Wall clock time and date at job start Tue Mar 31 2020 01:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 O 1.42896 * 109.47309 * 240.00157 * 2 1 3 5 5 C 1.53002 * 109.47443 * 119.99906 * 2 1 3 6 6 H 1.09002 * 109.50270 * 300.00083 * 5 2 1 7 7 C 1.53123 * 109.50117 * 60.07833 * 5 2 1 8 8 C 1.53115 * 109.15886 * 177.63301 * 7 5 2 9 9 C 1.53028 * 109.28362 * 302.34747 * 8 7 5 10 10 N 1.46847 * 109.52289 * 59.17763 * 9 8 7 11 11 C 1.46903 * 110.99939 * 174.16346 * 10 9 8 12 12 C 1.52998 * 109.47288 * 293.95269 * 11 10 9 13 13 H 1.09003 * 109.47040 * 55.00488 * 12 11 10 14 14 C 1.47200 * 109.47235 * 295.00312 * 12 11 10 15 15 N 6.77162 * 121.19355 * 93.01353 * 2 1 3 16 16 C 1.52997 * 109.47591 * 174.99863 * 12 11 10 17 17 C 1.50698 * 109.47628 * 184.99952 * 16 12 11 18 18 H 1.07998 * 119.99778 * 0.02562 * 17 16 12 19 19 C 1.37876 * 120.00222 * 179.97438 * 17 16 12 20 20 N 1.31514 * 119.99956 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00045 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46963 * 60.00222 * 21 19 17 23 23 H 1.48499 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47357 * 300.00135 * 21 19 17 25 25 C 1.46933 * 111.22239 * 298.25619 * 10 9 8 26 26 H 1.09002 * 109.46791 * 299.99463 * 1 2 3 27 27 H 1.08990 * 109.47495 * 59.99927 * 1 2 3 28 28 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47217 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47548 * 300.00269 * 3 2 1 31 31 H 1.09003 * 109.47116 * 60.00092 * 3 2 1 32 32 H 0.96700 * 114.00819 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.52349 * 297.54115 * 7 5 2 34 34 H 1.08997 * 109.52263 * 57.73077 * 7 5 2 35 35 H 1.09005 * 109.50370 * 62.28898 * 8 7 5 36 36 H 1.09005 * 109.50049 * 182.36328 * 8 7 5 37 37 H 1.09001 * 109.46921 * 179.19583 * 9 8 7 38 38 H 1.09004 * 109.46294 * 299.17346 * 9 8 7 39 39 H 1.08998 * 109.47475 * 53.95698 * 11 10 9 40 40 H 1.09003 * 109.47199 * 173.95672 * 11 10 9 41 41 H 1.09006 * 109.47072 * 305.00656 * 16 12 11 42 42 H 1.09011 * 109.46635 * 64.99927 * 16 12 11 43 43 H 0.96996 * 120.00070 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.45389 * 301.73952 * 25 10 9 45 45 H 1.09002 * 109.51493 * 181.73472 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0401 -0.7212 1.2492 6 1 1.6770 -0.2078 2.1396 7 6 1.5317 -2.1656 1.2490 8 6 2.0947 -2.8967 2.4709 9 6 3.6234 -2.8366 2.4357 10 7 4.0596 -1.4344 2.4380 11 6 5.5216 -1.3381 2.5442 12 6 5.9692 -1.8607 3.9108 13 1 5.5887 -2.8719 4.0555 14 6 5.4432 -0.9824 4.9684 15 7 5.0372 -0.3045 5.7846 16 6 7.4977 -1.8772 3.9749 17 6 7.9395 -2.5056 5.2714 18 1 7.2036 -2.8584 5.9788 19 6 9.2831 -2.6312 5.5541 20 7 10.1792 -2.2020 4.6925 21 14 9.8306 -3.4107 7.1609 22 1 9.3166 -4.8019 7.2365 23 1 11.3142 -3.4266 7.2232 24 1 9.2963 -2.6230 8.3007 25 6 3.5705 -0.7233 1.2489 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 2.9703 -0.7122 -1.2328 33 1 0.4426 -2.1684 1.2926 34 1 1.8621 -2.6679 0.3398 35 1 1.7325 -2.4175 3.3805 36 1 1.7702 -3.9372 2.4538 37 1 4.0271 -3.3440 3.3119 38 1 3.9855 -3.3280 1.5326 39 1 5.9832 -1.9352 1.7579 40 1 5.8260 -0.2971 2.4360 41 1 7.8903 -2.4556 3.1384 42 1 7.8747 -0.8559 3.9191 43 1 11.1245 -2.2900 4.8916 44 1 3.9327 -1.2248 0.3514 45 1 3.9351 0.3038 1.2632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879959830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:55 Heat of formation + Delta-G solvation = -48.204977 kcal Electronic energy + Delta-G solvation = -22655.893143 eV Core-core repulsion = 19479.280182 eV Total energy + Delta-G solvation = -3176.612961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.10664 -37.83354 -36.05967 -34.09828 -33.22969 -32.43317 -31.28341 -29.77494 -27.89691 -26.74813 -24.45521 -23.44615 -22.17562 -21.68463 -20.49734 -19.64511 -17.11992 -16.61764 -16.40474 -15.78110 -15.39358 -14.79426 -14.61453 -14.42761 -14.14798 -13.97823 -13.77562 -13.17826 -12.87593 -12.83975 -12.55458 -12.34795 -12.29731 -12.07190 -11.94843 -11.87641 -11.52246 -11.39289 -11.26047 -11.11394 -11.03455 -10.90392 -10.69493 -10.63597 -10.57468 -10.25157 -10.09524 -9.79894 -9.52513 -9.22763 -8.46301 -8.18971 -6.10484 -4.13737 3.30511 3.34820 3.38536 3.72164 3.82916 3.90729 4.03826 4.40468 4.48757 4.59479 4.71382 4.88337 4.91930 4.99356 5.10477 5.23726 5.27628 5.29874 5.38522 5.47154 5.52536 5.56428 5.59499 5.65227 5.68595 5.77902 5.79662 5.84071 5.87762 5.96302 6.02273 6.04352 6.07546 6.20672 6.36816 6.38457 6.50898 7.17535 7.20281 7.41130 7.47103 7.51544 7.84553 8.22249 8.59259 8.90754 9.51764 11.00409 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.003517 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.675924 B = 7959.554735 C = 8085.427556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.132 3.868 3 C -0.181 4.181 4 O -0.560 6.560 5 C -0.109 4.109 6 H 0.085 0.915 7 C -0.111 4.111 8 C -0.118 4.118 9 C 0.050 3.950 10 N -0.539 5.539 11 C 0.063 3.937 12 C 0.010 3.990 13 H 0.100 0.900 14 C 0.257 3.743 15 N -0.480 5.480 16 C 0.032 3.968 17 C -0.527 4.527 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.058 3.942 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.374 0.626 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.032 0.968 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.432 1.436 -12.431 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.091 3.909 3 C -0.239 4.239 4 O -0.367 6.367 5 C -0.128 4.128 6 H 0.103 0.897 7 C -0.148 4.148 8 C -0.155 4.155 9 C -0.078 4.078 10 N -0.263 5.263 11 C -0.066 4.066 12 C -0.012 4.012 13 H 0.118 0.882 14 C -0.060 4.060 15 N -0.157 5.157 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.070 4.070 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.222 0.778 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.692 2.638 -10.924 20.959 hybrid contribution 1.635 -0.956 0.079 1.896 sum -16.057 1.682 -10.845 19.449 Atomic orbital electron populations 1.21776 0.92809 1.02863 1.02174 1.21192 0.94700 0.90467 0.84532 1.22550 1.01903 0.96753 1.02681 1.86519 1.26687 1.79550 1.43961 1.21843 0.95343 0.97140 0.98494 0.89657 1.21582 1.00049 0.94733 0.98449 1.21596 0.95070 1.00106 0.98773 1.22181 0.95513 0.88840 1.01262 1.61943 1.11703 1.13665 1.38989 1.22222 0.85915 1.02022 0.96414 1.19254 1.00039 0.95307 0.86595 0.88235 1.28835 0.90812 0.93064 0.93273 1.80976 1.12039 1.11226 1.11482 1.19167 0.84557 0.98571 0.98381 1.21100 0.91905 1.40161 1.03331 0.92567 1.24946 0.96757 0.95372 0.96840 1.69925 1.01236 1.46473 1.35423 0.86654 0.77458 0.79953 0.84024 1.20044 1.21187 1.20204 1.22162 0.94564 0.98987 0.91305 0.91248 0.92145 0.91606 0.91914 0.92014 0.91452 0.77829 0.91930 0.91624 0.91315 0.91640 0.89976 0.94697 0.92881 0.90323 0.94503 0.95600 0.92734 0.94974 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.49 37.16 0.32 -0.83 16 2 C 0.13 1.17 0.84 -90.62 -0.08 1.09 16 3 C -0.18 -1.49 8.46 37.16 0.31 -1.18 16 4 O -0.56 -5.40 12.23 -35.23 -0.43 -5.83 16 5 C -0.11 -1.07 1.77 -90.54 -0.16 -1.23 16 6 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.11 -1.08 4.74 -26.61 -0.13 -1.20 16 8 C -0.12 -1.25 6.09 -26.66 -0.16 -1.41 16 9 C 0.05 0.60 5.30 -3.84 -0.02 0.58 16 10 N -0.54 -7.06 4.36 -234.60 -1.02 -8.08 16 11 C 0.06 0.92 4.32 -3.82 -0.02 0.90 16 12 C 0.01 0.18 2.14 -93.41 -0.20 -0.02 16 13 H 0.10 1.73 6.23 -51.93 -0.32 1.41 16 14 C 0.26 5.38 13.67 -20.76 -0.28 5.09 16 15 N -0.48 -10.93 18.54 42.15 0.78 -10.14 16 16 C 0.03 0.73 4.42 -27.89 -0.12 0.61 16 17 C -0.53 -13.99 8.60 -34.44 -0.30 -14.29 16 18 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 21 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.06 0.62 4.09 -3.79 -0.02 0.60 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.55 6.49 -51.93 -0.34 0.22 16 29 H 0.06 0.50 6.45 -51.93 -0.34 0.17 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.37 2.78 7.31 45.56 0.33 3.12 16 33 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 34 H 0.07 0.67 7.62 -51.93 -0.40 0.27 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.06 6.13 -51.93 -0.32 0.74 16 38 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.08 1.16 7.98 -51.93 -0.41 0.75 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.03 0.31 6.74 -51.93 -0.35 -0.03 16 45 H 0.08 0.81 6.35 -51.93 -0.33 0.48 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -30.27 350.98 -7.61 -37.88 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.99 Total: -1.00 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -0.95 Total: -9.65 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.50 Total: -42.94 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.43 Total: -5.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.27 -7.61 -37.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879959830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.324 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds