Wall clock time and date at job start Tue Mar 31 2020 01:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50691 * 119.99896 * 2 1 4 4 N 1.46899 * 109.47377 * 234.84850 * 3 2 1 5 5 C 1.46903 * 110.99943 * 164.40166 * 4 3 2 6 6 C 1.50691 * 109.47336 * 293.95402 * 5 4 3 7 7 H 1.08002 * 120.00557 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99877 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99928 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47057 * 60.00466 * 10 8 6 12 12 H 1.48502 * 109.47174 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47523 * 300.00455 * 10 8 6 14 14 C 1.46898 * 111.00102 * 288.35873 * 4 3 2 15 15 N 1.46497 * 109.47292 * 155.00937 * 14 4 3 16 16 C 1.46755 * 124.35309 * 279.34695 * 15 14 4 17 17 C 1.54660 * 105.38687 * 162.85139 * 16 15 14 18 18 H 1.09002 * 111.19388 * 267.59820 * 17 16 15 19 19 C 1.52994 * 110.82085 * 143.77592 * 17 16 15 20 20 C 1.53009 * 109.46892 * 181.35287 * 19 17 16 21 21 C 1.53007 * 109.47109 * 180.02562 * 20 19 17 22 22 C 1.54630 * 101.67943 * 25.76562 * 17 16 15 23 23 C 1.34419 * 124.34603 * 99.64138 * 15 14 4 24 24 O 1.21282 * 124.94326 * 0.39376 * 23 15 14 25 25 H 1.07999 * 119.99811 * 0.27542 * 1 2 3 26 26 H 1.08006 * 119.99711 * 180.26860 * 1 2 3 27 27 H 1.07999 * 119.99811 * 179.72458 * 2 1 3 28 28 H 1.09005 * 109.47564 * 354.85008 * 3 2 1 29 29 H 1.09001 * 109.47231 * 114.84620 * 3 2 1 30 30 H 1.09000 * 109.46912 * 53.96096 * 5 4 3 31 31 H 1.09003 * 109.46587 * 173.95138 * 5 4 3 32 32 H 0.96998 * 119.99570 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.47256 * 275.01242 * 14 4 3 34 34 H 1.09001 * 109.47016 * 35.01025 * 14 4 3 35 35 H 1.09000 * 110.24459 * 281.98211 * 16 15 14 36 36 H 1.09007 * 110.24561 * 43.97732 * 16 15 14 37 37 H 1.09002 * 109.47583 * 301.34969 * 19 17 16 38 38 H 1.08991 * 109.47405 * 61.35391 * 19 17 16 39 39 H 1.08995 * 109.47063 * 299.99966 * 20 19 17 40 40 H 1.09000 * 109.47242 * 59.99695 * 20 19 17 41 41 H 1.09001 * 109.46881 * 59.99818 * 21 20 19 42 42 H 1.08994 * 109.46562 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.46693 * 299.99927 * 21 20 19 44 44 H 1.08999 * 110.48353 * 216.30934 * 22 17 16 45 45 H 1.09006 * 110.60003 * 93.72479 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9989 1.3305 -1.1324 5 6 3.4761 2.6957 -1.3904 6 6 2.3258 3.5502 -1.8565 7 1 1.3387 3.1223 -1.9511 8 6 2.5331 4.8789 -2.1611 9 7 3.7350 5.4003 -2.0454 10 14 1.1073 5.9381 -2.7394 11 1 0.0571 5.9704 -1.6900 12 1 1.5897 7.3182 -3.0002 13 1 0.5416 5.3677 -3.9884 14 6 4.1240 0.4134 -0.9066 15 7 4.6847 0.0015 -2.1958 16 6 4.1170 -1.0498 -3.0479 17 6 4.7467 -0.8316 -4.4435 18 1 4.1182 -0.1927 -5.0639 19 6 5.0144 -2.1700 -5.1346 20 6 5.6670 -1.9197 -6.4957 21 6 5.9342 -3.2582 -7.1872 22 6 6.0715 -0.1210 -4.0815 23 6 5.7886 0.5342 -2.7476 24 8 6.4600 1.4126 -2.2489 25 1 -0.5400 0.9353 -0.0045 26 1 -0.5400 -0.9354 0.0044 27 1 1.8501 -0.9353 0.0045 28 1 1.3588 2.1315 -0.0922 29 1 2.6192 1.4038 0.9325 30 1 3.8921 3.1144 -0.4741 31 1 4.2465 2.6716 -2.1612 32 1 3.8809 6.3349 -2.2600 33 1 4.8923 0.9181 -0.3208 34 1 3.7734 -0.4655 -0.3655 35 1 4.3826 -2.0335 -2.6608 36 1 3.0333 -0.9458 -3.1039 37 1 5.6817 -2.7710 -4.5168 38 1 4.0730 -2.7010 -5.2753 39 1 4.9998 -1.3188 -7.1135 40 1 6.6085 -1.3886 -6.3551 41 1 4.9925 -3.7887 -7.3279 42 1 6.3995 -3.0797 -8.1565 43 1 6.6013 -3.8594 -6.5695 44 1 6.3182 0.6309 -4.8311 45 1 6.8814 -0.8444 -3.9871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793564485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:34 Heat of formation + Delta-G solvation = -41.859949 kcal Electronic energy + Delta-G solvation = -22689.064176 eV Core-core repulsion = 19512.726355 eV Total energy + Delta-G solvation = -3176.337820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.46137 -38.64593 -37.93589 -35.71256 -35.01995 -33.94527 -32.31102 -29.49360 -28.93045 -27.61920 -26.26938 -25.44740 -22.68515 -22.55226 -21.30907 -20.72671 -20.17471 -18.60269 -17.93294 -17.41613 -16.79835 -16.58747 -16.09091 -15.89815 -15.46626 -15.40536 -14.79152 -14.63186 -14.39180 -14.15682 -14.06600 -13.80871 -13.58521 -13.42210 -13.19618 -12.95332 -12.85658 -12.63997 -12.57203 -12.32541 -12.15561 -12.04125 -11.71757 -11.66802 -11.44536 -11.32779 -11.27629 -10.77067 -10.65618 -10.27208 -9.78111 -9.13362 -8.22035 -6.35540 1.35911 1.40676 1.43248 1.48948 1.62510 2.18529 2.36682 3.08940 3.35008 3.46518 3.54060 3.83288 4.06223 4.08597 4.18178 4.29114 4.33131 4.37387 4.43050 4.48054 4.59013 4.68536 4.75859 4.84308 4.87094 4.89573 5.02058 5.04834 5.07449 5.14098 5.16929 5.22996 5.27763 5.42546 5.51910 5.56636 5.60450 5.61315 5.76456 5.98172 6.01656 6.18809 6.33201 6.50710 6.81636 7.24030 7.34591 8.88725 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.005030 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.714222 B = 5564.887131 C = 6368.488472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.146 4.146 3 C 0.088 3.912 4 N -0.543 5.543 5 C 0.220 3.780 6 C -0.523 4.523 7 H 0.067 0.933 8 C -0.003 4.003 9 N -0.937 5.937 10 Si 0.974 3.026 11 H -0.262 1.262 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.286 3.714 15 N -0.605 5.605 16 C 0.110 3.890 17 C -0.089 4.089 18 H 0.078 0.922 19 C -0.095 4.095 20 C -0.130 4.130 21 C -0.150 4.150 22 C -0.137 4.137 23 C 0.495 3.505 24 O -0.594 6.594 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.067 0.933 29 H 0.029 0.971 30 H -0.054 1.054 31 H -0.004 1.004 32 H 0.263 0.737 33 H 0.022 0.978 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.091 0.909 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 -21.172 -5.206 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.165 4.165 3 C -0.040 4.040 4 N -0.269 5.269 5 C 0.094 3.906 6 C -0.562 4.562 7 H 0.086 0.914 8 C -0.200 4.200 9 N -0.577 5.577 10 Si 0.797 3.203 11 H -0.187 1.187 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.075 3.925 15 N -0.338 5.338 16 C -0.011 4.011 17 C -0.108 4.108 18 H 0.097 0.903 19 C -0.133 4.133 20 C -0.167 4.167 21 C -0.207 4.207 22 C -0.176 4.176 23 C 0.284 3.716 24 O -0.475 6.475 25 H 0.104 0.896 26 H 0.142 0.858 27 H 0.143 0.857 28 H 0.086 0.914 29 H 0.047 0.953 30 H -0.036 1.036 31 H 0.014 0.986 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.434 -20.714 -5.301 21.430 hybrid contribution 0.295 1.861 0.634 1.988 sum -1.139 -18.853 -4.667 19.456 Atomic orbital electron populations 1.23949 0.95478 1.02445 0.99756 1.22812 0.96261 0.96837 1.00567 1.21116 0.94929 0.97542 0.90424 1.61946 1.15923 1.08884 1.40170 1.19237 0.94647 0.84329 0.92429 1.21412 0.95571 0.94615 1.44563 0.91443 1.26049 0.98685 0.99601 0.95701 1.70170 1.23496 1.14157 1.49870 0.85379 0.78633 0.77013 0.79247 1.18694 1.21019 1.19040 1.21762 0.90601 0.96415 0.83772 1.48456 1.26306 1.37550 1.21508 1.22380 0.99406 0.90258 0.89068 1.22222 0.94323 0.98791 0.95506 0.90317 1.21539 1.02210 0.93711 0.95790 1.21564 1.00817 0.98221 0.96123 1.21752 1.01888 0.96821 1.00264 1.22418 1.00994 1.01439 0.92795 1.21919 0.80430 0.80856 0.88389 1.90706 1.54560 1.32828 1.69422 0.89624 0.85751 0.85685 0.91442 0.95302 1.03625 0.98578 0.92827 0.96034 0.86281 0.87991 0.90175 0.90141 0.89834 0.92466 0.92190 0.92262 0.92893 0.92245 0.89022 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.41 14.32 67.77 0.97 -3.44 16 2 C -0.15 -4.09 9.24 25.63 0.24 -3.85 16 3 C 0.09 3.36 5.23 85.55 0.45 3.81 16 4 N -0.54 -24.07 4.54 -917.78 -4.17 -28.24 16 5 C 0.22 12.79 4.57 85.55 0.39 13.18 16 6 C -0.52 -31.13 8.29 25.60 0.21 -30.92 16 7 H 0.07 3.84 7.25 -2.91 -0.02 3.82 16 8 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 9 N -0.94 -60.91 13.29 21.45 0.28 -60.62 16 10 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 C 0.29 10.86 5.62 170.81 0.96 11.82 16 15 N -0.61 -21.08 3.09 -828.71 -2.56 -23.65 16 16 C 0.11 2.57 6.91 86.90 0.60 3.17 16 17 C -0.09 -1.88 3.20 -9.67 -0.03 -1.92 16 18 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 19 C -0.09 -1.26 4.56 30.60 0.14 -1.13 16 20 C -0.13 -1.80 5.78 30.60 0.18 -1.62 16 21 C -0.15 -1.71 9.91 71.98 0.71 -0.99 16 22 C -0.14 -3.65 5.58 30.59 0.17 -3.47 16 23 C 0.49 19.73 7.32 87.90 0.64 20.37 16 24 O -0.59 -31.09 16.91 -3.04 -0.05 -31.14 16 25 H 0.09 2.31 7.84 -2.91 -0.02 2.29 16 26 H 0.12 2.27 8.06 -2.91 -0.02 2.25 16 27 H 0.13 2.82 7.08 -2.91 -0.02 2.80 16 28 H 0.07 2.93 6.24 -2.38 -0.01 2.92 16 29 H 0.03 1.10 8.06 -2.39 -0.02 1.08 16 30 H -0.05 -3.51 8.12 -2.39 -0.02 -3.53 16 31 H 0.00 -0.26 6.71 -2.39 -0.02 -0.27 16 32 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 33 H 0.02 0.97 7.50 -2.39 -0.02 0.95 16 34 H 0.12 3.41 6.49 -2.39 -0.02 3.39 16 35 H 0.10 1.65 7.89 -2.39 -0.02 1.63 16 36 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.89 7.51 -2.39 -0.02 0.87 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.13 2.61 7.86 -2.38 -0.02 2.60 16 Total: -1.00 -80.83 362.83 2.55 -78.28 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.93 Total: 12.05 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 6.09 Total: 5.31 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -6.45 Total: -112.51 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.05 Total: -31.14 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -80.83 2.55 -78.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793564485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.422 kcal (2) G-P(sol) polarization free energy of solvation -80.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds