Wall clock time and date at job start Tue Mar 31 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 C 1.50696 * 109.47327 * 240.00299 * 2 1 3 5 5 H 1.08001 * 120.00146 * 237.01063 * 4 2 1 6 6 C 1.37882 * 120.00109 * 56.99916 * 4 2 1 7 7 N 1.31522 * 119.99741 * 5.55100 * 6 4 2 8 8 Si 1.86794 * 120.00085 * 185.54396 * 6 4 2 9 9 H 1.48504 * 109.47268 * 85.00703 * 8 6 4 10 10 H 1.48500 * 109.47323 * 205.00116 * 8 6 4 11 11 H 1.48495 * 109.47381 * 325.00311 * 8 6 4 12 12 C 1.52996 * 109.47234 * 119.99734 * 2 1 3 13 13 N 1.46491 * 109.47596 * 300.00226 * 12 2 1 14 14 C 1.34775 * 120.00196 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00213 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00112 * 179.97438 * 14 13 12 17 17 C 1.46502 * 120.00139 * 179.97438 * 16 14 13 18 18 C 1.55932 * 115.91964 * 297.93664 * 17 16 14 19 19 C 1.54584 * 104.64307 * 199.96833 * 18 17 16 20 20 C 1.55936 * 104.64231 * 359.97438 * 19 18 17 21 21 C 1.55919 * 105.22928 * 289.53251 * 20 19 18 22 22 C 1.55923 * 115.92103 * 62.05858 * 17 16 14 23 23 C 1.56951 * 100.64956 * 33.78160 * 20 19 18 24 24 H 1.09004 * 109.46745 * 293.93292 * 1 2 3 25 25 H 1.08999 * 109.47220 * 53.93158 * 1 2 3 26 26 H 1.08999 * 109.46991 * 173.93549 * 1 2 3 27 27 H 1.09004 * 109.47706 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47260 * 300.00078 * 3 2 1 29 29 H 1.09005 * 109.47257 * 60.00236 * 3 2 1 30 30 H 0.96995 * 119.99282 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47222 * 179.97438 * 12 2 1 32 32 H 1.09006 * 109.46932 * 60.00453 * 12 2 1 33 33 H 0.96999 * 119.99944 * 359.97438 * 13 12 2 34 34 H 0.96999 * 120.00028 * 359.97438 * 16 14 13 35 35 H 1.09001 * 110.40168 * 318.75923 * 18 17 16 36 36 H 1.08999 * 110.39940 * 81.17810 * 18 17 16 37 37 H 1.09003 * 110.40077 * 241.21341 * 19 18 17 38 38 H 1.08994 * 110.50052 * 118.83728 * 19 18 17 39 39 H 1.08994 * 115.91839 * 160.03145 * 20 19 18 40 40 H 1.09004 * 110.40009 * 189.25799 * 21 20 19 41 41 H 1.08997 * 110.40849 * 311.56062 * 21 20 19 42 42 H 1.08995 * 110.40739 * 278.82304 * 22 17 16 43 43 H 1.08996 * 110.40212 * 41.24578 * 22 17 16 44 44 H 1.09000 * 112.02652 * 189.69096 * 23 20 19 45 45 H 1.08997 * 112.02823 * 63.17029 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6925 -1.5594 -1.1321 6 6 1.6491 -0.2764 -2.4818 7 7 0.9350 0.8210 -2.6071 8 14 2.1441 -1.2469 -3.9991 9 1 1.1618 -2.3360 -4.2324 10 1 2.1706 -0.3438 -5.1776 11 1 3.4931 -1.8326 -3.7938 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5752 -1.4805 3.7810 16 7 1.4281 0.1442 4.7700 17 6 1.7812 -0.3570 6.1005 18 6 1.2771 -1.7920 6.4443 19 6 1.3164 -1.8606 7.9881 20 6 1.8412 -0.4608 8.4317 21 6 3.3424 -0.4341 8.0110 22 6 3.3019 -0.3636 6.4450 23 6 1.2120 0.4506 7.3196 24 1 -0.3633 0.4169 0.9394 25 1 -0.3633 0.6050 -0.8307 26 1 -0.3633 -1.0219 -0.1086 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 0.6657 1.1264 -3.4874 31 1 3.1301 -0.7216 1.2490 32 1 1.6767 -1.7489 1.2492 33 1 0.9943 0.7582 2.3564 34 1 0.8714 0.9335 4.6810 35 1 0.2583 -1.9334 6.0834 36 1 1.9412 -2.5413 6.0135 37 1 1.9999 -2.6437 8.3163 38 1 0.3178 -2.0366 8.3879 39 1 1.6302 -0.1778 9.4628 40 1 3.8377 0.4437 8.4260 41 1 3.8453 -1.3438 8.3389 42 1 3.7853 -1.2403 6.0143 43 1 3.7770 0.5488 6.0848 44 1 1.6029 1.4675 7.3549 45 1 0.1225 0.4354 7.3467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838754276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:19 Heat of formation + Delta-G solvation = -40.909562 kcal Electronic energy + Delta-G solvation = -22811.275783 eV Core-core repulsion = 19634.979175 eV Total energy + Delta-G solvation = -3176.296608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.57288 -38.90099 -36.33366 -33.62685 -33.08686 -30.76164 -30.44782 -28.22610 -27.71346 -25.70170 -25.49339 -24.62415 -22.23314 -20.95467 -20.14017 -18.94375 -18.52230 -17.81117 -16.68261 -15.77980 -15.44069 -15.03418 -14.69691 -14.68960 -14.50387 -13.60111 -12.94105 -12.89032 -12.73189 -12.65853 -12.33817 -12.11905 -11.82795 -11.59030 -11.37762 -11.22571 -11.16490 -11.03183 -10.99465 -10.83891 -10.67289 -10.43586 -10.35796 -10.18810 -10.16731 -9.60468 -9.59140 -9.27511 -8.83225 -8.76923 -8.38364 -8.14133 -6.00643 -4.09137 3.07333 3.30528 3.36847 3.40992 3.68529 4.24326 4.36732 4.41323 4.42023 4.76349 5.05449 5.16256 5.22312 5.25293 5.26563 5.34225 5.42477 5.45842 5.59708 5.69060 5.90728 5.92061 5.94274 6.12684 6.22165 6.25216 6.31878 6.34306 6.40176 6.54338 6.83274 6.83743 6.85205 6.94929 7.05960 7.14772 7.36143 7.46664 7.58593 7.72714 8.02247 8.14589 8.40724 8.55649 8.90614 9.12702 9.56099 11.01443 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.042476 B = 0.003357 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.042308 B = 8338.778446 C = 8477.115039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.152 3.848 13 N -0.734 5.734 14 C 0.700 3.300 15 O -0.593 6.593 16 N -0.732 5.732 17 C 0.178 3.822 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.102 4.102 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.125 4.125 24 H 0.006 0.994 25 H 0.080 0.920 26 H 0.028 0.972 27 H 0.026 0.974 28 H 0.084 0.916 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.393 0.607 34 H 0.395 0.605 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 1.458 19.899 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.029 3.971 13 N -0.389 5.389 14 C 0.400 3.600 15 O -0.471 6.471 16 N -0.386 5.386 17 C 0.090 3.910 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.120 4.120 21 C -0.156 4.156 22 C -0.162 4.162 23 C -0.163 4.163 24 H 0.025 0.975 25 H 0.099 0.901 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.229 0.771 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.496 0.633 19.770 19.787 hybrid contribution -0.300 0.240 -1.053 1.121 sum -0.796 0.872 18.717 18.754 Atomic orbital electron populations 1.21789 0.97770 1.00086 0.98865 1.18360 0.92751 0.92767 0.90618 1.21832 0.98561 0.98353 0.99897 1.20978 1.29281 1.14313 0.89941 0.92423 1.24878 0.95010 0.94783 0.98790 1.69833 1.37935 1.21420 1.23232 0.86596 0.79052 0.79908 0.82365 1.20639 1.21370 1.19956 1.21543 0.97798 0.95389 0.82400 1.45511 1.55726 1.33034 1.04606 1.16044 0.80472 0.83016 0.80504 1.90861 1.42866 1.27503 1.85911 1.44592 1.57273 1.32939 1.03805 1.21844 0.94737 0.93792 0.80608 1.22824 1.01521 0.97005 0.94859 1.22602 1.00827 0.96591 0.95512 1.23443 0.95512 0.95335 0.97757 1.22980 0.95647 1.01578 0.95359 1.23209 0.95628 1.02740 0.94597 1.23719 1.00172 0.98411 0.94028 0.97512 0.90106 0.95240 0.95503 0.89682 0.97633 0.93055 0.93048 0.93018 0.77287 0.77144 0.92040 0.90444 0.91611 0.91868 0.88279 0.91814 0.91593 0.90460 0.91963 0.90836 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.03 37.16 0.30 -2.59 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.93 8.11 37.16 0.30 -2.62 16 4 C -0.51 -13.41 8.01 -34.44 -0.28 -13.68 16 5 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 6 C 0.07 1.77 5.13 -17.81 -0.09 1.68 16 7 N -0.89 -23.75 9.45 55.43 0.52 -23.22 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 C 0.15 3.30 4.50 -4.05 -0.02 3.28 16 13 N -0.73 -13.39 4.91 -65.23 -0.32 -13.71 16 14 C 0.70 12.59 8.32 -86.92 -0.72 11.87 16 15 O -0.59 -12.72 14.61 5.29 0.08 -12.64 16 16 N -0.73 -9.99 5.51 -47.58 -0.26 -10.25 16 17 C 0.18 2.19 1.37 -126.57 -0.17 2.02 16 18 C -0.12 -1.54 5.51 -24.33 -0.13 -1.67 16 19 C -0.12 -1.10 6.23 -24.33 -0.15 -1.25 16 20 C -0.10 -0.85 5.14 -85.35 -0.44 -1.29 16 21 C -0.12 -1.10 6.33 -23.11 -0.15 -1.24 16 22 C -0.12 -1.54 5.61 -23.11 -0.13 -1.66 16 23 C -0.13 -1.14 6.26 -22.47 -0.14 -1.28 16 24 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 25 H 0.08 2.01 6.25 -51.93 -0.32 1.68 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 2.13 6.10 -51.93 -0.32 1.82 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.72 8.31 -40.82 -0.34 6.39 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.39 6.43 6.17 -40.82 -0.25 6.18 16 34 H 0.39 4.34 8.77 -40.82 -0.36 3.98 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.16 7.39 -51.93 -0.38 0.78 16 37 H 0.07 0.59 7.87 -51.93 -0.41 0.19 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 42 H 0.08 1.16 7.39 -51.93 -0.38 0.77 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 341.42 15.07 5.15 5.15 Total: -1.00 -28.89 341.42 -9.49 -38.39 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.73 Total: 7.66 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.90 Total: -7.23 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.06 Total: -47.18 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.89 -9.49 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838754276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.522 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds