Wall clock time and date at job start Tue Mar 31 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47023 * 2 1 4 4 H 1.08998 * 110.86247 * 302.66170 * 3 2 1 5 5 C 1.54633 * 110.96815 * 66.45854 * 3 2 1 6 6 C 1.51279 * 104.19854 * 93.31773 * 5 3 2 7 7 O 1.21282 * 124.94540 * 196.27189 * 6 5 3 8 8 N 1.34424 * 110.11516 * 16.25537 * 6 5 3 9 9 C 1.46495 * 124.34805 * 180.40804 * 8 6 5 10 10 N 1.46909 * 109.47142 * 90.02514 * 9 8 6 11 11 C 1.46846 * 111.00162 * 30.78435 * 10 9 8 12 12 C 1.53030 * 109.52377 * 185.84294 * 11 10 9 13 13 C 1.53123 * 109.28009 * 300.82027 * 12 11 10 14 14 C 1.53118 * 109.15585 * 57.65675 * 13 12 11 15 15 H 1.09000 * 109.50693 * 62.28496 * 14 13 12 16 16 C 1.50702 * 109.50203 * 182.40596 * 14 13 12 17 17 H 1.08001 * 120.00346 * 119.80365 * 16 14 13 18 18 C 1.37871 * 119.99901 * 299.80074 * 16 14 13 19 19 N 1.31515 * 120.00384 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 120.00092 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47030 * 60.00143 * 20 18 16 22 22 H 1.48500 * 109.47219 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47161 * 299.99827 * 20 18 16 24 24 C 1.46846 * 111.00243 * 154.99963 * 10 9 8 25 25 C 1.46770 * 111.30100 * 0.66891 * 8 6 5 26 26 H 1.09002 * 109.47137 * 299.99634 * 1 2 3 27 27 H 1.09004 * 109.47041 * 59.99746 * 1 2 3 28 28 H 1.08998 * 109.47248 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47137 * 240.00366 * 2 1 3 30 30 H 1.08996 * 109.47303 * 120.00159 * 2 1 3 31 31 H 1.08993 * 110.48244 * 334.63800 * 5 3 2 32 32 H 1.09004 * 110.48171 * 211.99392 * 5 3 2 33 33 H 1.08997 * 109.47497 * 330.02333 * 9 8 6 34 34 H 1.08996 * 109.47122 * 210.01636 * 9 8 6 35 35 H 1.08999 * 109.46373 * 305.86398 * 11 10 9 36 36 H 1.08998 * 109.45881 * 65.82485 * 11 10 9 37 37 H 1.09003 * 109.50272 * 180.88314 * 12 11 10 38 38 H 1.08997 * 109.53617 * 60.78297 * 12 11 10 39 39 H 1.08993 * 109.52379 * 297.75279 * 13 12 11 40 40 H 1.08996 * 109.52598 * 177.55713 * 13 12 11 41 41 H 0.96998 * 120.00420 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.45759 * 294.17597 * 24 10 9 43 43 H 1.09004 * 109.46280 * 54.13953 * 24 10 9 44 44 H 1.08992 * 110.24105 * 101.71842 * 25 8 6 45 45 H 1.08994 * 110.24181 * 223.72171 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6511 1.9917 -0.8575 5 6 1.6806 2.1564 1.3238 6 6 2.8978 1.9510 2.1983 7 8 2.9236 2.1075 3.4008 8 7 3.9465 1.5695 1.4489 9 6 5.2799 1.2775 1.9809 10 7 5.3665 -0.1467 2.3306 11 6 4.5117 -0.9570 1.4535 12 6 4.5135 -2.4090 1.9368 13 6 5.9476 -2.9455 1.9205 14 6 6.8270 -2.0556 2.8032 15 1 6.4691 -2.0961 3.8320 16 6 8.2523 -2.5417 2.7460 17 1 9.0317 -1.8880 2.3832 18 6 8.5613 -3.8210 3.1567 19 7 7.6123 -4.6174 3.5980 20 14 10.3280 -4.4239 3.0850 21 1 11.1816 -3.5576 3.9371 22 1 10.3939 -5.8231 3.5781 23 1 10.8127 -4.3706 1.6824 24 6 6.7582 -0.6138 2.2948 25 6 3.5856 1.4890 0.0286 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.8025 1.6978 1.7782 32 1 1.5106 3.2190 1.1501 33 1 5.4564 1.8815 2.8708 34 1 6.0312 1.5127 1.2271 35 1 3.4940 -0.5675 1.4774 36 1 4.8932 -0.9132 0.4334 37 1 3.8915 -3.0131 1.2763 38 1 4.1190 -2.4558 2.9518 39 1 6.3285 -2.9358 0.8993 40 1 5.9594 -3.9653 2.3050 41 1 7.8296 -5.5176 3.8866 42 1 7.1291 -0.5716 1.2707 43 1 7.3721 0.0250 2.9298 44 1 3.9491 2.3682 -0.5032 45 1 3.9974 0.5823 -0.4144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853523932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:02 Heat of formation + Delta-G solvation = -33.063346 kcal Electronic energy + Delta-G solvation = -23418.263542 eV Core-core repulsion = 20242.307171 eV Total energy + Delta-G solvation = -3175.956371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78015 -37.97778 -36.78641 -34.68146 -33.10998 -31.62242 -30.16397 -29.46552 -27.84062 -25.53271 -24.91433 -23.62598 -22.00861 -21.46540 -20.59132 -19.26177 -18.55501 -16.97022 -16.33888 -16.20632 -15.67821 -15.03285 -14.65733 -14.36215 -14.12272 -13.75352 -13.69241 -13.56084 -13.27494 -12.96803 -12.58620 -12.51637 -12.22805 -12.07417 -11.99604 -11.84605 -11.47515 -11.20067 -10.96384 -10.95586 -10.86624 -10.72423 -10.55219 -10.07882 -9.83612 -9.66161 -9.46283 -9.12099 -8.81393 -8.70794 -8.28418 -7.59547 -5.96092 -4.02716 2.67249 3.05245 3.32839 3.37787 3.39904 4.18053 4.24709 4.40406 4.47137 4.60291 4.77247 5.01700 5.17075 5.23113 5.26120 5.33870 5.34989 5.41580 5.46262 5.55721 5.68345 5.74703 5.77571 5.84895 5.85321 5.96782 6.05793 6.12807 6.28713 6.35733 6.44687 6.50084 6.71887 6.74651 6.94828 7.19412 7.22894 7.38574 7.67068 7.74086 7.78989 8.09094 8.17953 8.29754 8.48340 9.01047 9.61512 11.09908 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028828 B = 0.004258 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.046334 B = 6574.261532 C = 7007.969547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.098 4.098 4 H 0.096 0.904 5 C -0.154 4.154 6 C 0.520 3.480 7 O -0.524 6.524 8 N -0.617 5.617 9 C 0.294 3.706 10 N -0.550 5.550 11 C 0.062 3.938 12 C -0.118 4.118 13 C -0.109 4.109 14 C 0.056 3.944 15 H 0.035 0.965 16 C -0.516 4.516 17 H 0.053 0.947 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.070 3.930 25 C 0.098 3.902 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.018 0.982 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.029 0.971 40 H 0.090 0.910 41 H 0.260 0.740 42 H 0.020 0.980 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.546 11.394 -10.784 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.117 4.117 4 H 0.114 0.886 5 C -0.194 4.194 6 C 0.307 3.693 7 O -0.399 6.399 8 N -0.353 5.353 9 C 0.084 3.916 10 N -0.278 5.278 11 C -0.066 4.066 12 C -0.156 4.156 13 C -0.147 4.147 14 C 0.037 3.963 15 H 0.053 0.947 16 C -0.555 4.555 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.057 4.057 25 C -0.025 4.025 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.647 11.241 -9.557 19.433 hybrid contribution 1.389 -0.317 -0.986 1.733 sum -11.258 10.924 -10.544 18.901 Atomic orbital electron populations 1.21792 0.95393 1.01988 1.01753 1.21685 0.96265 0.94990 1.03234 1.22239 0.94156 0.97417 0.97885 0.88615 1.22492 0.98159 1.02868 0.95883 1.20818 0.85260 0.75726 0.87462 1.90739 1.84243 1.51407 1.13493 1.48380 1.11413 1.67570 1.07891 1.22063 0.80806 0.91185 0.97569 1.62378 1.11402 1.00806 1.53195 1.22196 0.96777 0.94719 0.92892 1.21692 0.99961 0.93523 1.00461 1.21641 0.91137 1.03347 0.98585 1.18646 0.94803 0.87073 0.95751 0.94684 1.21093 0.92965 0.98318 1.43100 0.92890 1.24927 0.96943 0.96825 0.95066 1.69884 1.31788 1.07708 1.43263 0.86687 0.85370 0.77783 0.78288 1.20287 1.21317 1.20417 1.22324 0.84871 1.00109 0.98372 1.22361 0.95223 1.02632 0.82332 0.92494 0.92711 0.92432 0.91138 0.90858 0.87870 0.88077 0.88952 0.93481 0.91411 0.96352 0.93696 0.92192 0.95255 0.89132 0.92991 0.96176 0.92075 0.91101 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.75 37.16 0.36 -0.75 16 2 C -0.12 -1.08 5.12 -26.73 -0.14 -1.21 16 3 C -0.10 -0.78 3.18 -88.89 -0.28 -1.06 16 4 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.15 -1.48 6.27 -26.74 -0.17 -1.64 16 6 C 0.52 7.63 7.73 -10.86 -0.08 7.54 16 7 O -0.52 -10.14 17.59 5.56 0.10 -10.04 16 8 N -0.62 -8.35 1.79 -175.79 -0.31 -8.66 16 9 C 0.29 4.66 6.37 -63.31 -0.40 4.26 16 10 N -0.55 -10.52 4.91 -238.58 -1.17 -11.69 16 11 C 0.06 1.09 4.12 -3.84 -0.02 1.07 16 12 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 13 C -0.11 -2.59 5.03 -26.61 -0.13 -2.73 16 14 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 15 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.52 -14.16 8.56 -34.44 -0.29 -14.45 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.50 11.36 55.43 0.63 -24.87 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.07 1.49 4.52 -3.84 -0.02 1.48 16 25 C 0.10 0.95 6.00 -3.02 -0.02 0.93 16 26 H 0.06 0.42 6.50 -51.93 -0.34 0.08 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.83 5.79 -51.93 -0.30 0.53 16 31 H 0.10 0.97 6.27 -51.93 -0.33 0.64 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.55 7.92 -51.93 -0.41 1.14 16 34 H 0.05 0.67 7.86 -51.93 -0.41 0.27 16 35 H 0.07 1.08 3.36 -51.93 -0.17 0.91 16 36 H 0.02 0.31 6.98 -51.93 -0.36 -0.05 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.85 5.97 -51.93 -0.31 0.54 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -31.38 337.35 -9.91 -41.30 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.56 Total: -1.18 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.66 Total: -6.21 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.86 Total: -45.22 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.10 Total: -10.04 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.38 -9.91 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853523932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.235 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds