Wall clock time and date at job start Tue Mar 31 2020 02:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46835 * 2 1 4 4 C 1.50694 * 109.47204 * 240.00098 * 2 1 3 5 5 H 1.08001 * 120.00108 * 240.00304 * 4 2 1 6 6 C 1.37885 * 120.00118 * 59.99643 * 4 2 1 7 7 N 1.31513 * 119.99758 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99958 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47372 * 90.00172 * 8 6 4 10 10 H 1.48495 * 109.46786 * 210.00273 * 8 6 4 11 11 H 1.48497 * 109.46953 * 329.99949 * 8 6 4 12 12 C 1.52998 * 109.47117 * 119.99864 * 2 1 3 13 13 N 1.46503 * 109.47306 * 300.00198 * 12 2 1 14 14 C 1.34771 * 119.99993 * 180.02562 * 13 12 2 15 15 O 1.21592 * 120.00049 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99741 * 179.97438 * 14 13 12 17 17 C 1.46508 * 120.00030 * 179.97438 * 16 14 13 18 18 C 1.51872 * 108.55759 * 80.94795 * 17 16 14 19 19 C 1.53029 * 110.76080 * 187.50962 * 18 17 16 20 20 C 1.51376 * 108.61350 * 274.28983 * 19 18 17 21 21 C 1.29521 * 120.35897 * 71.92013 * 20 19 18 22 22 C 1.51368 * 120.36592 * 359.97438 * 21 20 19 23 23 C 1.51846 * 108.65224 * 205.00228 * 17 16 14 24 24 H 1.09000 * 109.47459 * 299.99999 * 1 2 3 25 25 H 1.09000 * 109.47056 * 60.00210 * 1 2 3 26 26 H 1.08995 * 109.47117 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47111 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47127 * 299.99747 * 3 2 1 29 29 H 1.09000 * 109.47097 * 59.99779 * 3 2 1 30 30 H 0.97002 * 119.99384 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46890 * 180.02562 * 12 2 1 32 32 H 1.08995 * 109.47020 * 60.00071 * 12 2 1 33 33 H 0.96998 * 119.99474 * 359.97438 * 13 12 2 34 34 H 0.96995 * 120.00568 * 0.02562 * 16 14 13 35 35 H 1.09003 * 108.60300 * 323.01967 * 17 16 14 36 36 H 1.09002 * 109.19818 * 67.18585 * 18 17 16 37 37 H 1.09003 * 109.23746 * 307.85451 * 18 17 16 38 38 H 1.08996 * 109.61401 * 154.54781 * 19 18 17 39 39 H 1.09007 * 109.61034 * 34.02360 * 19 18 17 40 40 H 1.07998 * 119.81373 * 251.89593 * 20 19 18 41 41 H 1.08006 * 119.81476 * 179.97438 * 21 20 19 42 42 H 1.09005 * 109.61186 * 47.83692 * 22 21 20 43 43 H 1.09003 * 109.61765 * 168.18474 * 22 21 20 44 44 H 1.09007 * 109.22116 * 52.20474 * 23 17 16 45 45 H 1.08998 * 109.21839 * 292.86391 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5767 -1.4794 3.7810 16 7 1.4288 0.1449 4.7699 17 6 1.7827 -0.3556 6.1006 18 6 3.1794 0.1317 6.4445 19 6 3.6745 -0.5123 7.7414 20 6 3.1766 0.3107 8.9103 21 6 1.9237 0.2916 9.2378 22 6 0.9411 -0.5534 8.4557 23 6 0.7201 0.0949 7.0873 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.7088 1.1613 -3.4844 31 1 3.1300 -0.7208 1.2494 32 1 1.6767 -1.7488 1.2492 33 1 0.9943 0.7582 2.3564 34 1 0.8708 0.9333 4.6810 35 1 1.7917 -1.4452 6.0712 36 1 3.1614 1.2148 6.5657 37 1 3.8599 -0.1266 5.6331 38 1 4.7643 -0.5335 7.7466 39 1 3.2859 -1.5279 7.8172 40 1 3.8701 0.9168 9.4743 41 1 1.5780 0.8819 10.0737 42 1 1.3455 -1.5571 8.3240 43 1 -0.0048 -0.6080 8.9947 44 1 -0.2627 -0.1884 6.7105 45 1 0.7645 1.1789 7.1924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884408724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:34 Heat of formation + Delta-G solvation = -34.147883 kcal Electronic energy + Delta-G solvation = -22401.593424 eV Core-core repulsion = 19225.590024 eV Total energy + Delta-G solvation = -3176.003400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.99815 -38.42559 -36.38501 -34.44747 -33.22034 -32.00838 -31.20268 -30.11023 -25.76208 -25.69699 -25.21528 -24.19565 -24.11289 -20.77676 -20.44843 -18.74359 -18.27874 -17.93524 -16.69922 -15.92796 -15.72624 -14.97168 -14.77234 -14.57984 -14.08342 -13.79830 -13.65800 -13.15928 -13.06400 -12.85268 -12.73095 -12.36831 -12.14289 -11.89332 -11.41770 -11.37885 -11.17334 -10.98949 -10.82768 -10.75247 -10.66923 -10.48668 -10.35270 -10.18654 -9.74372 -9.60078 -9.31580 -9.21055 -8.89996 -8.76406 -8.39101 -8.14338 -6.00173 -4.09923 2.09963 3.13785 3.29830 3.36711 3.41378 3.70366 4.40388 4.42856 4.66578 4.73516 4.85155 4.97443 5.00299 5.17444 5.26648 5.27839 5.35307 5.54384 5.61282 5.67272 5.78314 5.96075 6.00591 6.13139 6.22780 6.28527 6.40299 6.47959 6.54028 6.71369 6.76752 6.83784 6.85706 6.94772 7.06207 7.14736 7.35626 7.47006 7.58661 7.72100 8.03843 8.15277 8.41148 8.55015 8.90206 9.11360 9.55737 11.01274 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.043799 B = 0.003089 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.137764 B = 9061.967335 C = 9265.922386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.151 3.849 13 N -0.734 5.734 14 C 0.697 3.303 15 O -0.600 6.600 16 N -0.754 5.754 17 C 0.168 3.832 18 C -0.123 4.123 19 C -0.090 4.090 20 C -0.153 4.153 21 C -0.163 4.163 22 C -0.087 4.087 23 C -0.120 4.120 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.393 0.607 34 H 0.392 0.608 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 2.296 20.243 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.028 3.972 13 N -0.388 5.388 14 C 0.397 3.603 15 O -0.479 6.479 16 N -0.409 5.409 17 C 0.062 3.938 18 C -0.162 4.162 19 C -0.128 4.128 20 C -0.171 4.171 21 C -0.181 4.181 22 C -0.125 4.125 23 C -0.158 4.158 24 H 0.024 0.976 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.225 0.775 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.358 1.475 20.132 20.189 hybrid contribution -0.179 0.435 -0.889 1.006 sum -0.537 1.910 19.243 19.345 Atomic orbital electron populations 1.21817 0.97816 0.99127 0.99967 1.18356 0.92761 0.92761 0.90582 1.21815 0.98555 0.98381 0.99964 1.21003 1.31396 1.12064 0.89903 0.92414 1.24882 0.94901 0.94917 0.98838 1.69809 1.36802 1.22759 1.23164 0.86571 0.79343 0.79379 0.82588 1.20728 1.21296 1.19886 1.21560 0.97812 0.95382 0.82468 1.45518 1.55654 1.33003 1.04666 1.16100 0.80515 0.82974 0.80708 1.90873 1.43099 1.27825 1.86094 1.45350 1.57399 1.33286 1.04902 1.20419 0.93138 0.99724 0.80501 1.21704 0.96911 1.00437 0.97124 1.20768 1.00705 0.98750 0.92540 1.22619 0.96570 0.99897 0.98001 1.22523 0.95109 1.00562 0.99939 1.20720 0.98636 0.98745 0.94413 1.21552 0.98704 1.01294 0.94285 0.97565 0.89679 0.95485 0.95483 0.89682 0.97562 0.93053 0.93047 0.93041 0.77275 0.77547 0.90180 0.91998 0.90716 0.91330 0.90827 0.87666 0.87647 0.90727 0.91134 0.90983 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.37 8.01 -34.44 -0.28 -13.64 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.75 9.35 55.43 0.52 -23.23 16 8 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.15 3.29 4.50 -4.04 -0.02 3.27 16 13 N -0.73 -13.39 4.96 -65.23 -0.32 -13.71 16 14 C 0.70 12.53 8.32 -86.93 -0.72 11.81 16 15 O -0.60 -13.06 15.66 5.28 0.08 -12.98 16 16 N -0.75 -9.98 5.03 -59.81 -0.30 -10.28 16 17 C 0.17 1.96 1.97 -69.09 -0.14 1.83 16 18 C -0.12 -1.42 5.14 -27.29 -0.14 -1.56 16 19 C -0.09 -0.87 5.62 -27.54 -0.15 -1.03 16 20 C -0.15 -1.30 9.34 -35.28 -0.33 -1.63 16 21 C -0.16 -1.29 9.34 -35.29 -0.33 -1.62 16 22 C -0.09 -0.69 5.62 -27.54 -0.15 -0.84 16 23 C -0.12 -1.06 5.06 -27.30 -0.14 -1.19 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 25 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.39 6.43 6.18 -40.82 -0.25 6.17 16 34 H 0.39 4.18 8.58 -40.82 -0.35 3.83 16 35 H 0.08 1.11 7.34 -51.93 -0.38 0.73 16 36 H 0.06 0.68 7.86 -51.93 -0.41 0.27 16 37 H 0.07 1.08 7.62 -51.93 -0.40 0.68 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.73 6.68 -51.93 -0.35 0.38 16 40 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.11 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.07 0.63 6.68 -51.93 -0.35 0.28 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 45 H 0.07 0.57 7.86 -51.93 -0.41 0.16 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -29.08 344.43 -9.40 -38.49 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -7.58 Total: 7.71 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.97 Total: -7.02 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.11 Total: -47.22 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.08 -9.40 -38.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.340 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds