Wall clock time and date at job start Tue Mar 31 2020 02:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46835 * 2 1 4 4 C 1.50694 * 109.47204 * 240.00098 * 2 1 3 5 5 H 1.08001 * 120.00108 * 240.00304 * 4 2 1 6 6 C 1.37885 * 120.00118 * 59.99643 * 4 2 1 7 7 N 1.31513 * 119.99758 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99958 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47372 * 90.00172 * 8 6 4 10 10 H 1.48495 * 109.46786 * 210.00273 * 8 6 4 11 11 H 1.48497 * 109.46953 * 329.99949 * 8 6 4 12 12 C 1.52998 * 109.47117 * 119.99864 * 2 1 3 13 13 N 1.46503 * 109.47306 * 300.00198 * 12 2 1 14 14 C 1.34771 * 119.99993 * 180.02562 * 13 12 2 15 15 O 1.21592 * 120.00049 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99741 * 179.97438 * 14 13 12 17 17 C 1.46508 * 120.00030 * 179.97438 * 16 14 13 18 18 C 1.51872 * 108.55759 * 80.94795 * 17 16 14 19 19 C 1.53029 * 110.76080 * 187.50962 * 18 17 16 20 20 C 1.51376 * 108.61350 * 274.28983 * 19 18 17 21 21 C 1.29521 * 120.35897 * 71.92013 * 20 19 18 22 22 C 1.51368 * 120.36592 * 359.97438 * 21 20 19 23 23 C 1.51846 * 108.65224 * 205.00228 * 17 16 14 24 24 H 1.09000 * 109.47459 * 299.99999 * 1 2 3 25 25 H 1.09000 * 109.47056 * 60.00210 * 1 2 3 26 26 H 1.08995 * 109.47117 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47111 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47127 * 299.99747 * 3 2 1 29 29 H 1.09000 * 109.47097 * 59.99779 * 3 2 1 30 30 H 0.97002 * 119.99384 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46890 * 180.02562 * 12 2 1 32 32 H 1.08995 * 109.47020 * 60.00071 * 12 2 1 33 33 H 0.96998 * 119.99474 * 359.97438 * 13 12 2 34 34 H 0.96995 * 120.00568 * 0.02562 * 16 14 13 35 35 H 1.09003 * 108.60300 * 323.01967 * 17 16 14 36 36 H 1.09002 * 109.19818 * 67.18585 * 18 17 16 37 37 H 1.09003 * 109.23746 * 307.85451 * 18 17 16 38 38 H 1.08996 * 109.61401 * 154.54781 * 19 18 17 39 39 H 1.09007 * 109.61034 * 34.02360 * 19 18 17 40 40 H 1.07998 * 119.81373 * 251.89593 * 20 19 18 41 41 H 1.08006 * 119.81476 * 179.97438 * 21 20 19 42 42 H 1.09005 * 109.61186 * 47.83692 * 22 21 20 43 43 H 1.09003 * 109.61765 * 168.18474 * 22 21 20 44 44 H 1.09007 * 109.22116 * 52.20474 * 23 17 16 45 45 H 1.08998 * 109.21839 * 292.86391 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5767 -1.4794 3.7810 16 7 1.4288 0.1449 4.7699 17 6 1.7827 -0.3556 6.1006 18 6 3.1794 0.1317 6.4445 19 6 3.6745 -0.5123 7.7414 20 6 3.1766 0.3107 8.9103 21 6 1.9237 0.2916 9.2378 22 6 0.9411 -0.5534 8.4557 23 6 0.7201 0.0949 7.0873 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.7088 1.1613 -3.4844 31 1 3.1300 -0.7208 1.2494 32 1 1.6767 -1.7488 1.2492 33 1 0.9943 0.7582 2.3564 34 1 0.8708 0.9333 4.6810 35 1 1.7917 -1.4452 6.0712 36 1 3.1614 1.2148 6.5657 37 1 3.8599 -0.1266 5.6331 38 1 4.7643 -0.5335 7.7466 39 1 3.2859 -1.5279 7.8172 40 1 3.8701 0.9168 9.4743 41 1 1.5780 0.8819 10.0737 42 1 1.3455 -1.5571 8.3240 43 1 -0.0048 -0.6080 8.9947 44 1 -0.2627 -0.1884 6.7105 45 1 0.7645 1.1789 7.1924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:33 Heat of formation + Delta-G solvation = -51.077026 kcal Electronic energy + Delta-G solvation = -22402.327527 eV Core-core repulsion = 19225.590024 eV Total energy + Delta-G solvation = -3176.737503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28298 -39.49404 -38.08807 -35.57354 -34.96568 -32.85714 -32.75728 -31.33082 -27.55335 -27.47189 -26.85162 -25.35703 -24.95359 -22.02759 -21.57287 -20.56852 -19.49036 -18.79836 -17.76625 -17.68424 -16.85831 -16.61649 -16.40080 -15.74501 -15.32686 -15.08465 -14.90803 -14.68039 -14.30813 -14.04723 -13.89888 -13.87448 -13.20958 -13.19412 -13.09086 -12.70359 -12.63944 -12.58960 -12.24873 -12.13217 -12.10577 -11.85658 -11.57629 -11.47308 -11.35274 -11.20544 -11.11514 -10.69817 -10.39869 -10.25095 -9.92523 -9.62925 -8.01952 -6.17509 1.42902 1.45552 1.46904 1.53944 1.83766 2.24687 2.46776 3.21658 3.42639 3.65601 3.92075 4.10103 4.19066 4.27201 4.40610 4.44486 4.50799 4.54513 4.60293 4.68285 4.73053 4.86846 4.93114 5.00290 5.07043 5.09148 5.11270 5.19351 5.21092 5.24773 5.29122 5.37774 5.41031 5.63437 5.66470 5.67879 5.68225 5.83999 6.08451 6.13388 6.16186 6.23012 6.44632 6.86815 7.21141 7.50209 7.68583 8.97049 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.043799 B = 0.003089 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.137764 B = 9061.967335 C = 9265.922386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.053 3.947 3 C -0.119 4.119 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.169 3.831 13 N -0.727 5.727 14 C 0.695 3.305 15 O -0.641 6.641 16 N -0.734 5.734 17 C 0.167 3.833 18 C -0.118 4.118 19 C -0.088 4.088 20 C -0.163 4.163 21 C -0.156 4.156 22 C -0.089 4.089 23 C -0.111 4.111 24 H 0.037 0.963 25 H 0.062 0.938 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.405 0.595 34 H 0.409 0.591 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 3.439 22.003 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.201 1.201 12 C 0.044 3.956 13 N -0.382 5.382 14 C 0.395 3.605 15 O -0.523 6.523 16 N -0.390 5.390 17 C 0.062 3.938 18 C -0.156 4.156 19 C -0.126 4.126 20 C -0.181 4.181 21 C -0.174 4.174 22 C -0.127 4.127 23 C -0.149 4.149 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.241 0.759 34 H 0.244 0.756 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.389 2.664 21.927 22.132 hybrid contribution 0.132 0.067 -1.387 1.395 sum -1.257 2.731 20.540 20.759 Atomic orbital electron populations 1.21656 0.97064 0.98613 1.00365 1.18346 0.93280 0.93014 0.90158 1.21655 0.97830 0.97851 1.00347 1.21289 1.31753 1.12184 0.91641 0.93802 1.25448 0.95146 0.95583 1.00934 1.69908 1.37028 1.23241 1.23602 0.85759 0.78661 0.78510 0.79887 1.20459 1.20748 1.20128 1.21091 0.96525 0.94626 0.83355 1.45212 1.55896 1.33192 1.03943 1.16242 0.80186 0.82685 0.81366 1.90850 1.44936 1.29834 1.86695 1.45225 1.56431 1.33125 1.04191 1.20590 0.94469 0.98420 0.80284 1.21620 0.96002 1.01079 0.96935 1.20714 1.00828 0.98670 0.92377 1.22623 0.97252 1.00360 0.97816 1.22713 0.94728 0.99993 0.99994 1.20760 0.99670 0.98226 0.94023 1.21498 0.97593 1.02085 0.93747 0.94432 0.91875 0.96405 0.96462 0.91871 0.94461 0.93014 0.94915 0.94809 0.75862 0.75552 0.92627 0.91034 0.94221 0.91213 0.91417 0.86448 0.85800 0.91595 0.89194 0.90230 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 2 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 3 C -0.12 -5.34 8.08 71.98 0.58 -4.75 16 4 C -0.53 -28.45 8.01 25.60 0.21 -28.25 16 5 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 6 C 0.03 1.52 5.15 84.66 0.44 1.96 16 7 N -0.90 -48.14 9.35 21.45 0.20 -47.94 16 8 Si 0.95 42.95 29.54 68.60 2.03 44.97 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.17 7.42 4.50 86.38 0.39 7.81 16 13 N -0.73 -25.87 4.96 -478.54 -2.37 -28.25 16 14 C 0.70 24.72 8.32 179.06 1.49 26.21 16 15 O -0.64 -28.53 15.66 -4.00 -0.06 -28.59 16 16 N -0.73 -18.39 5.03 -461.42 -2.32 -20.71 16 17 C 0.17 3.75 1.97 44.24 0.09 3.84 16 18 C -0.12 -2.66 5.14 30.23 0.16 -2.51 16 19 C -0.09 -1.66 5.62 30.07 0.17 -1.49 16 20 C -0.16 -2.40 9.34 27.37 0.26 -2.15 16 21 C -0.16 -2.01 9.34 27.37 0.26 -1.75 16 22 C -0.09 -1.17 5.62 30.07 0.17 -1.00 16 23 C -0.11 -1.66 5.06 30.22 0.15 -1.50 16 24 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 25 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 29 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 30 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 31 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.40 12.32 6.18 -92.71 -0.57 11.75 16 34 H 0.41 7.61 8.58 -92.71 -0.80 6.82 16 35 H 0.06 1.55 7.34 -2.39 -0.02 1.53 16 36 H 0.07 1.46 7.86 -2.39 -0.02 1.44 16 37 H 0.04 1.17 7.62 -2.39 -0.02 1.15 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.34 6.68 -2.38 -0.02 1.32 16 40 H 0.12 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.07 1.01 6.68 -2.38 -0.02 0.99 16 43 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.08 1.05 7.86 -2.39 -0.02 1.03 16 Total: -1.00 -63.38 344.43 1.98 -61.40 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -0.39 Total: 25.00 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 4.90 Total: -5.89 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -4.50 Total: -96.90 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.06 Total: -28.59 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -63.38 1.98 -61.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.322 kcal (2) G-P(sol) polarization free energy of solvation -63.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds