Wall clock time and date at job start Tue Mar 31 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46978 * 2 1 4 4 H 1.08995 * 110.88494 * 308.80801 * 3 2 1 5 5 C 1.54631 * 110.96829 * 72.61823 * 3 2 1 6 6 C 1.51284 * 104.19385 * 142.91681 * 5 3 2 7 7 O 1.21280 * 124.94298 * 163.71989 * 6 5 3 8 8 N 1.34621 * 110.15232 * 343.76674 * 6 5 3 9 9 C 1.46498 * 124.47196 * 179.53197 * 8 6 5 10 10 N 1.46892 * 109.47505 * 270.02737 * 9 8 6 11 11 C 1.46846 * 111.00042 * 81.04405 * 10 9 8 12 12 C 1.53045 * 109.52543 * 174.16017 * 11 10 9 13 13 C 1.53112 * 109.27515 * 59.17900 * 12 11 10 14 14 C 1.53119 * 109.16437 * 302.34548 * 13 12 11 15 15 H 1.08992 * 109.50369 * 297.67728 * 14 13 12 16 16 C 1.50695 * 109.50399 * 177.59522 * 14 13 12 17 17 H 1.07999 * 120.00415 * 239.99840 * 16 14 13 18 18 C 1.37885 * 120.00048 * 60.00368 * 16 14 13 19 19 N 1.31514 * 119.99577 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99831 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47111 * 90.00167 * 20 18 16 22 22 H 1.48501 * 109.46671 * 209.99686 * 20 18 16 23 23 H 1.48496 * 109.47388 * 329.99874 * 20 18 16 24 24 C 1.46846 * 111.00310 * 316.83696 * 10 9 8 25 25 C 1.46768 * 111.17925 * 359.56068 * 8 6 5 26 26 H 1.08999 * 109.47639 * 300.00192 * 1 2 3 27 27 H 1.09007 * 109.47111 * 60.00289 * 1 2 3 28 28 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47639 * 239.99808 * 2 1 3 30 30 H 1.08998 * 109.47042 * 119.99397 * 2 1 3 31 31 H 1.09000 * 110.48694 * 261.59395 * 5 3 2 32 32 H 1.08995 * 110.48768 * 24.10659 * 5 3 2 33 33 H 1.09002 * 109.46674 * 30.03137 * 9 8 6 34 34 H 1.08998 * 109.46665 * 150.02301 * 9 8 6 35 35 H 1.08993 * 109.46527 * 294.17698 * 11 10 9 36 36 H 1.09002 * 109.46432 * 54.15575 * 11 10 9 37 37 H 1.08994 * 109.50152 * 179.12221 * 12 11 10 38 38 H 1.09002 * 109.49819 * 299.19979 * 12 11 10 39 39 H 1.09006 * 109.52536 * 62.25275 * 13 12 11 40 40 H 1.09004 * 109.52113 * 182.44196 * 13 12 11 41 41 H 0.96999 * 119.99484 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.45997 * 305.85487 * 24 10 9 43 43 H 1.08998 * 109.46404 * 65.81741 * 24 10 9 44 44 H 1.09002 * 110.24468 * 258.00978 * 25 8 6 45 45 H 1.09002 * 110.24463 * 136.09736 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5677 2.0216 -0.7935 5 6 1.8177 2.1080 1.3780 6 6 3.0422 2.9747 1.5732 7 8 3.1368 3.8707 2.3850 8 7 4.0117 2.6080 0.7142 9 6 5.3274 3.2463 0.6272 10 7 5.2729 4.3510 -0.3395 11 6 4.6995 5.5570 0.2714 12 6 4.7920 6.7234 -0.7151 13 6 4.0305 6.3652 -1.9943 14 6 4.6159 5.0791 -2.5842 15 1 5.6586 5.2446 -2.8547 16 6 3.8338 4.6870 -3.8112 17 1 3.3277 3.7336 -3.8472 18 6 3.7645 5.5454 -4.8881 19 7 4.3805 6.7065 -4.8440 20 14 2.7957 5.0589 -6.4093 21 1 1.3907 5.5187 -6.2693 22 1 3.4058 5.6897 -7.6072 23 1 2.8205 3.5819 -6.5607 24 6 4.5285 3.9605 -1.5435 25 6 3.5790 1.4848 -0.1256 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.9155 2.7196 1.3652 32 1 1.7541 1.3523 2.1608 33 1 5.6086 3.6339 1.6064 34 1 6.0656 2.5138 0.3007 35 1 3.6545 5.3754 0.5221 36 1 5.2529 5.8033 1.1776 37 1 4.3523 7.6145 -0.2673 38 1 5.8379 6.9150 -0.9551 39 1 2.9770 6.2120 -1.7602 40 1 4.1301 7.1755 -2.7165 41 1 4.3314 7.3105 -5.6015 42 1 4.9575 3.0470 -1.9554 43 1 3.4842 3.7863 -1.2843 44 1 4.0129 0.5532 0.2377 45 1 3.8683 1.6558 -1.1626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853523931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:58 Heat of formation + Delta-G solvation = -43.311744 kcal Electronic energy + Delta-G solvation = -23628.253748 eV Core-core repulsion = 20451.852973 eV Total energy + Delta-G solvation = -3176.400775 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59678 -37.87657 -36.75279 -34.63980 -33.15365 -31.58798 -29.91980 -29.55185 -27.63158 -25.59267 -24.92569 -23.29623 -22.01290 -21.26989 -20.55748 -19.41187 -18.54273 -16.68697 -16.58489 -16.08490 -15.39081 -14.92202 -14.59023 -14.36217 -14.12736 -14.01135 -13.54407 -13.23195 -13.12472 -12.91769 -12.63300 -12.48776 -12.24566 -12.20783 -11.75759 -11.67753 -11.30591 -11.11189 -10.95926 -10.88943 -10.81405 -10.66218 -10.57106 -10.06947 -9.82242 -9.66781 -9.47551 -9.17330 -8.70644 -8.64907 -8.30652 -7.79421 -5.97966 -4.04592 2.72659 3.20781 3.29015 3.36227 3.37888 4.33714 4.38654 4.40503 4.58973 4.62951 4.95031 5.11647 5.22185 5.27448 5.32016 5.37040 5.45188 5.57723 5.64691 5.71622 5.77677 5.81418 5.81824 5.90809 5.94346 6.05184 6.14344 6.19465 6.32540 6.40340 6.55165 6.63244 6.77366 6.80367 6.96218 7.16444 7.28315 7.39969 7.65707 7.72099 7.78122 8.07401 8.17398 8.33033 8.46826 8.99134 9.59573 11.07930 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.006259 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.583033 B = 4472.804809 C = 5830.707951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.094 0.906 5 C -0.150 4.150 6 C 0.516 3.484 7 O -0.536 6.536 8 N -0.632 5.632 9 C 0.281 3.719 10 N -0.538 5.538 11 C 0.065 3.935 12 C -0.118 4.118 13 C -0.109 4.109 14 C 0.054 3.946 15 H 0.033 0.967 16 C -0.514 4.514 17 H 0.052 0.948 18 C 0.063 3.937 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.072 3.928 25 C 0.098 3.902 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.031 0.969 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.059 0.941 39 H 0.027 0.973 40 H 0.090 0.910 41 H 0.260 0.740 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.068 0.932 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.458 -12.049 10.077 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.121 4.121 4 H 0.113 0.887 5 C -0.190 4.190 6 C 0.304 3.696 7 O -0.413 6.413 8 N -0.370 5.370 9 C 0.071 3.929 10 N -0.264 5.264 11 C -0.063 4.063 12 C -0.156 4.156 13 C -0.147 4.147 14 C 0.035 3.965 15 H 0.051 0.949 16 C -0.553 4.553 17 H 0.070 0.930 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.055 4.055 25 C -0.025 4.025 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.773 -11.249 10.246 15.467 hybrid contribution -1.345 -0.402 -0.687 1.563 sum -4.118 -11.651 9.560 15.623 Atomic orbital electron populations 1.21778 0.95451 1.01611 1.02244 1.21492 0.96262 0.94667 1.02397 1.22230 0.95070 0.97428 0.97342 0.88742 1.22441 0.98027 0.99989 0.98579 1.20993 0.85508 0.83232 0.79916 1.90701 1.82220 1.31309 1.37045 1.49389 1.16037 1.34504 1.37075 1.22486 0.82307 0.90973 0.97105 1.62586 1.53762 1.03725 1.06295 1.22046 0.97230 0.90698 0.96342 1.21696 1.01282 0.95415 0.97230 1.21637 0.96310 1.02381 0.94406 1.18687 0.97310 0.89658 0.90859 0.94904 1.21103 1.31857 1.02836 0.99455 0.92956 1.24935 0.95526 0.95029 0.98316 1.69894 1.43023 1.08778 1.30874 0.86649 0.80148 0.78625 0.82875 1.20820 1.21237 1.19970 1.22289 0.94203 0.99834 0.89159 1.22336 0.94266 0.89126 0.96781 0.92624 0.92353 0.92722 0.91197 0.91736 0.88495 0.88223 0.89726 0.89145 0.95118 0.92467 0.93581 0.92196 0.95371 0.89141 0.93047 0.92576 0.95575 0.91425 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.81 37.16 0.36 -0.83 16 2 C -0.11 -0.89 5.29 -26.73 -0.14 -1.03 16 3 C -0.10 -1.08 3.12 -88.98 -0.28 -1.36 16 4 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 5 C -0.15 -1.73 5.89 -26.74 -0.16 -1.89 16 6 C 0.52 8.09 7.33 -10.77 -0.08 8.01 16 7 O -0.54 -10.35 16.51 5.56 0.09 -10.26 16 8 N -0.63 -9.16 2.16 -175.85 -0.38 -9.54 16 9 C 0.28 4.31 6.19 -63.33 -0.39 3.92 16 10 N -0.54 -10.08 4.88 -238.58 -1.17 -11.25 16 11 C 0.06 1.26 5.07 -3.83 -0.02 1.24 16 12 C -0.12 -2.47 6.09 -26.65 -0.16 -2.63 16 13 C -0.11 -2.66 5.02 -26.61 -0.13 -2.79 16 14 C 0.05 1.33 2.26 -91.69 -0.21 1.13 16 15 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 16 C -0.51 -13.81 8.56 -34.44 -0.29 -14.10 16 17 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.26 11.35 55.43 0.63 -24.63 16 20 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.07 1.48 3.15 -3.83 -0.01 1.47 16 25 C 0.10 1.15 5.99 -3.12 -0.02 1.13 16 26 H 0.05 0.42 7.74 -51.93 -0.40 0.02 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 0.96 7.75 -51.93 -0.40 0.55 16 33 H 0.08 1.30 7.57 -51.93 -0.39 0.91 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.03 0.65 6.61 -51.93 -0.34 0.31 16 36 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.06 1.11 7.04 -51.93 -0.37 0.75 16 43 H 0.03 0.55 6.79 -51.93 -0.35 0.20 16 44 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 45 H 0.09 1.15 5.91 -51.93 -0.31 0.84 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -30.27 341.63 -10.21 -40.48 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.89 Total: 0.18 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.63 Total: -6.10 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.92 Total: -45.41 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.27 -10.21 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853523931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.836 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds