Wall clock time and date at job start Tue Mar 31 2020 01:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 O 1.42896 * 109.47309 * 240.00157 * 2 1 3 5 5 C 1.53002 * 109.47443 * 119.99906 * 2 1 3 6 6 H 1.09002 * 109.50270 * 300.00083 * 5 2 1 7 7 C 1.53123 * 109.50117 * 60.07833 * 5 2 1 8 8 C 1.53115 * 109.15886 * 177.63301 * 7 5 2 9 9 C 1.53028 * 109.28362 * 302.34747 * 8 7 5 10 10 N 1.46847 * 109.52289 * 59.17763 * 9 8 7 11 11 C 1.46903 * 110.99939 * 174.16346 * 10 9 8 12 12 C 1.52998 * 109.47288 * 293.95269 * 11 10 9 13 13 H 1.09003 * 109.47040 * 55.00488 * 12 11 10 14 14 C 1.47200 * 109.47235 * 295.00312 * 12 11 10 15 15 N 6.77162 * 121.19355 * 93.01353 * 2 1 3 16 16 C 1.52997 * 109.47591 * 174.99863 * 12 11 10 17 17 C 1.50698 * 109.47628 * 184.99952 * 16 12 11 18 18 H 1.07998 * 119.99778 * 0.02562 * 17 16 12 19 19 C 1.37876 * 120.00222 * 179.97438 * 17 16 12 20 20 N 1.31514 * 119.99956 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00045 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46963 * 60.00222 * 21 19 17 23 23 H 1.48499 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47357 * 300.00135 * 21 19 17 25 25 C 1.46933 * 111.22239 * 298.25619 * 10 9 8 26 26 H 1.09002 * 109.46791 * 299.99463 * 1 2 3 27 27 H 1.08990 * 109.47495 * 59.99927 * 1 2 3 28 28 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47217 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47548 * 300.00269 * 3 2 1 31 31 H 1.09003 * 109.47116 * 60.00092 * 3 2 1 32 32 H 0.96700 * 114.00819 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.52349 * 297.54115 * 7 5 2 34 34 H 1.08997 * 109.52263 * 57.73077 * 7 5 2 35 35 H 1.09005 * 109.50370 * 62.28898 * 8 7 5 36 36 H 1.09005 * 109.50049 * 182.36328 * 8 7 5 37 37 H 1.09001 * 109.46921 * 179.19583 * 9 8 7 38 38 H 1.09004 * 109.46294 * 299.17346 * 9 8 7 39 39 H 1.08998 * 109.47475 * 53.95698 * 11 10 9 40 40 H 1.09003 * 109.47199 * 173.95672 * 11 10 9 41 41 H 1.09006 * 109.47072 * 305.00656 * 16 12 11 42 42 H 1.09011 * 109.46635 * 64.99927 * 16 12 11 43 43 H 0.96996 * 120.00070 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.45389 * 301.73952 * 25 10 9 45 45 H 1.09002 * 109.51493 * 181.73472 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0401 -0.7212 1.2492 6 1 1.6770 -0.2078 2.1396 7 6 1.5317 -2.1656 1.2490 8 6 2.0947 -2.8967 2.4709 9 6 3.6234 -2.8366 2.4357 10 7 4.0596 -1.4344 2.4380 11 6 5.5216 -1.3381 2.5442 12 6 5.9692 -1.8607 3.9108 13 1 5.5887 -2.8719 4.0555 14 6 5.4432 -0.9824 4.9684 15 7 5.0372 -0.3045 5.7846 16 6 7.4977 -1.8772 3.9749 17 6 7.9395 -2.5056 5.2714 18 1 7.2036 -2.8584 5.9788 19 6 9.2831 -2.6312 5.5541 20 7 10.1792 -2.2020 4.6925 21 14 9.8306 -3.4107 7.1609 22 1 9.3166 -4.8019 7.2365 23 1 11.3142 -3.4266 7.2232 24 1 9.2963 -2.6230 8.3007 25 6 3.5705 -0.7233 1.2489 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 2.9703 -0.7122 -1.2328 33 1 0.4426 -2.1684 1.2926 34 1 1.8621 -2.6679 0.3398 35 1 1.7325 -2.4175 3.3805 36 1 1.7702 -3.9372 2.4538 37 1 4.0271 -3.3440 3.3119 38 1 3.9855 -3.3280 1.5326 39 1 5.9832 -1.9352 1.7579 40 1 5.8260 -0.2971 2.4360 41 1 7.8903 -2.4556 3.1384 42 1 7.8747 -0.8559 3.9191 43 1 11.1245 -2.2900 4.8916 44 1 3.9327 -1.2248 0.3514 45 1 3.9351 0.3038 1.2632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879959830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:54 Heat of formation + Delta-G solvation = -67.468222 kcal Electronic energy + Delta-G solvation = -22656.728460 eV Core-core repulsion = 19479.280182 eV Total energy + Delta-G solvation = -3177.448278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95162 -38.93637 -37.43875 -35.66311 -34.69085 -33.38683 -32.67925 -30.65753 -28.84633 -28.12874 -25.71519 -24.43578 -23.55721 -23.09646 -21.32467 -20.44944 -18.58353 -18.15699 -17.68898 -16.83488 -16.49042 -16.20829 -15.65398 -15.45591 -15.18713 -15.00031 -14.68999 -14.52135 -14.28028 -14.17448 -13.79876 -13.57511 -13.24457 -13.15895 -13.01247 -12.99078 -12.84484 -12.68314 -12.59772 -12.46636 -12.36701 -12.22691 -11.97424 -11.83736 -11.59202 -11.51087 -11.34954 -11.24442 -10.84494 -10.55687 -10.53130 -9.18589 -8.19631 -6.27949 1.40871 1.42706 1.49633 2.06448 2.14235 2.41326 2.89495 3.15779 3.34210 3.37923 3.73043 3.81922 3.96580 4.06668 4.17284 4.24188 4.27242 4.37473 4.49813 4.54246 4.61334 4.71654 4.76700 4.78671 4.83095 4.91273 4.92434 4.97854 5.01874 5.04005 5.09391 5.13364 5.24074 5.26241 5.31758 5.45916 5.47107 5.56624 5.61275 5.78749 6.10442 6.22797 6.24903 6.82725 6.86240 6.93325 7.40618 8.91081 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.003517 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.675924 B = 7959.554735 C = 8085.427556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.136 3.864 3 C -0.180 4.180 4 O -0.571 6.571 5 C -0.103 4.103 6 H 0.073 0.927 7 C -0.106 4.106 8 C -0.114 4.114 9 C 0.047 3.953 10 N -0.551 5.551 11 C 0.073 3.927 12 C 0.021 3.979 13 H 0.114 0.886 14 C 0.267 3.733 15 N -0.514 5.514 16 C 0.039 3.961 17 C -0.541 4.541 18 H 0.053 0.947 19 C 0.013 3.987 20 N -0.923 5.923 21 Si 0.947 3.053 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.058 3.942 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.382 0.618 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.001 0.999 43 H 0.264 0.736 44 H 0.046 0.954 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.338 0.771 -13.146 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.095 3.905 3 C -0.237 4.237 4 O -0.379 6.379 5 C -0.122 4.122 6 H 0.091 0.909 7 C -0.143 4.143 8 C -0.152 4.152 9 C -0.080 4.080 10 N -0.276 5.276 11 C -0.056 4.056 12 C -0.001 4.001 13 H 0.132 0.868 14 C -0.049 4.049 15 N -0.192 5.192 16 C 0.000 4.000 17 C -0.579 4.579 18 H 0.071 0.929 19 C -0.186 4.186 20 N -0.563 5.563 21 Si 0.773 3.227 22 H -0.187 1.187 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.070 4.070 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.232 0.768 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.609 1.966 -11.646 22.041 hybrid contribution 1.900 -0.742 0.287 2.060 sum -16.709 1.224 -11.359 20.242 Atomic orbital electron populations 1.21805 0.92375 1.02926 1.02664 1.21168 0.95037 0.90512 0.83814 1.22533 1.01991 0.96392 1.02826 1.86507 1.27632 1.79654 1.44106 1.21775 0.94631 0.97282 0.98508 0.90902 1.21541 1.00487 0.94397 0.97870 1.21569 0.94039 1.00979 0.98572 1.22229 0.96437 0.88180 1.01193 1.61888 1.10410 1.14623 1.40682 1.22035 0.87373 1.01957 0.94213 1.19205 0.96905 0.95932 0.88071 0.86800 1.29316 0.90056 0.92548 0.92963 1.80973 1.13150 1.12469 1.12603 1.18983 0.87606 0.96567 0.96833 1.21517 0.92015 1.39790 1.04540 0.92889 1.25696 0.97116 0.96064 0.99761 1.70018 1.01467 1.47734 1.37043 0.85767 0.77203 0.79568 0.80164 1.18726 1.20687 1.20712 1.22214 0.95112 0.98825 0.90819 0.90486 0.91994 0.91749 0.91776 0.91704 0.91471 0.76838 0.91153 0.91616 0.92659 0.90276 0.91048 0.93736 0.91341 0.90503 0.94693 0.98017 0.92680 0.93544 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.49 71.98 0.61 -1.46 16 2 C 0.14 2.16 0.84 -10.79 -0.01 2.15 16 3 C -0.18 -2.67 8.46 71.98 0.61 -2.06 16 4 O -0.57 -9.80 12.23 -148.98 -1.82 -11.62 16 5 C -0.10 -1.84 1.77 -10.74 -0.02 -1.86 16 6 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 7 C -0.11 -1.84 4.74 30.67 0.15 -1.70 16 8 C -0.11 -2.22 6.09 30.64 0.19 -2.03 16 9 C 0.05 1.05 5.30 86.32 0.46 1.51 16 10 N -0.55 -13.60 4.36 -896.13 -3.90 -17.50 16 11 C 0.07 2.04 4.32 86.30 0.37 2.41 16 12 C 0.02 0.74 2.14 -12.60 -0.03 0.71 16 13 H 0.11 3.81 6.23 -2.39 -0.01 3.80 16 14 C 0.27 11.09 13.67 89.44 1.22 12.32 16 15 N -0.51 -23.36 18.54 20.01 0.37 -22.99 16 16 C 0.04 1.79 4.42 29.85 0.13 1.92 16 17 C -0.54 -28.63 8.60 25.60 0.22 -28.41 16 18 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 19 C 0.01 0.70 5.46 84.65 0.46 1.16 16 20 N -0.92 -52.81 13.29 21.45 0.28 -52.52 16 21 Si 0.95 43.33 29.54 68.60 2.03 45.36 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.06 1.13 4.09 86.31 0.35 1.48 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.96 6.49 -2.39 -0.02 0.95 16 29 H 0.06 0.92 6.45 -2.38 -0.02 0.91 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.38 4.84 7.31 -74.06 -0.54 4.30 16 33 H 0.07 1.13 6.57 -2.39 -0.02 1.12 16 34 H 0.07 1.18 7.62 -2.39 -0.02 1.16 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.07 1.73 6.13 -2.39 -0.01 1.72 16 38 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.07 1.72 8.12 -2.39 -0.02 1.70 16 40 H 0.08 2.18 7.98 -2.39 -0.02 2.16 16 41 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 43 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.05 0.79 6.74 -2.39 -0.02 0.77 16 45 H 0.08 1.49 6.35 -2.39 -0.02 1.48 16 Total: -1.00 -63.37 350.98 2.10 -61.27 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.43 Total: 11.88 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.72 Total: -13.87 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -3.25 Total: -93.02 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -1.82 Total: -11.62 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -63.37 2.10 -61.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879959830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.199 kcal (2) G-P(sol) polarization free energy of solvation -63.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds