Wall clock time and date at job start Tue Mar 31 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46978 * 2 1 4 4 H 1.08995 * 110.88494 * 308.80801 * 3 2 1 5 5 C 1.54631 * 110.96829 * 72.61823 * 3 2 1 6 6 C 1.51284 * 104.19385 * 142.91681 * 5 3 2 7 7 O 1.21280 * 124.94298 * 163.71989 * 6 5 3 8 8 N 1.34621 * 110.15232 * 343.76674 * 6 5 3 9 9 C 1.46498 * 124.47196 * 179.53197 * 8 6 5 10 10 N 1.46892 * 109.47505 * 270.02737 * 9 8 6 11 11 C 1.46846 * 111.00042 * 81.04405 * 10 9 8 12 12 C 1.53045 * 109.52543 * 174.16017 * 11 10 9 13 13 C 1.53112 * 109.27515 * 59.17900 * 12 11 10 14 14 C 1.53119 * 109.16437 * 302.34548 * 13 12 11 15 15 H 1.08992 * 109.50369 * 297.67728 * 14 13 12 16 16 C 1.50695 * 109.50399 * 177.59522 * 14 13 12 17 17 H 1.07999 * 120.00415 * 239.99840 * 16 14 13 18 18 C 1.37885 * 120.00048 * 60.00368 * 16 14 13 19 19 N 1.31514 * 119.99577 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99831 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47111 * 90.00167 * 20 18 16 22 22 H 1.48501 * 109.46671 * 209.99686 * 20 18 16 23 23 H 1.48496 * 109.47388 * 329.99874 * 20 18 16 24 24 C 1.46846 * 111.00310 * 316.83696 * 10 9 8 25 25 C 1.46768 * 111.17925 * 359.56068 * 8 6 5 26 26 H 1.08999 * 109.47639 * 300.00192 * 1 2 3 27 27 H 1.09007 * 109.47111 * 60.00289 * 1 2 3 28 28 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47639 * 239.99808 * 2 1 3 30 30 H 1.08998 * 109.47042 * 119.99397 * 2 1 3 31 31 H 1.09000 * 110.48694 * 261.59395 * 5 3 2 32 32 H 1.08995 * 110.48768 * 24.10659 * 5 3 2 33 33 H 1.09002 * 109.46674 * 30.03137 * 9 8 6 34 34 H 1.08998 * 109.46665 * 150.02301 * 9 8 6 35 35 H 1.08993 * 109.46527 * 294.17698 * 11 10 9 36 36 H 1.09002 * 109.46432 * 54.15575 * 11 10 9 37 37 H 1.08994 * 109.50152 * 179.12221 * 12 11 10 38 38 H 1.09002 * 109.49819 * 299.19979 * 12 11 10 39 39 H 1.09006 * 109.52536 * 62.25275 * 13 12 11 40 40 H 1.09004 * 109.52113 * 182.44196 * 13 12 11 41 41 H 0.96999 * 119.99484 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.45997 * 305.85487 * 24 10 9 43 43 H 1.08998 * 109.46404 * 65.81741 * 24 10 9 44 44 H 1.09002 * 110.24468 * 258.00978 * 25 8 6 45 45 H 1.09002 * 110.24463 * 136.09736 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5677 2.0216 -0.7935 5 6 1.8177 2.1080 1.3780 6 6 3.0422 2.9747 1.5732 7 8 3.1368 3.8707 2.3850 8 7 4.0117 2.6080 0.7142 9 6 5.3274 3.2463 0.6272 10 7 5.2729 4.3510 -0.3395 11 6 4.6995 5.5570 0.2714 12 6 4.7920 6.7234 -0.7151 13 6 4.0305 6.3652 -1.9943 14 6 4.6159 5.0791 -2.5842 15 1 5.6586 5.2446 -2.8547 16 6 3.8338 4.6870 -3.8112 17 1 3.3277 3.7336 -3.8472 18 6 3.7645 5.5454 -4.8881 19 7 4.3805 6.7065 -4.8440 20 14 2.7957 5.0589 -6.4093 21 1 1.3907 5.5187 -6.2693 22 1 3.4058 5.6897 -7.6072 23 1 2.8205 3.5819 -6.5607 24 6 4.5285 3.9605 -1.5435 25 6 3.5790 1.4848 -0.1256 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.9155 2.7196 1.3652 32 1 1.7541 1.3523 2.1608 33 1 5.6086 3.6339 1.6064 34 1 6.0656 2.5138 0.3007 35 1 3.6545 5.3754 0.5221 36 1 5.2529 5.8033 1.1776 37 1 4.3523 7.6145 -0.2673 38 1 5.8379 6.9150 -0.9551 39 1 2.9770 6.2120 -1.7602 40 1 4.1301 7.1755 -2.7165 41 1 4.3314 7.3105 -5.6015 42 1 4.9575 3.0470 -1.9554 43 1 3.4842 3.7863 -1.2843 44 1 4.0129 0.5532 0.2377 45 1 3.8683 1.6558 -1.1626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853523931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:58 Heat of formation + Delta-G solvation = -60.909008 kcal Electronic energy + Delta-G solvation = -23629.016822 eV Core-core repulsion = 20451.852973 eV Total energy + Delta-G solvation = -3177.163849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77129 -39.46976 -37.87116 -36.06913 -34.72730 -33.10543 -31.75916 -30.66260 -28.63680 -27.01942 -26.82082 -24.16595 -23.62670 -23.00987 -21.39935 -20.74526 -20.19335 -18.50130 -17.77815 -17.44113 -16.80644 -16.47404 -15.98800 -15.73312 -15.39659 -15.22690 -14.90046 -14.44885 -14.37692 -14.23221 -14.18428 -14.03966 -13.73161 -13.28543 -13.05828 -12.89221 -12.83357 -12.57247 -12.45626 -12.39211 -11.87561 -11.85886 -11.76829 -11.68832 -11.51294 -11.46124 -10.99111 -10.82465 -10.68382 -10.39359 -9.93961 -9.31037 -8.07299 -6.21496 1.41803 1.42436 1.52266 1.53317 2.09351 2.43154 3.10451 3.20200 3.39663 3.49490 3.78409 4.02912 4.09381 4.17080 4.24204 4.38382 4.39645 4.51193 4.52720 4.60037 4.60248 4.64424 4.70253 4.74272 4.85733 4.89017 4.95149 4.97149 5.01430 5.12419 5.17591 5.24791 5.31771 5.37603 5.47039 5.51895 5.54518 5.62697 5.85835 6.02354 6.11063 6.18648 6.23499 6.43358 6.90767 7.13652 7.46470 8.97686 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.006259 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.583033 B = 4472.804809 C = 5830.707951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 C -0.094 4.094 4 H 0.074 0.926 5 C -0.141 4.141 6 C 0.503 3.497 7 O -0.580 6.580 8 N -0.633 5.633 9 C 0.280 3.720 10 N -0.546 5.546 11 C 0.076 3.924 12 C -0.112 4.112 13 C -0.101 4.101 14 C 0.051 3.949 15 H -0.002 1.002 16 C -0.530 4.530 17 H 0.056 0.944 18 C 0.013 3.987 19 N -0.918 5.918 20 Si 0.953 3.047 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.093 3.907 25 C 0.096 3.904 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.013 0.987 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.013 0.987 40 H 0.059 0.941 41 H 0.259 0.741 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.100 0.900 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 -14.531 10.576 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.140 4.140 3 C -0.113 4.113 4 H 0.093 0.907 5 C -0.181 4.181 6 C 0.292 3.708 7 O -0.460 6.460 8 N -0.370 5.370 9 C 0.071 3.929 10 N -0.271 5.271 11 C -0.052 4.052 12 C -0.150 4.150 13 C -0.139 4.139 14 C 0.032 3.968 15 H 0.016 0.984 16 C -0.568 4.568 17 H 0.075 0.925 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.779 3.221 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.187 1.187 24 C -0.034 4.034 25 C -0.026 4.026 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.031 0.969 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.118 0.882 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.286 -13.775 10.739 17.773 hybrid contribution -1.160 0.386 -0.834 1.480 sum -4.447 -13.389 9.904 17.237 Atomic orbital electron populations 1.21790 0.95303 1.02298 1.01814 1.21466 0.96299 0.92698 1.03581 1.22196 0.94218 0.98907 0.96009 0.90740 1.22451 0.95840 0.99865 0.99913 1.21718 0.86748 0.83001 0.79289 1.90670 1.83128 1.33269 1.38909 1.49431 1.15556 1.34907 1.37073 1.22542 0.83462 0.90643 0.96295 1.62547 1.53207 1.04757 1.06608 1.21893 0.96465 0.90540 0.96269 1.21609 1.00470 0.96858 0.96025 1.21448 0.95887 1.01274 0.95338 1.18625 0.94821 0.91420 0.91923 0.98376 1.21471 1.31944 1.03009 1.00425 0.92548 1.25741 0.96507 0.94976 1.01376 1.70044 1.44277 1.09745 1.31632 0.85631 0.78567 0.78870 0.79061 1.20510 1.21131 1.18655 1.21914 0.94195 0.98336 0.88965 1.22520 0.95137 0.89280 0.95690 0.92475 0.93452 0.91475 0.90549 0.89967 0.88623 0.85557 0.89643 0.86427 0.96894 0.90895 0.92124 0.92538 0.96764 0.92244 0.93161 0.91559 0.96196 0.88221 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.81 71.98 0.71 -1.30 16 2 C -0.10 -1.33 5.29 30.59 0.16 -1.16 16 3 C -0.09 -1.79 3.12 -9.73 -0.03 -1.82 16 4 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 5 C -0.14 -2.97 5.89 30.59 0.18 -2.79 16 6 C 0.50 15.18 7.33 87.87 0.64 15.82 16 7 O -0.58 -22.19 16.51 -3.03 -0.05 -22.24 16 8 N -0.63 -17.22 2.16 -828.74 -1.79 -19.01 16 9 C 0.28 8.09 6.19 170.81 1.06 9.14 16 10 N -0.55 -20.04 4.88 -908.74 -4.44 -24.48 16 11 C 0.08 2.96 5.07 86.33 0.44 3.40 16 12 C -0.11 -4.72 6.09 30.65 0.19 -4.53 16 13 C -0.10 -5.09 5.02 30.67 0.15 -4.93 16 14 C 0.05 2.59 2.26 -11.49 -0.03 2.57 16 15 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 16 C -0.53 -28.86 8.56 25.60 0.22 -28.64 16 17 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 18 C 0.01 0.70 5.30 84.66 0.45 1.15 16 19 N -0.92 -53.60 11.35 21.45 0.24 -53.36 16 20 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 24 C 0.09 3.82 3.15 86.33 0.27 4.09 16 25 C 0.10 2.01 5.99 86.83 0.52 2.53 16 26 H 0.06 0.72 7.74 -2.39 -0.02 0.70 16 27 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 0.82 7.93 -2.39 -0.02 0.80 16 31 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.13 2.00 7.75 -2.39 -0.02 1.98 16 33 H 0.09 2.49 7.57 -2.39 -0.02 2.47 16 34 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.01 0.55 6.61 -2.39 -0.02 0.53 16 36 H 0.07 2.61 7.92 -2.39 -0.02 2.59 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.06 3.35 6.15 -2.38 -0.01 3.33 16 41 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.07 2.57 7.04 -2.39 -0.02 2.55 16 43 H 0.02 0.84 6.79 -2.39 -0.02 0.82 16 44 H 0.10 1.50 7.89 -2.39 -0.02 1.48 16 45 H 0.07 1.80 5.91 -2.39 -0.01 1.79 16 Total: -1.00 -66.91 341.63 1.87 -65.04 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.94 Total: 15.33 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 4.93 Total: -6.49 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -5.99 Total: -96.85 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -66.91 1.87 -65.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853523931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.133 kcal (2) G-P(sol) polarization free energy of solvation -66.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds