Wall clock time and date at job start Tue Mar 31 2020 02:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99725 * 2 1 4 4 N 1.46500 * 109.47443 * 124.99534 * 3 2 1 5 5 C 1.46768 * 124.35013 * 89.99544 * 4 3 2 6 6 C 1.54479 * 105.47211 * 162.98733 * 5 4 3 7 7 C 1.54629 * 101.76728 * 25.41615 * 6 5 4 8 8 H 1.08997 * 110.48447 * 216.39033 * 7 6 5 9 9 N 1.46901 * 110.48587 * 93.87962 * 7 6 5 10 10 C 1.46904 * 110.99668 * 62.44975 * 9 7 6 11 11 C 1.50698 * 109.47076 * 60.24362 * 10 9 7 12 12 H 1.08012 * 120.00152 * 3.48084 * 11 10 9 13 13 C 1.37873 * 120.00200 * 183.48560 * 11 10 9 14 14 N 1.31513 * 119.99904 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00242 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47120 * 59.99748 * 15 13 11 17 17 H 1.48497 * 109.47049 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46964 * 299.99577 * 15 13 11 19 19 C 1.46897 * 110.99686 * 186.40427 * 9 7 6 20 20 C 1.53001 * 109.46899 * 164.48077 * 19 9 7 21 21 C 1.53003 * 109.46934 * 296.52181 * 20 19 9 22 22 C 1.53001 * 109.47077 * 176.52001 * 20 19 9 23 23 C 1.34741 * 124.29961 * 269.96298 * 4 3 2 24 24 O 1.21279 * 125.12488 * 0.41256 * 23 4 3 25 25 H 1.08003 * 119.99733 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99957 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00007 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47692 * 4.99188 * 3 2 1 29 29 H 1.09009 * 109.47075 * 244.99250 * 3 2 1 30 30 H 1.08997 * 110.24312 * 43.98137 * 5 4 3 31 31 H 1.09005 * 110.24151 * 281.98387 * 5 4 3 32 32 H 1.09002 * 110.96931 * 267.29324 * 6 5 4 33 33 H 1.09005 * 110.96872 * 143.53832 * 6 5 4 34 34 H 1.09006 * 109.46426 * 180.23759 * 10 9 7 35 35 H 1.08996 * 109.47565 * 300.23973 * 10 9 7 36 36 H 0.97002 * 120.00318 * 179.97438 * 14 13 11 37 37 H 1.08995 * 109.47259 * 44.47901 * 19 9 7 38 38 H 1.08999 * 109.47327 * 284.48135 * 19 9 7 39 39 H 1.08996 * 109.47152 * 56.52217 * 20 19 9 40 40 H 1.08996 * 109.46742 * 299.99781 * 21 20 19 41 41 H 1.08989 * 109.47212 * 60.00188 * 21 20 19 42 42 H 1.08998 * 109.46797 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.46995 * 60.00183 * 22 20 19 44 44 H 1.08998 * 109.46921 * 179.97438 * 22 20 19 45 45 H 1.08998 * 109.47540 * 300.00056 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3321 1.1315 5 6 4.3791 0.8509 1.0762 6 6 5.0778 1.4638 2.3101 7 6 3.8859 1.6843 3.2702 8 1 4.0216 2.6022 3.8422 9 7 3.7333 0.5353 4.1727 10 6 4.9201 0.3726 5.0230 11 6 5.1147 1.6130 5.8565 12 1 4.3947 2.4165 5.8054 13 6 6.2120 1.7223 6.6841 14 7 7.0885 0.7438 6.7467 15 14 6.4536 3.2601 7.7167 16 1 5.2960 3.4291 8.6314 17 1 7.6993 3.1299 8.5144 18 1 6.5573 4.4434 6.8256 19 6 2.5164 0.6626 4.9857 20 6 2.1803 -0.6906 5.6157 21 6 1.8652 -1.7027 4.5124 22 6 0.9638 -0.5388 6.5312 23 6 2.6863 1.8026 2.3561 24 8 1.6081 2.2539 2.6798 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0894 29 1 2.6214 1.4026 -0.9314 30 1 4.8611 1.1937 0.1606 31 1 4.4029 -0.2375 1.1311 32 1 5.5557 2.4104 2.0577 33 1 5.7986 0.7663 2.7368 34 1 4.7822 -0.4875 5.6783 35 1 5.7975 0.2148 4.3960 36 1 7.8607 0.8208 7.3287 37 1 1.6891 0.9846 4.3535 38 1 2.6804 1.3990 5.7724 39 1 3.0319 -1.0416 6.1984 40 1 1.0136 -1.3515 3.9298 41 1 2.7318 -1.8108 3.8603 42 1 1.6262 -2.6667 4.9612 43 1 0.1121 -0.1877 5.9485 44 1 0.7241 -1.5028 6.9797 45 1 1.1882 0.1823 7.3172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799124696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:53 Heat of formation + Delta-G solvation = -30.659512 kcal Electronic energy + Delta-G solvation = -23635.786391 eV Core-core repulsion = 20459.934258 eV Total energy + Delta-G solvation = -3175.852133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63789 -38.70408 -37.51882 -36.03460 -35.13467 -34.02213 -31.45589 -29.21747 -27.95994 -27.79397 -27.06216 -25.88095 -23.94919 -21.87268 -20.97045 -20.62566 -20.18854 -18.51376 -17.79009 -17.74420 -16.77247 -16.37841 -16.10227 -15.64039 -15.43078 -15.25823 -14.84543 -14.45390 -14.43193 -14.20682 -14.11447 -13.70837 -13.42496 -13.14997 -13.02571 -12.93101 -12.82775 -12.59867 -12.44140 -12.30610 -12.24273 -12.03047 -11.90940 -11.77680 -11.65732 -11.48909 -11.30094 -10.69581 -10.53696 -10.26471 -9.64537 -9.05569 -8.13297 -6.29215 1.21848 1.36138 1.37678 1.44922 1.53867 2.26961 2.38488 3.12456 3.33600 3.47953 3.76279 3.99848 4.05625 4.14423 4.20265 4.23443 4.32383 4.45413 4.47651 4.68645 4.72145 4.75574 4.82964 4.84018 4.86215 4.97899 5.02556 5.05864 5.12139 5.19262 5.20487 5.23398 5.34782 5.42153 5.54921 5.57074 5.64070 5.68898 5.80195 5.83280 6.06507 6.12560 6.27125 6.44786 6.88616 7.19582 7.40404 8.88735 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.006042 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.919526 B = 4633.245875 C = 5461.326275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.181 4.181 3 C 0.149 3.851 4 N -0.605 5.605 5 C 0.118 3.882 6 C -0.120 4.120 7 C 0.052 3.948 8 H 0.046 0.954 9 N -0.505 5.505 10 C 0.203 3.797 11 C -0.553 4.553 12 H 0.043 0.957 13 C 0.025 3.975 14 N -0.917 5.917 15 Si 0.942 3.058 16 H -0.279 1.279 17 H -0.279 1.279 18 H -0.272 1.272 19 C 0.060 3.940 20 C -0.088 4.088 21 C -0.118 4.118 22 C -0.137 4.137 23 C 0.529 3.471 24 O -0.572 6.572 25 H 0.110 0.890 26 H 0.094 0.906 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.013 0.987 35 H 0.030 0.970 36 H 0.265 0.735 37 H 0.065 0.935 38 H 0.011 0.989 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 -2.893 -13.801 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.200 4.200 3 C 0.029 3.971 4 N -0.337 5.337 5 C -0.004 4.004 6 C -0.158 4.158 7 C -0.060 4.060 8 H 0.064 0.936 9 N -0.229 5.229 10 C 0.077 3.923 11 C -0.592 4.592 12 H 0.061 0.939 13 C -0.175 4.175 14 N -0.557 5.557 15 Si 0.768 3.232 16 H -0.205 1.205 17 H -0.204 1.204 18 H -0.197 1.197 19 C -0.068 4.068 20 C -0.107 4.107 21 C -0.175 4.175 22 C -0.195 4.195 23 C 0.317 3.683 24 O -0.451 6.451 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.135 0.865 28 H 0.089 0.911 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.031 0.969 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.871 -3.133 -13.946 16.318 hybrid contribution 0.437 1.663 1.682 2.405 sum -7.434 -1.471 -12.264 14.416 Atomic orbital electron populations 1.24003 0.95978 1.02452 0.98923 1.23341 0.96525 0.98958 1.01219 1.20653 0.91952 0.95665 0.88855 1.48385 1.14385 1.60559 1.10393 1.22195 0.79226 0.99761 0.99217 1.22635 0.96238 1.02844 0.94110 1.22189 0.94567 0.95143 0.94112 0.93582 1.62529 1.03909 1.36209 1.20291 1.19517 0.87688 0.94575 0.90508 1.21842 1.07720 1.04077 1.25575 0.93907 1.25547 0.95654 0.98634 0.97692 1.70005 1.12922 1.33238 1.39501 0.85866 0.77409 0.80789 0.79162 1.20482 1.20422 1.19727 1.22131 0.92431 0.96747 0.95494 1.21019 0.97803 0.95015 0.96886 1.21529 1.00787 0.97589 0.97640 1.21735 0.97050 1.01920 0.98764 1.20992 0.88079 0.75444 0.83805 1.90596 1.27536 1.48299 1.78716 0.87140 0.88773 0.86539 0.91115 0.86259 0.87019 0.90305 0.89296 0.89144 0.96917 0.95221 0.92612 0.91680 0.97019 0.93111 0.93771 0.92904 0.92172 0.92608 0.91014 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 14.32 67.78 0.97 -2.61 16 2 C -0.18 -3.83 9.85 25.64 0.25 -3.57 16 3 C 0.15 3.21 6.37 85.63 0.55 3.76 16 4 N -0.60 -16.66 2.92 -821.83 -2.40 -19.07 16 5 C 0.12 2.71 7.35 86.83 0.64 3.35 16 6 C -0.12 -3.72 6.67 31.65 0.21 -3.51 16 7 C 0.05 2.05 2.31 44.91 0.10 2.15 16 8 H 0.05 2.13 6.63 -2.39 -0.02 2.11 16 9 N -0.50 -21.33 3.93 -875.56 -3.44 -24.78 16 10 C 0.20 10.06 4.76 85.56 0.41 10.46 16 11 C -0.55 -30.03 7.43 25.60 0.19 -29.84 16 12 H 0.04 2.41 5.94 -2.90 -0.02 2.39 16 13 C 0.02 1.37 5.46 84.65 0.46 1.83 16 14 N -0.92 -52.36 13.29 21.45 0.28 -52.08 16 15 Si 0.94 43.79 29.54 68.60 2.03 45.82 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 C 0.06 2.58 4.08 86.30 0.35 2.94 16 20 C -0.09 -3.30 2.91 -10.79 -0.03 -3.33 16 21 C -0.12 -3.80 9.07 71.98 0.65 -3.15 16 22 C -0.14 -4.37 9.19 71.98 0.66 -3.70 16 23 C 0.53 19.64 6.90 87.85 0.61 20.24 16 24 O -0.57 -24.88 15.82 -3.03 -0.05 -24.93 16 25 H 0.11 1.92 8.06 -2.91 -0.02 1.89 16 26 H 0.09 1.94 7.84 -2.91 -0.02 1.92 16 27 H 0.12 2.31 8.06 -2.91 -0.02 2.28 16 28 H 0.07 1.70 7.59 -2.39 -0.02 1.68 16 29 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.09 3.09 5.96 -2.38 -0.01 3.08 16 34 H 0.01 0.69 6.49 -2.38 -0.02 0.68 16 35 H 0.03 1.52 6.12 -2.39 -0.01 1.51 16 36 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.06 2.87 5.43 -2.39 -0.01 2.85 16 38 H 0.01 0.56 6.38 -2.39 -0.02 0.55 16 39 H 0.05 2.14 6.56 -2.39 -0.02 2.12 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.05 1.80 7.70 -2.39 -0.02 1.78 16 42 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -65.14 353.83 3.39 -61.75 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.95 Total: 18.24 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 6.02 Total: -4.96 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -5.56 Total: -95.92 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.14 3.39 -61.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799124696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.095 kcal (2) G-P(sol) polarization free energy of solvation -65.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds