Wall clock time and date at job start Tue Mar 31 2020 02:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99725 * 2 1 4 4 N 1.46500 * 109.47443 * 124.99534 * 3 2 1 5 5 C 1.46768 * 124.35013 * 89.99544 * 4 3 2 6 6 C 1.54479 * 105.47211 * 162.98733 * 5 4 3 7 7 C 1.54629 * 101.76728 * 25.41615 * 6 5 4 8 8 H 1.08997 * 110.48447 * 216.39033 * 7 6 5 9 9 N 1.46901 * 110.48587 * 93.87962 * 7 6 5 10 10 C 1.46904 * 110.99668 * 62.44975 * 9 7 6 11 11 C 1.50698 * 109.47076 * 60.24362 * 10 9 7 12 12 H 1.08012 * 120.00152 * 3.48084 * 11 10 9 13 13 C 1.37873 * 120.00200 * 183.48560 * 11 10 9 14 14 N 1.31513 * 119.99904 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00242 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47120 * 59.99748 * 15 13 11 17 17 H 1.48497 * 109.47049 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46964 * 299.99577 * 15 13 11 19 19 C 1.46897 * 110.99686 * 186.40427 * 9 7 6 20 20 C 1.53001 * 109.46899 * 164.48077 * 19 9 7 21 21 C 1.53003 * 109.46934 * 296.52181 * 20 19 9 22 22 C 1.53001 * 109.47077 * 176.52001 * 20 19 9 23 23 C 1.34741 * 124.29961 * 269.96298 * 4 3 2 24 24 O 1.21279 * 125.12488 * 0.41256 * 23 4 3 25 25 H 1.08003 * 119.99733 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99957 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00007 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47692 * 4.99188 * 3 2 1 29 29 H 1.09009 * 109.47075 * 244.99250 * 3 2 1 30 30 H 1.08997 * 110.24312 * 43.98137 * 5 4 3 31 31 H 1.09005 * 110.24151 * 281.98387 * 5 4 3 32 32 H 1.09002 * 110.96931 * 267.29324 * 6 5 4 33 33 H 1.09005 * 110.96872 * 143.53832 * 6 5 4 34 34 H 1.09006 * 109.46426 * 180.23759 * 10 9 7 35 35 H 1.08996 * 109.47565 * 300.23973 * 10 9 7 36 36 H 0.97002 * 120.00318 * 179.97438 * 14 13 11 37 37 H 1.08995 * 109.47259 * 44.47901 * 19 9 7 38 38 H 1.08999 * 109.47327 * 284.48135 * 19 9 7 39 39 H 1.08996 * 109.47152 * 56.52217 * 20 19 9 40 40 H 1.08996 * 109.46742 * 299.99781 * 21 20 19 41 41 H 1.08989 * 109.47212 * 60.00188 * 21 20 19 42 42 H 1.08998 * 109.46797 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.46995 * 60.00183 * 22 20 19 44 44 H 1.08998 * 109.46921 * 179.97438 * 22 20 19 45 45 H 1.08998 * 109.47540 * 300.00056 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3321 1.1315 5 6 4.3791 0.8509 1.0762 6 6 5.0778 1.4638 2.3101 7 6 3.8859 1.6843 3.2702 8 1 4.0216 2.6022 3.8422 9 7 3.7333 0.5353 4.1727 10 6 4.9201 0.3726 5.0230 11 6 5.1147 1.6130 5.8565 12 1 4.3947 2.4165 5.8054 13 6 6.2120 1.7223 6.6841 14 7 7.0885 0.7438 6.7467 15 14 6.4536 3.2601 7.7167 16 1 5.2960 3.4291 8.6314 17 1 7.6993 3.1299 8.5144 18 1 6.5573 4.4434 6.8256 19 6 2.5164 0.6626 4.9857 20 6 2.1803 -0.6906 5.6157 21 6 1.8652 -1.7027 4.5124 22 6 0.9638 -0.5388 6.5312 23 6 2.6863 1.8026 2.3561 24 8 1.6081 2.2539 2.6798 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0894 29 1 2.6214 1.4026 -0.9314 30 1 4.8611 1.1937 0.1606 31 1 4.4029 -0.2375 1.1311 32 1 5.5557 2.4104 2.0577 33 1 5.7986 0.7663 2.7368 34 1 4.7822 -0.4875 5.6783 35 1 5.7975 0.2148 4.3960 36 1 7.8607 0.8208 7.3287 37 1 1.6891 0.9846 4.3535 38 1 2.6804 1.3990 5.7724 39 1 3.0319 -1.0416 6.1984 40 1 1.0136 -1.3515 3.9298 41 1 2.7318 -1.8108 3.8603 42 1 1.6262 -2.6667 4.9612 43 1 0.1121 -0.1877 5.9485 44 1 0.7241 -1.5028 6.9797 45 1 1.1882 0.1823 7.3172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799124696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:54 Heat of formation + Delta-G solvation = -13.482240 kcal Electronic energy + Delta-G solvation = -23635.041528 eV Core-core repulsion = 20459.934258 eV Total energy + Delta-G solvation = -3175.107270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.22145 -37.10409 -36.12454 -34.80200 -33.56804 -32.24138 -30.16989 -27.42501 -26.58780 -26.30925 -25.88710 -24.07524 -22.41555 -20.53038 -19.77453 -19.10939 -18.79611 -16.63736 -16.38447 -16.32619 -15.09467 -14.85796 -14.66548 -14.41347 -13.90386 -13.81779 -13.51875 -13.11085 -12.92834 -12.84454 -12.42234 -12.25623 -11.87504 -11.82769 -11.65140 -11.38882 -11.29509 -11.13433 -11.01880 -10.82227 -10.78907 -10.37095 -10.30005 -10.05444 -9.92741 -9.75232 -9.74353 -9.52076 -8.93532 -8.45017 -8.41166 -7.22474 -6.05322 -4.13521 2.16191 2.99967 3.28051 3.33029 3.36624 3.43461 4.39572 4.76881 4.89949 4.95089 5.03062 5.15060 5.26175 5.32213 5.45979 5.57639 5.61379 5.64096 5.70209 5.78524 5.85601 5.94091 6.12080 6.27316 6.29553 6.36099 6.40852 6.44070 6.53059 6.56192 6.56938 6.64930 6.67580 6.86923 6.88008 6.99941 7.04720 7.23969 7.40981 7.51995 7.87592 8.00585 8.21427 8.26115 8.60003 8.95473 9.53146 10.99491 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.006042 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.919526 B = 4633.245875 C = 5461.326275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.170 4.170 3 C 0.154 3.846 4 N -0.617 5.617 5 C 0.112 3.888 6 C -0.124 4.124 7 C 0.062 3.938 8 H 0.081 0.919 9 N -0.518 5.518 10 C 0.185 3.815 11 C -0.549 4.549 12 H 0.056 0.944 13 C 0.069 3.931 14 N -0.890 5.890 15 Si 0.885 3.115 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.053 3.947 20 C -0.088 4.088 21 C -0.130 4.130 22 C -0.142 4.142 23 C 0.532 3.468 24 O -0.536 6.536 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 -2.397 -12.101 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.189 4.189 3 C 0.032 3.968 4 N -0.351 5.351 5 C -0.011 4.011 6 C -0.162 4.162 7 C -0.050 4.050 8 H 0.099 0.901 9 N -0.244 5.244 10 C 0.060 3.940 11 C -0.588 4.588 12 H 0.074 0.926 13 C -0.134 4.134 14 N -0.528 5.528 15 Si 0.713 3.287 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.076 4.076 20 C -0.107 4.107 21 C -0.187 4.187 22 C -0.200 4.200 23 C 0.320 3.680 24 O -0.412 6.412 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.559 -2.624 -12.202 14.591 hybrid contribution 0.372 1.505 1.200 1.960 sum -7.188 -1.119 -11.001 13.189 Atomic orbital electron populations 1.23826 0.95893 1.01806 0.99886 1.23299 0.96285 0.98982 1.00382 1.20387 0.92021 0.95685 0.88741 1.48338 1.13301 1.62390 1.11100 1.22055 0.80535 0.99439 0.99030 1.22660 0.97651 1.02185 0.93680 1.22105 0.91884 0.97286 0.93722 0.90107 1.62557 1.05173 1.35510 1.21122 1.19865 0.86739 0.96419 0.90952 1.21671 1.08108 1.03708 1.25286 0.92620 1.24894 0.95792 0.96074 0.96637 1.69918 1.12464 1.31757 1.38701 0.86760 0.77501 0.83814 0.80595 1.20279 1.21243 1.20283 1.22188 0.92626 0.96141 0.96599 1.21024 0.97601 0.95926 0.96142 1.21652 1.01259 0.97229 0.98573 1.21779 0.98034 1.00802 0.99392 1.21234 0.89059 0.75041 0.82634 1.90624 1.26484 1.46322 1.77791 0.88506 0.88564 0.87235 0.90100 0.90021 0.91375 0.91121 0.90653 0.87698 0.94577 0.94436 0.92773 0.91272 0.93687 0.90714 0.94105 0.91779 0.94438 0.93403 0.93370 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 14.32 29.01 0.42 -1.56 16 2 C -0.17 -2.01 9.85 -36.03 -0.35 -2.37 16 3 C 0.15 1.86 6.37 -5.20 -0.03 1.83 16 4 N -0.62 -9.13 2.92 -173.69 -0.51 -9.64 16 5 C 0.11 1.46 7.35 -3.12 -0.02 1.43 16 6 C -0.12 -1.96 6.67 -25.10 -0.17 -2.13 16 7 C 0.06 1.19 2.31 -67.72 -0.16 1.04 16 8 H 0.08 1.77 6.63 -51.93 -0.34 1.42 16 9 N -0.52 -10.62 3.93 -228.10 -0.90 -11.52 16 10 C 0.19 4.42 4.76 -4.97 -0.02 4.40 16 11 C -0.55 -14.38 7.43 -34.44 -0.26 -14.64 16 12 H 0.06 1.49 5.94 -52.48 -0.31 1.18 16 13 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 14 N -0.89 -25.03 13.29 55.43 0.74 -24.30 16 15 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.05 1.09 4.08 -3.83 -0.02 1.07 16 20 C -0.09 -1.63 2.91 -90.62 -0.26 -1.89 16 21 C -0.13 -2.16 9.07 37.16 0.34 -1.83 16 22 C -0.14 -2.31 9.19 37.16 0.34 -1.97 16 23 C 0.53 9.91 6.90 -10.72 -0.07 9.83 16 24 O -0.54 -11.49 15.82 5.56 0.09 -11.41 16 25 H 0.10 0.96 8.06 -52.48 -0.42 0.53 16 26 H 0.10 1.06 7.84 -52.48 -0.41 0.65 16 27 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.08 1.04 7.59 -51.93 -0.39 0.65 16 29 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.10 1.80 5.96 -51.93 -0.31 1.49 16 34 H 0.04 0.94 6.49 -51.93 -0.34 0.60 16 35 H 0.04 0.93 6.12 -51.93 -0.32 0.61 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.07 1.48 5.43 -51.93 -0.28 1.20 16 38 H 0.04 1.04 6.38 -51.93 -0.33 0.71 16 39 H 0.07 1.53 6.56 -51.93 -0.34 1.19 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.12 7.70 -51.94 -0.40 0.72 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -29.32 353.83 -8.21 -37.52 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.57 Total: 2.99 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.37 Total: -5.02 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.67 Total: -45.46 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.32 -8.21 -37.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799124696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.041 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds