Wall clock time and date at job start Tue Mar 31 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 C 1.50696 * 109.47327 * 240.00299 * 2 1 3 5 5 H 1.08001 * 120.00146 * 237.01063 * 4 2 1 6 6 C 1.37882 * 120.00109 * 56.99916 * 4 2 1 7 7 N 1.31522 * 119.99741 * 5.55100 * 6 4 2 8 8 Si 1.86794 * 120.00085 * 185.54396 * 6 4 2 9 9 H 1.48504 * 109.47268 * 85.00703 * 8 6 4 10 10 H 1.48500 * 109.47323 * 205.00116 * 8 6 4 11 11 H 1.48495 * 109.47381 * 325.00311 * 8 6 4 12 12 C 1.52996 * 109.47234 * 119.99734 * 2 1 3 13 13 N 1.46491 * 109.47596 * 300.00226 * 12 2 1 14 14 C 1.34775 * 120.00196 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00213 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00112 * 179.97438 * 14 13 12 17 17 C 1.46502 * 120.00139 * 179.97438 * 16 14 13 18 18 C 1.55932 * 115.91964 * 297.93664 * 17 16 14 19 19 C 1.54584 * 104.64307 * 199.96833 * 18 17 16 20 20 C 1.55936 * 104.64231 * 359.97438 * 19 18 17 21 21 C 1.55919 * 105.22928 * 289.53251 * 20 19 18 22 22 C 1.55923 * 115.92103 * 62.05858 * 17 16 14 23 23 C 1.56951 * 100.64956 * 33.78160 * 20 19 18 24 24 H 1.09004 * 109.46745 * 293.93292 * 1 2 3 25 25 H 1.08999 * 109.47220 * 53.93158 * 1 2 3 26 26 H 1.08999 * 109.46991 * 173.93549 * 1 2 3 27 27 H 1.09004 * 109.47706 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47260 * 300.00078 * 3 2 1 29 29 H 1.09005 * 109.47257 * 60.00236 * 3 2 1 30 30 H 0.96995 * 119.99282 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47222 * 179.97438 * 12 2 1 32 32 H 1.09006 * 109.46932 * 60.00453 * 12 2 1 33 33 H 0.96999 * 119.99944 * 359.97438 * 13 12 2 34 34 H 0.96999 * 120.00028 * 359.97438 * 16 14 13 35 35 H 1.09001 * 110.40168 * 318.75923 * 18 17 16 36 36 H 1.08999 * 110.39940 * 81.17810 * 18 17 16 37 37 H 1.09003 * 110.40077 * 241.21341 * 19 18 17 38 38 H 1.08994 * 110.50052 * 118.83728 * 19 18 17 39 39 H 1.08994 * 115.91839 * 160.03145 * 20 19 18 40 40 H 1.09004 * 110.40009 * 189.25799 * 21 20 19 41 41 H 1.08997 * 110.40849 * 311.56062 * 21 20 19 42 42 H 1.08995 * 110.40739 * 278.82304 * 22 17 16 43 43 H 1.08996 * 110.40212 * 41.24578 * 22 17 16 44 44 H 1.09000 * 112.02652 * 189.69096 * 23 20 19 45 45 H 1.08997 * 112.02823 * 63.17029 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6925 -1.5594 -1.1321 6 6 1.6491 -0.2764 -2.4818 7 7 0.9350 0.8210 -2.6071 8 14 2.1441 -1.2469 -3.9991 9 1 1.1618 -2.3360 -4.2324 10 1 2.1706 -0.3438 -5.1776 11 1 3.4931 -1.8326 -3.7938 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5752 -1.4805 3.7810 16 7 1.4281 0.1442 4.7700 17 6 1.7812 -0.3570 6.1005 18 6 1.2771 -1.7920 6.4443 19 6 1.3164 -1.8606 7.9881 20 6 1.8412 -0.4608 8.4317 21 6 3.3424 -0.4341 8.0110 22 6 3.3019 -0.3636 6.4450 23 6 1.2120 0.4506 7.3196 24 1 -0.3633 0.4169 0.9394 25 1 -0.3633 0.6050 -0.8307 26 1 -0.3633 -1.0219 -0.1086 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 0.6657 1.1264 -3.4874 31 1 3.1301 -0.7216 1.2490 32 1 1.6767 -1.7489 1.2492 33 1 0.9943 0.7582 2.3564 34 1 0.8714 0.9335 4.6810 35 1 0.2583 -1.9334 6.0834 36 1 1.9412 -2.5413 6.0135 37 1 1.9999 -2.6437 8.3163 38 1 0.3178 -2.0366 8.3879 39 1 1.6302 -0.1778 9.4628 40 1 3.8377 0.4437 8.4260 41 1 3.8453 -1.3438 8.3389 42 1 3.7853 -1.2403 6.0143 43 1 3.7770 0.5488 6.0848 44 1 1.6029 1.4675 7.3549 45 1 0.1225 0.4354 7.3467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838754276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:18 Heat of formation + Delta-G solvation = -58.141119 kcal Electronic energy + Delta-G solvation = -22812.022999 eV Core-core repulsion = 19634.979175 eV Total energy + Delta-G solvation = -3177.043825 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62462 -40.22630 -38.10708 -35.05927 -34.70498 -32.59229 -31.31687 -29.20749 -28.56871 -27.56768 -27.40230 -26.39774 -23.10450 -22.38288 -20.99876 -20.57346 -19.89807 -19.05739 -17.78366 -17.68073 -16.61174 -16.51444 -16.02075 -15.98770 -15.89134 -15.20960 -14.71902 -14.61176 -14.02263 -13.68768 -13.48301 -13.27112 -13.22821 -13.08280 -12.77720 -12.63158 -12.59813 -12.52809 -12.23847 -12.14827 -11.99205 -11.85628 -11.76620 -11.48236 -11.43449 -11.21936 -11.05500 -10.94608 -10.71258 -10.39570 -10.16499 -9.62282 -8.03329 -6.17624 1.42688 1.44977 1.52700 1.78767 2.23473 2.46129 3.20565 3.31015 3.50280 3.60854 3.62506 4.26162 4.30677 4.33924 4.42266 4.46680 4.53188 4.53452 4.55002 4.58338 4.71655 4.89719 4.95428 5.00822 5.05511 5.10104 5.10718 5.16067 5.19505 5.21144 5.24177 5.35126 5.38484 5.41048 5.41669 5.64102 5.66899 5.68057 5.75119 6.12147 6.13709 6.21605 6.43237 6.86182 7.21319 7.49614 7.69986 8.96319 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.042476 B = 0.003357 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.042308 B = 8338.778446 C = 8477.115039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.052 3.948 3 C -0.118 4.118 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.170 3.830 13 N -0.728 5.728 14 C 0.697 3.303 15 O -0.632 6.632 16 N -0.714 5.714 17 C 0.159 3.841 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.088 4.088 21 C -0.112 4.112 22 C -0.126 4.126 23 C -0.112 4.112 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.404 0.596 34 H 0.411 0.589 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 2.758 22.236 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.051 3.949 3 C -0.175 4.175 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.046 3.954 13 N -0.383 5.383 14 C 0.397 3.603 15 O -0.513 6.513 16 N -0.369 5.369 17 C 0.072 3.928 18 C -0.165 4.165 19 C -0.151 4.151 20 C -0.106 4.106 21 C -0.150 4.150 22 C -0.165 4.165 23 C -0.150 4.150 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.241 0.759 34 H 0.248 0.752 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.526 1.975 22.142 22.282 hybrid contribution 0.038 -0.194 -1.771 1.782 sum -1.488 1.780 20.371 20.503 Atomic orbital electron populations 1.21624 0.97002 0.99099 0.99661 1.18355 0.93278 0.93047 0.90187 1.21662 0.97805 0.97796 1.00285 1.21259 1.29605 1.14461 0.91681 0.93851 1.25446 0.95157 0.95567 1.00871 1.69929 1.38143 1.21918 1.23671 0.85781 0.78522 0.78833 0.79719 1.20404 1.20770 1.20165 1.21065 0.96483 0.94592 0.83302 1.45207 1.55988 1.33230 1.03900 1.16203 0.80188 0.82752 0.81161 1.90847 1.44585 1.29375 1.86505 1.44445 1.56371 1.32780 1.03279 1.22197 0.95064 0.94773 0.80771 1.22798 0.99949 0.96240 0.97472 1.22596 1.02083 0.97737 0.92687 1.23530 0.93980 0.93991 0.99107 1.22973 0.97095 1.02536 0.92416 1.23187 0.95493 1.00531 0.97326 1.23713 1.01009 0.98645 0.91623 0.94368 0.92105 0.96464 0.96510 0.91871 0.94519 0.93011 0.94947 0.94871 0.75893 0.75220 0.92790 0.94217 0.91556 0.90075 0.84959 0.89973 0.91528 0.94236 0.92705 0.89398 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.03 71.98 0.58 -4.64 16 2 C 0.05 2.45 0.50 -52.93 -0.03 2.43 16 3 C -0.12 -5.30 8.11 71.98 0.58 -4.72 16 4 C -0.53 -28.68 8.01 25.60 0.20 -28.47 16 5 H 0.04 2.40 7.75 -2.91 -0.02 2.38 16 6 C 0.03 1.58 5.13 84.65 0.43 2.01 16 7 N -0.90 -48.27 9.45 21.45 0.20 -48.07 16 8 Si 0.94 43.13 29.54 68.60 2.03 45.16 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.17 7.55 4.50 86.38 0.39 7.94 16 13 N -0.73 -26.22 4.91 -478.55 -2.35 -28.57 16 14 C 0.70 25.18 8.32 179.05 1.49 26.67 16 15 O -0.63 -28.20 14.61 -3.99 -0.06 -28.26 16 16 N -0.71 -18.70 5.51 -422.70 -2.33 -21.03 16 17 C 0.16 3.73 1.37 7.00 0.01 3.74 16 18 C -0.13 -3.11 5.51 32.15 0.18 -2.94 16 19 C -0.11 -1.86 6.23 32.15 0.20 -1.66 16 20 C -0.09 -1.12 5.14 -7.38 -0.04 -1.16 16 21 C -0.11 -1.83 6.33 32.94 0.21 -1.62 16 22 C -0.13 -3.13 5.61 32.94 0.18 -2.95 16 23 C -0.11 -1.62 6.26 33.35 0.21 -1.41 16 24 H 0.04 1.43 6.71 -2.38 -0.02 1.41 16 25 H 0.06 3.00 6.25 -2.39 -0.01 2.98 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 3.15 6.10 -2.39 -0.01 3.14 16 29 H 0.04 1.38 6.86 -2.38 -0.02 1.36 16 30 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 31 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.40 12.49 6.17 -92.71 -0.57 11.92 16 34 H 0.41 8.05 8.77 -92.71 -0.81 7.23 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.26 7.39 -2.39 -0.02 1.24 16 37 H 0.07 1.09 7.87 -2.39 -0.02 1.07 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.07 1.09 7.87 -2.39 -0.02 1.07 16 42 H 0.04 1.25 7.39 -2.39 -0.02 1.24 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -64.62 341.42 1.69 -62.94 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.41 Total: 24.61 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 4.60 Total: -6.78 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -4.48 Total: -97.67 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.06 Total: -28.26 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.62 1.69 -62.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838754276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.794 kcal (2) G-P(sol) polarization free energy of solvation -64.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds