.4957 21 6 5.9342 -3.2582 -7.1872 22 6 6.0715 -0.1210 -4.0815 23 6 5.7886 0.5342 -2.7476 24 8 6.4600 1.4126 -2.2489 25 1 -0.5400 0.9353 -0.0045 26 1 -0.5400 -0.9354 0.0044 27 1 1.8501 -0.9353 0.0045 28 1 1.3588 2.1315 -0.0922 29 1 2.6192 1.4038 0.9325 30 1 3.8921 3.1144 -0.4741 31 1 4.2465 2.6716 -2.1612 32 1 3.8809 6.3349 -2.2600 33 1 4.8923 0.9181 -0.3208 34 1 3.7734 -0.4655 -0.3655 35 1 4.3826 -2.0335 -2.6608 36 1 3.0333 -0.9458 -3.1039 37 1 5.6817 -2.7710 -4.5168 38 1 4.0730 -2.7010 -5.2753 39 1 4.9998 -1.3188 -7.1135 40 1 6.6085 -1.3886 -6.3551 41 1 4.9925 -3.7887 -7.3279 42 1 6.3995 -3.0797 -8.1565 43 1 6.6013 -3.8594 -6.5695 44 1 6.3182 0.6309 -4.8311 45 1 6.8814 -0.8444 -3.9871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793564485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:36 Heat of formation + Delta-G solvation = -19.567846 kcal Electronic energy + Delta-G solvation = -22688.097517 eV Core-core repulsion = 19512.726355 eV Total energy + Delta-G solvation = -3175.371162 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10449 -37.03185 -36.62226 -34.62287 -33.17862 -32.39020 -31.05406 -28.07318 -27.24327 -26.41503 -25.02517 -23.59573 -21.85878 -20.77545 -20.38488 -19.42388 -18.77368 -16.66044 -16.38187 -16.07398 -15.25118 -14.99577 -14.78264 -14.61057 -14.09832 -13.78064 -13.64570 -13.41008 -13.32821 -12.84673 -12.67381 -12.33699 -12.16917 -12.07723 -11.78398 -11.53805 -11.53185 -11.33915 -11.10665 -10.78347 -10.77163 -10.72917 -10.64994 -10.50986 -10.25445 -9.88037 -9.27301 -9.22602 -8.99176 -8.43330 -8.28998 -7.31369 -5.95216 -3.98443 2.64606 3.08186 3.35042 3.39604 3.41865 3.52338 4.44489 4.47487 4.61634 4.69858 4.97201 5.03856 5.06211 5.22233 5.25196 5.36549 5.39924 5.48629 5.51039 5.62887 5.63348 5.68725 5.71155 5.76304 5.84121 5.89833 5.93886 6.01276 6.08489 6.13717 6.19560 6.19867 6.33358 6.50682 6.88298 6.96270 7.20312 7.36972 7.39503 7.63141 7.82960 8.12507 8.20846 8.54481 8.72483 9.08706 9.64893 11.14736 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.005030 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.714222 B = 5564.887131 C = 6368.488472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 C 0.088 3.912 4 N -0.547 5.547 5 C 0.197 3.803 6 C -0.512 4.512 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.892 5.892 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.287 3.713 15 N -0.603 5.603 16 C 0.114 3.886 17 C -0.101 4.101 18 H 0.093 0.907 19 C -0.106 4.106 20 C -0.127 4.127 21 C -0.152 4.152 22 C -0.148 4.148 23 C 0.516 3.484 24 O -0.527 6.527 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.031 0.969 30 H -0.010 1.010 31 H 0.038 0.962 32 H 0.261 0.739 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 -18.110 -4.206 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.153 4.153 3 C -0.040 4.040 4 N -0.273 5.273 5 C 0.072 3.928 6 C -0.550 4.550 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.075 3.925 15 N -0.337 5.337 16 C -0.010 4.010 17 C -0.120 4.120 18 H 0.111 0.889 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.210 4.210 22 C -0.188 4.188 23 C 0.303 3.697 24 O -0.402 6.402 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.008 0.992 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.115 0.885 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.895 -17.582 -4.292 18.120 hybrid contribution -0.400 0.942 0.274 1.060 sum 0.495 -16.640 -4.017 17.125 Atomic orbital electron populations 1.23714 0.95932 1.01275 1.02634 1.22996 0.95952 0.98304 0.98081 1.21118 0.95766 0.95636 0.91503 1.61955 1.14938 1.11894 1.38516 1.19752 0.96087 0.81058 0.95869 1.21096 0.95202 0.93962 1.44771 0.92057 1.24998 0.95659 0.97979 0.95866 1.69988 1.20705 1.13706 1.48675 0.86610 0.82443 0.79357 0.79254 1.20307 1.21360 1.20268 1.21705 0.92379 0.95807 0.82603 1.48241 1.26769 1.37116 1.21608 1.22035 0.99618 0.90179 0.89146 1.22234 0.96295 0.97371 0.96080 0.88905 1.21585 1.00995 0.95760 0.96032 1.21552 1.01193 0.97599 0.96124 1.21775 1.01419 0.97505 1.00251 1.22404 0.98690 1.01207 0.96539 1.20837 0.80577 0.81559 0.86743 1.90756 1.52294 1.29749 1.67410 0.88538 0.89240 0.88474 0.88684 0.95119 0.99220 0.94382 0.92898 0.92569 0.90829 0.91922 0.90033 0.91708 0.91424 0.91780 0.91715 0.92834 0.92924 0.92882 0.88454 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.77 14.32 29.01 0.42 -2.35 16 2 C -0.13 -2.05 9.24 -36.03 -0.33 -2.39 16 3 C 0.09 1.67 5.23 -4.98 -0.03 1.64 16 4 N -0.55 -11.75 4.54 -241.44 -1.10 -12.85 16 5 C 0.20 5.36 4.57 -4.98 -0.02 5.34 16 6 C -0.51 -14.68 8.29 -34.44 -0.29 -14.96 16 7 H 0.06 1.72 7.25 -52.49 -0.38 1.34 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.70 13.29 55.43 0.74 -26.96 16 10 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.29 5.33 5.62 -63.32 -0.36 4.97 16 15 N -0.60 -10.46 3.09 -175.80 -0.54 -11.00 16 16 C 0.11 1.47 6.91 -3.03 -0.02 1.45 16 17 C -0.10 -1.16 3.20 -88.89 -0.28 -1.45 16 18 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 19 C -0.11 -0.90 4.56 -26.73 -0.12 -1.02 16 20 C -0.13 -1.04 5.78 -26.72 -0.15 -1.20 16 21 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 22 C -0.15 -2.01 5.58 -26.74 -0.15 -2.16 16 23 C 0.52 9.86 7.32 -10.86 -0.08 9.78 16 24 O -0.53 -12.72 16.91 5.56 0.09 -12.63 16 25 H 0.10 1.40 7.84 -52.49 -0.41 0.99 16 26 H 0.09 1.05 8.06 -52.48 -0.42 0.62 16 27 H 0.10 1.31 7.08 -52.49 -0.37 0.93 16 28 H 0.09 2.01 6.24 -51.93 -0.32 1.69 16 29 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 30 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 31 H 0.04 1.16 6.71 -51.93 -0.35 0.81 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.06 1.17 7.50 -51.93 -0.39 0.78 16 34 H 0.07 1.12 6.49 -51.93 -0.34 0.79 16 35 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.10 1.09 7.86 -51.93 -0.41 0.69 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -33.89 362.83 -9.48 -43.37 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.97 Total: -0.97 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.15 Total: -1.49 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.90 Total: -50.82 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.89 -9.48 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793564485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.799 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds