Wall clock time and date at job start Tue Mar 31 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47023 * 2 1 4 4 H 1.08998 * 110.86247 * 302.66170 * 3 2 1 5 5 C 1.54633 * 110.96815 * 66.45854 * 3 2 1 6 6 C 1.51279 * 104.19854 * 93.31773 * 5 3 2 7 7 O 1.21282 * 124.94540 * 196.27189 * 6 5 3 8 8 N 1.34424 * 110.11516 * 16.25537 * 6 5 3 9 9 C 1.46495 * 124.34805 * 180.40804 * 8 6 5 10 10 N 1.46909 * 109.47142 * 90.02514 * 9 8 6 11 11 C 1.46846 * 111.00162 * 30.78435 * 10 9 8 12 12 C 1.53030 * 109.52377 * 185.84294 * 11 10 9 13 13 C 1.53123 * 109.28009 * 300.82027 * 12 11 10 14 14 C 1.53118 * 109.15585 * 57.65675 * 13 12 11 15 15 H 1.09000 * 109.50693 * 62.28496 * 14 13 12 16 16 C 1.50702 * 109.50203 * 182.40596 * 14 13 12 17 17 H 1.08001 * 120.00346 * 119.80365 * 16 14 13 18 18 C 1.37871 * 119.99901 * 299.80074 * 16 14 13 19 19 N 1.31515 * 120.00384 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 120.00092 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47030 * 60.00143 * 20 18 16 22 22 H 1.48500 * 109.47219 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47161 * 299.99827 * 20 18 16 24 24 C 1.46846 * 111.00243 * 154.99963 * 10 9 8 25 25 C 1.46770 * 111.30100 * 0.66891 * 8 6 5 26 26 H 1.09002 * 109.47137 * 299.99634 * 1 2 3 27 27 H 1.09004 * 109.47041 * 59.99746 * 1 2 3 28 28 H 1.08998 * 109.47248 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47137 * 240.00366 * 2 1 3 30 30 H 1.08996 * 109.47303 * 120.00159 * 2 1 3 31 31 H 1.08993 * 110.48244 * 334.63800 * 5 3 2 32 32 H 1.09004 * 110.48171 * 211.99392 * 5 3 2 33 33 H 1.08997 * 109.47497 * 330.02333 * 9 8 6 34 34 H 1.08996 * 109.47122 * 210.01636 * 9 8 6 35 35 H 1.08999 * 109.46373 * 305.86398 * 11 10 9 36 36 H 1.08998 * 109.45881 * 65.82485 * 11 10 9 37 37 H 1.09003 * 109.50272 * 180.88314 * 12 11 10 38 38 H 1.08997 * 109.53617 * 60.78297 * 12 11 10 39 39 H 1.08993 * 109.52379 * 297.75279 * 13 12 11 40 40 H 1.08996 * 109.52598 * 177.55713 * 13 12 11 41 41 H 0.96998 * 120.00420 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.45759 * 294.17597 * 24 10 9 43 43 H 1.09004 * 109.46280 * 54.13953 * 24 10 9 44 44 H 1.08992 * 110.24105 * 101.71842 * 25 8 6 45 45 H 1.08994 * 110.24181 * 223.72171 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6511 1.9917 -0.8575 5 6 1.6806 2.1564 1.3238 6 6 2.8978 1.9510 2.1983 7 8 2.9236 2.1075 3.4008 8 7 3.9465 1.5695 1.4489 9 6 5.2799 1.2775 1.9809 10 7 5.3665 -0.1467 2.3306 11 6 4.5117 -0.9570 1.4535 12 6 4.5135 -2.4090 1.9368 13 6 5.9476 -2.9455 1.9205 14 6 6.8270 -2.0556 2.8032 15 1 6.4691 -2.0961 3.8320 16 6 8.2523 -2.5417 2.7460 17 1 9.0317 -1.8880 2.3832 18 6 8.5613 -3.8210 3.1567 19 7 7.6123 -4.6174 3.5980 20 14 10.3280 -4.4239 3.0850 21 1 11.1816 -3.5576 3.9371 22 1 10.3939 -5.8231 3.5781 23 1 10.8127 -4.3706 1.6824 24 6 6.7582 -0.6138 2.2948 25 6 3.5856 1.4890 0.0286 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.8025 1.6978 1.7782 32 1 1.5106 3.2190 1.1501 33 1 5.4564 1.8815 2.8708 34 1 6.0312 1.5127 1.2271 35 1 3.4940 -0.5675 1.4774 36 1 4.8932 -0.9132 0.4334 37 1 3.8915 -3.0131 1.2763 38 1 4.1190 -2.4558 2.9518 39 1 6.3285 -2.9358 0.8993 40 1 5.9594 -3.9653 2.3050 41 1 7.8296 -5.5176 3.8866 42 1 7.1291 -0.5716 1.2707 43 1 7.3721 0.0250 2.9298 44 1 3.9491 2.3682 -0.5032 45 1 3.9974 0.5823 -0.4144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853523932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:01 Heat of formation + Delta-G solvation = -52.247834 kcal Electronic energy + Delta-G solvation = -23419.095444 eV Core-core repulsion = 20242.307171 eV Total energy + Delta-G solvation = -3176.788273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.82341 -39.55783 -37.85753 -36.05153 -34.68695 -33.14720 -31.78563 -30.66022 -28.69042 -26.96982 -26.76636 -24.35463 -23.64124 -23.12557 -21.38516 -20.53665 -20.16970 -18.53661 -17.79959 -17.41125 -16.73992 -16.60723 -16.05053 -15.57296 -15.33678 -15.14097 -14.92010 -14.69504 -14.63114 -14.31452 -14.25794 -13.80902 -13.43430 -13.15483 -13.07432 -12.93469 -12.82913 -12.71974 -12.59862 -12.54311 -11.99175 -11.85374 -11.75778 -11.54728 -11.50229 -11.36316 -10.90865 -10.78027 -10.69888 -10.38740 -9.98548 -9.05256 -8.08283 -6.23358 1.41714 1.43507 1.50926 1.56481 2.01186 2.42911 3.08440 3.18821 3.44085 3.47709 3.83531 4.00467 4.05056 4.14277 4.23756 4.32627 4.41612 4.43932 4.53201 4.56529 4.64666 4.66943 4.73166 4.78744 4.82078 4.87583 4.91419 4.92516 5.06069 5.13569 5.16157 5.24536 5.31932 5.40037 5.45583 5.49778 5.53797 5.62023 5.94421 6.09736 6.13852 6.19714 6.29099 6.43603 6.89168 7.18251 7.44943 8.96500 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028828 B = 0.004258 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.046334 B = 6574.261532 C = 7007.969547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.084 4.084 4 H 0.136 0.864 5 C -0.143 4.143 6 C 0.506 3.494 7 O -0.584 6.584 8 N -0.617 5.617 9 C 0.296 3.704 10 N -0.573 5.573 11 C 0.071 3.929 12 C -0.113 4.113 13 C -0.100 4.100 14 C 0.053 3.947 15 H -0.013 1.013 16 C -0.536 4.536 17 H 0.056 0.944 18 C 0.013 3.987 19 N -0.917 5.917 20 Si 0.957 3.043 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.268 1.268 24 C 0.086 3.914 25 C 0.091 3.909 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.056 0.944 41 H 0.260 0.740 42 H 0.029 0.971 43 H 0.057 0.943 44 H 0.100 0.900 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.208 12.791 -13.795 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.102 4.102 4 H 0.154 0.846 5 C -0.183 4.183 6 C 0.295 3.705 7 O -0.464 6.464 8 N -0.351 5.351 9 C 0.085 3.915 10 N -0.301 5.301 11 C -0.056 4.056 12 C -0.150 4.150 13 C -0.138 4.138 14 C 0.034 3.966 15 H 0.006 0.994 16 C -0.575 4.575 17 H 0.074 0.926 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.193 1.193 24 C -0.041 4.041 25 C -0.031 4.031 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.124 0.876 32 H 0.147 0.853 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.320 12.651 -12.620 22.287 hybrid contribution 1.567 -0.757 -0.025 1.741 sum -11.753 11.894 -12.645 20.964 Atomic orbital electron populations 1.21778 0.94388 1.01978 1.02606 1.21690 0.97182 0.95380 1.02067 1.22301 0.92686 0.97065 0.98191 0.84598 1.22528 0.95395 1.04879 0.95474 1.21811 0.86910 0.74535 0.87197 1.90702 1.85360 1.54006 1.16308 1.48525 1.10274 1.66580 1.09734 1.21874 0.83033 0.88699 0.97899 1.62229 1.10172 1.02921 1.54781 1.22150 0.97684 0.92680 0.93103 1.21610 0.97628 0.95875 0.99930 1.21424 0.93378 1.01289 0.97703 1.18572 0.94171 0.90247 0.93629 0.99447 1.21478 0.94109 0.98713 1.43187 0.92625 1.25752 1.01087 0.97028 0.94666 1.70048 1.33819 1.07889 1.43917 0.85637 0.80300 0.77132 0.78716 1.19765 1.21085 1.19298 1.21958 0.86466 0.97366 0.98342 1.22690 0.96627 1.03916 0.79819 0.92752 0.90689 0.93008 0.90178 0.94062 0.87643 0.85349 0.90732 0.91115 0.89487 0.94683 0.91073 0.94601 0.95163 0.92558 0.93092 0.95279 0.92484 0.88228 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.75 71.98 0.70 -1.04 16 2 C -0.13 -1.78 5.12 30.59 0.16 -1.62 16 3 C -0.08 -0.96 3.18 -9.67 -0.03 -0.99 16 4 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 5 C -0.14 -2.31 6.27 30.59 0.19 -2.11 16 6 C 0.51 14.31 7.73 87.90 0.68 14.99 16 7 O -0.58 -23.12 17.59 -3.04 -0.05 -23.18 16 8 N -0.62 -15.56 1.79 -828.67 -1.48 -17.04 16 9 C 0.30 9.15 6.37 170.80 1.09 10.24 16 10 N -0.57 -21.96 4.91 -908.73 -4.46 -26.42 16 11 C 0.07 2.43 4.12 86.32 0.36 2.79 16 12 C -0.11 -4.54 6.09 30.65 0.19 -4.35 16 13 C -0.10 -4.87 5.03 30.67 0.15 -4.72 16 14 C 0.05 2.77 2.26 -11.49 -0.03 2.74 16 15 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 16 C -0.54 -30.09 8.56 25.60 0.22 -29.87 16 17 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 18 C 0.01 0.75 5.30 84.65 0.45 1.20 16 19 N -0.92 -54.46 11.36 21.45 0.24 -54.22 16 20 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 C 0.09 3.71 4.52 86.33 0.39 4.10 16 25 C 0.09 1.40 6.00 86.90 0.52 1.93 16 26 H 0.05 0.66 6.50 -2.39 -0.02 0.64 16 27 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.85 5.79 -2.39 -0.01 0.84 16 31 H 0.11 1.71 6.27 -2.39 -0.01 1.70 16 32 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 2.56 7.92 -2.39 -0.02 2.54 16 34 H 0.07 1.87 7.86 -2.39 -0.02 1.85 16 35 H 0.09 2.68 3.36 -2.39 -0.01 2.67 16 36 H 0.04 1.10 6.98 -2.39 -0.02 1.08 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 3.13 6.16 -2.39 -0.01 3.11 16 41 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 2.45 8.12 -2.39 -0.02 2.43 16 44 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.33 5.97 -2.39 -0.01 1.31 16 Total: -1.00 -72.52 337.35 2.27 -70.25 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.96 Total: 11.26 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 5.04 Total: -6.73 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -5.70 Total: -97.68 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.52 2.27 -70.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853523932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.003 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds