Wall clock time and date at job start Tue Mar 31 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.50700 * 109.47527 * 239.99911 * 2 1 3 5 5 H 1.07996 * 120.00218 * 240.00339 * 4 2 1 6 6 C 1.37874 * 119.99965 * 59.99537 * 4 2 1 7 7 N 1.31518 * 119.99902 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00126 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47283 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46895 * 120.00528 * 8 6 4 11 11 H 1.48504 * 109.47148 * 240.00335 * 8 6 4 12 12 C 1.53001 * 109.47289 * 120.00070 * 2 1 3 13 13 N 1.46510 * 109.46777 * 300.00024 * 12 2 1 14 14 C 1.34773 * 119.99859 * 179.97438 * 13 12 2 15 15 O 1.21592 * 120.00182 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00000 * 179.97438 * 14 13 12 17 17 C 1.46504 * 120.00071 * 179.97438 * 16 14 13 18 18 H 1.08999 * 112.82735 * 24.04063 * 17 16 14 19 19 C 1.53633 * 113.52667 * 253.07503 * 17 16 14 20 20 C 1.53510 * 87.59085 * 221.15932 * 19 17 16 21 21 H 1.09000 * 116.73851 * 142.54314 * 20 19 17 22 22 C 1.54684 * 113.40341 * 279.72651 * 20 19 17 23 23 C 1.54887 * 102.82314 * 131.24988 * 22 20 19 24 24 C 1.54232 * 104.20238 * 321.95104 * 23 22 20 25 25 C 1.53821 * 113.52133 * 154.99962 * 17 16 14 26 26 H 1.09000 * 115.63086 * 20.21658 * 25 17 16 27 27 H 1.08998 * 109.47374 * 300.00535 * 1 2 3 28 28 H 1.09004 * 109.47328 * 60.00125 * 1 2 3 29 29 H 1.08999 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46993 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46832 * 299.99857 * 3 2 1 32 32 H 1.08996 * 109.47224 * 59.99999 * 3 2 1 33 33 H 0.97000 * 119.99784 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47425 * 180.02562 * 12 2 1 35 35 H 1.08999 * 109.47129 * 59.99324 * 12 2 1 36 36 H 0.96998 * 119.99638 * 359.97438 * 13 12 2 37 37 H 0.96999 * 119.99929 * 0.02562 * 16 14 13 38 38 H 1.09003 * 113.53096 * 335.83769 * 19 17 16 39 39 H 1.08996 * 113.52654 * 106.40440 * 19 17 16 40 40 H 1.08997 * 110.74791 * 12.91449 * 22 20 19 41 41 H 1.08999 * 110.74461 * 249.57771 * 22 20 19 42 42 H 1.08994 * 110.48298 * 80.63553 * 23 22 20 43 43 H 1.09003 * 110.48304 * 203.27044 * 23 22 20 44 44 H 1.09004 * 110.01575 * 142.93514 * 24 23 22 45 45 H 1.09003 * 110.02112 * 264.33334 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6695 15 8 2.5750 -1.4804 3.7811 16 7 1.4279 0.1443 4.7699 17 6 1.7809 -0.3568 6.1006 18 1 2.6977 -0.9464 6.1009 19 6 0.6128 -1.0391 6.8287 20 6 1.0820 -0.3319 8.1079 21 1 0.3051 0.0268 8.7831 22 6 2.2732 -1.0371 8.7981 23 6 3.2620 0.1277 9.0520 24 6 3.1325 1.0144 7.7968 25 6 1.7465 0.7254 7.1931 26 1 1.1580 1.6126 6.9596 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 0.7094 1.1616 -3.4844 34 1 3.1300 -0.7209 1.2495 35 1 1.6765 -1.7489 1.2493 36 1 0.9942 0.7583 2.3564 37 1 0.8705 0.9332 4.6809 38 1 -0.3672 -0.7094 6.4836 39 1 0.7018 -2.1245 6.8724 40 1 2.7161 -1.7824 8.1376 41 1 1.9610 -1.4904 9.7390 42 1 2.9745 0.6845 9.9438 43 1 4.2798 -0.2502 9.1488 44 1 3.2070 2.0661 8.0735 45 1 3.9125 0.7609 7.0787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895302115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:29 Heat of formation + Delta-G solvation = -29.745566 kcal Electronic energy + Delta-G solvation = -22401.458790 eV Core-core repulsion = 19225.646289 eV Total energy + Delta-G solvation = -3175.812501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83521 -39.09001 -36.38384 -34.22083 -33.21548 -31.87736 -30.59352 -28.91811 -25.69708 -25.67730 -25.11690 -24.46704 -23.10299 -21.00719 -20.36586 -18.95903 -18.74883 -17.67188 -16.91049 -15.79368 -15.20903 -14.99172 -14.86582 -14.65911 -14.15285 -13.89743 -13.62451 -13.32048 -12.92564 -12.83871 -12.50564 -12.15288 -12.08827 -11.44326 -11.37428 -11.27791 -11.17881 -10.99348 -10.86582 -10.74927 -10.64127 -10.46298 -10.35043 -10.32159 -10.18638 -9.70449 -9.60250 -9.27176 -8.83521 -8.75533 -8.39386 -8.14050 -6.00256 -4.09952 3.18319 3.28617 3.37204 3.42669 3.66260 4.08605 4.30133 4.38639 4.42074 4.79595 4.82209 4.99703 5.05543 5.19536 5.26638 5.27383 5.36669 5.46947 5.57674 5.60975 5.78701 5.80163 5.86087 5.93160 6.07812 6.17914 6.24553 6.29113 6.40343 6.54154 6.78947 6.83797 6.85684 6.95152 7.06208 7.14443 7.35963 7.47442 7.58666 7.72274 8.03827 8.15337 8.41117 8.54774 8.90465 9.10984 9.55807 11.01231 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.043270 B = 0.003073 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.940541 B = 9108.430827 C = 9171.966702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.734 5.734 14 C 0.697 3.303 15 O -0.601 6.601 16 N -0.743 5.743 17 C 0.155 3.845 18 H 0.113 0.887 19 C -0.147 4.147 20 C -0.111 4.111 21 H 0.089 0.911 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.123 4.123 26 H 0.098 0.902 27 H 0.005 0.995 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.005 0.995 33 H 0.259 0.741 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.393 0.607 37 H 0.393 0.607 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 2.430 20.538 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.388 5.388 14 C 0.397 3.603 15 O -0.481 6.481 16 N -0.398 5.398 17 C 0.048 3.952 18 H 0.131 0.869 19 C -0.186 4.186 20 C -0.130 4.130 21 H 0.107 0.893 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.156 4.156 25 C -0.142 4.142 26 H 0.116 0.884 27 H 0.024 0.976 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.227 0.773 37 H 0.226 0.774 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.360 1.611 20.429 20.496 hybrid contribution -0.281 0.375 -0.976 1.082 sum -0.641 1.985 19.454 19.565 Atomic orbital electron populations 1.21814 0.97804 0.99142 0.99968 1.18363 0.92775 0.92766 0.90593 1.21817 0.98556 0.98379 0.99969 1.21042 1.31291 1.12056 0.89887 0.92351 1.24883 0.94891 0.94942 0.98852 1.69820 1.36844 1.22818 1.23058 0.86519 0.78630 0.79774 0.82989 1.19729 1.21088 1.21083 1.21570 0.97824 0.95401 0.82465 1.45521 1.55633 1.32974 1.04673 1.16141 0.80378 0.83025 0.80767 1.90868 1.43323 1.27754 1.86106 1.45153 1.56928 1.32971 1.04735 1.22362 0.98625 0.95035 0.79138 0.86947 1.23342 0.99246 1.00641 0.95360 1.23097 0.97678 0.96888 0.95340 0.89264 1.22393 0.94844 0.97512 1.00339 1.22384 0.99365 0.96427 0.97782 1.22108 0.96647 0.99684 0.97161 1.23792 0.96965 0.97397 0.96056 0.88387 0.97562 0.89677 0.95471 0.95480 0.89668 0.97567 0.93111 0.93031 0.93020 0.77263 0.77380 0.89915 0.91011 0.90876 0.91486 0.91722 0.91594 0.91916 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.15 0.30 -2.65 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 4 C -0.50 -13.36 8.01 -34.44 -0.28 -13.64 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.77 9.35 55.43 0.52 -23.25 16 8 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 13 N -0.73 -13.49 4.96 -65.22 -0.32 -13.81 16 14 C 0.70 12.72 8.57 -86.93 -0.74 11.98 16 15 O -0.60 -13.37 15.95 5.28 0.08 -13.28 16 16 N -0.74 -10.00 5.35 -57.93 -0.31 -10.31 16 17 C 0.15 1.85 3.28 -67.17 -0.22 1.63 16 18 H 0.11 1.60 6.76 -51.93 -0.35 1.25 16 19 C -0.15 -1.52 7.35 -26.14 -0.19 -1.71 16 20 C -0.11 -0.94 4.96 -88.52 -0.44 -1.38 16 21 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 22 C -0.11 -0.92 6.28 -24.85 -0.16 -1.08 16 23 C -0.12 -0.94 6.83 -25.09 -0.17 -1.11 16 24 C -0.12 -1.03 6.39 -25.61 -0.16 -1.20 16 25 C -0.12 -1.11 4.65 -88.77 -0.41 -1.53 16 26 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 28 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.39 6.46 6.18 -40.82 -0.25 6.21 16 37 H 0.39 4.24 8.76 -40.82 -0.36 3.88 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.67 7.30 -51.93 -0.38 0.29 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -29.25 345.60 -9.91 -39.17 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.71 Total: 7.60 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.36 Total: -7.18 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.12 Total: -47.37 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.25 -9.91 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895302115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.424 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds