Wall clock time and date at job start Tue Mar 31 2020 01:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47544 * 2 1 4 4 C 1.53007 * 109.47052 * 239.99895 * 2 1 3 5 5 N 1.46903 * 109.47225 * 120.00250 * 2 1 3 6 6 C 1.47479 * 111.00080 * 156.45161 * 5 2 1 7 7 C 1.53511 * 87.93229 * 221.29406 * 6 5 2 8 8 C 1.47478 * 111.00133 * 60.48071 * 5 2 1 9 9 H 1.09002 * 113.47605 * 253.52808 * 8 5 2 10 10 C 1.50700 * 113.48001 * 23.93876 * 8 5 2 11 11 O 1.21284 * 119.99642 * 289.19667 * 10 8 5 12 12 N 1.34769 * 120.00072 * 109.19267 * 10 8 5 13 13 C 1.46500 * 119.99932 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47269 * 182.93140 * 13 12 10 15 15 C 1.50696 * 115.56301 * 319.88666 * 14 13 12 16 16 H 1.08005 * 120.00260 * 94.52594 * 15 14 13 17 17 C 1.37873 * 119.99848 * 274.52522 * 15 14 13 18 18 N 1.31516 * 120.00348 * 6.21968 * 17 15 14 19 19 Si 1.86798 * 119.99985 * 186.21835 * 17 15 14 20 20 H 1.48499 * 109.47092 * 89.99980 * 19 17 15 21 21 H 1.48499 * 109.47460 * 209.99936 * 19 17 15 22 22 H 1.48496 * 109.47396 * 329.99941 * 19 17 15 23 23 C 1.53001 * 117.49966 * 174.19214 * 14 13 12 24 24 C 1.53004 * 60.00232 * 252.51406 * 23 14 13 25 25 H 1.09000 * 109.46981 * 308.16222 * 1 2 3 26 26 H 1.08996 * 109.47394 * 68.16736 * 1 2 3 27 27 H 1.09000 * 109.47400 * 188.16707 * 1 2 3 28 28 H 1.08996 * 109.47419 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46373 * 300.00331 * 3 2 1 30 30 H 1.09001 * 109.46802 * 59.99641 * 3 2 1 31 31 H 1.09002 * 109.46589 * 256.61263 * 4 2 1 32 32 H 1.08997 * 109.46695 * 16.60501 * 4 2 1 33 33 H 1.08999 * 109.47004 * 136.61292 * 4 2 1 34 34 H 1.08998 * 113.47747 * 336.06083 * 6 5 2 35 35 H 1.09000 * 113.47633 * 106.52889 * 6 5 2 36 36 H 1.09005 * 114.17356 * 272.38022 * 7 6 5 37 37 H 1.08997 * 114.17294 * 139.67505 * 7 6 5 38 38 H 0.96995 * 119.99988 * 0.02562 * 12 10 8 39 39 H 1.09004 * 109.47211 * 62.93790 * 13 12 10 40 40 H 1.09001 * 109.47168 * 302.93508 * 13 12 10 41 41 H 0.96991 * 120.00579 * 174.99385 * 18 17 15 42 42 H 1.08994 * 117.49828 * 145.02417 * 23 14 13 43 43 H 1.08999 * 117.49671 * 0.02562 * 23 14 13 44 44 H 1.09001 * 117.49945 * 107.48719 * 24 23 14 45 45 H 1.08995 * 117.50179 * 252.49186 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0197 -0.6926 1.1994 6 6 3.3858 -1.2077 0.9915 7 6 2.9549 -2.4870 1.7224 8 6 1.5563 -2.0924 1.2277 9 1 0.7687 -2.2743 1.9589 10 6 1.2243 -2.6426 -0.1354 11 8 0.2398 -2.2494 -0.7247 12 7 2.0213 -3.5715 -0.6996 13 6 1.6988 -4.1059 -2.0249 14 6 2.7132 -5.1885 -2.3990 15 6 4.1427 -4.8991 -2.0196 16 1 4.5401 -5.2723 -1.0872 17 6 4.9431 -4.1580 -2.8627 18 7 4.4283 -3.6007 -3.9370 19 14 6.7589 -3.9454 -2.4792 20 1 7.5310 -5.0428 -3.1155 21 1 7.2271 -2.6394 -3.0085 22 1 6.9623 -3.9851 -1.0088 23 6 2.4696 -5.9683 -3.6926 24 6 2.2471 -6.6446 -2.3384 25 1 -0.3633 0.6350 0.8080 26 1 -0.3634 0.3822 -0.9539 27 1 -0.3634 -1.0172 0.1460 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9562 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 2.3854 -1.7187 -0.9773 32 1 1.2326 -0.8024 -1.9770 33 1 2.8652 -0.1568 -1.6833 34 1 3.6339 -1.3696 -0.0574 35 1 4.1495 -0.6401 1.5233 36 1 3.0738 -2.4441 2.8051 37 1 3.3419 -3.4053 1.2808 38 1 2.8084 -3.8861 -0.2281 39 1 1.7376 -3.3021 -2.7602 40 1 0.6974 -4.5361 -2.0094 41 1 4.9733 -3.0202 -4.4908 42 1 3.3432 -6.2719 -4.2693 43 1 1.5869 -5.7097 -4.2774 44 1 1.2178 -6.8312 -2.0320 45 1 2.9742 -7.3934 -2.0242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897634652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:00 Heat of formation + Delta-G solvation = 79.781114 kcal Electronic energy + Delta-G solvation = -24455.825599 eV Core-core repulsion = 21284.762531 eV Total energy + Delta-G solvation = -3171.063068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.13056 -37.92895 -36.68646 -35.00177 -33.20669 -32.09646 -27.81957 -27.45224 -27.13916 -26.53537 -25.60930 -24.67016 -21.39341 -21.13139 -19.73142 -19.63377 -18.32227 -16.85311 -16.23384 -15.80383 -15.43447 -15.20967 -14.72938 -14.39852 -14.19666 -13.84404 -13.53292 -13.01190 -12.80125 -12.58797 -12.27237 -12.19374 -11.85910 -11.69881 -11.52294 -11.30078 -11.11041 -11.00294 -10.84009 -10.72353 -10.63583 -10.58910 -10.39974 -10.28227 -9.98568 -9.65578 -9.08264 -9.00465 -8.61689 -8.40846 -8.28319 -7.96288 -6.18885 -4.29231 3.06647 3.17180 3.25945 3.27016 3.78063 4.10437 4.25037 4.48374 4.97754 5.08147 5.10063 5.17827 5.24869 5.37107 5.43068 5.60097 5.70270 5.82077 5.91381 5.93446 5.94814 6.00809 6.10429 6.15049 6.19337 6.24602 6.26281 6.33332 6.42799 6.48609 6.53954 6.59770 6.67036 6.79324 6.84385 6.99183 7.03531 7.24447 7.26692 7.35693 7.46311 7.69212 8.23779 8.25797 8.73215 8.83122 9.38887 10.88267 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.007141 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.360748 B = 3920.196813 C = 4552.300339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.067 3.933 3 C -0.127 4.127 4 C -0.204 4.204 5 N -0.440 5.440 6 C -0.024 4.024 7 C -0.145 4.145 8 C 0.005 3.995 9 H 0.117 0.883 10 C 0.511 3.489 11 O -0.541 6.541 12 N -0.700 5.700 13 C 0.163 3.837 14 C 0.028 3.972 15 C -0.507 4.507 16 H 0.061 0.939 17 C 0.079 3.921 18 N -0.867 5.867 19 Si 0.885 3.115 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.150 4.150 24 C -0.211 4.211 25 H 0.034 0.966 26 H 0.047 0.953 27 H 0.122 0.878 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.406 0.594 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.262 0.738 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.793 3.473 8.402 9.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.022 4.022 3 C -0.185 4.185 4 C -0.262 4.262 5 N -0.164 5.164 6 C -0.153 4.153 7 C -0.183 4.183 8 C -0.108 4.108 9 H 0.135 0.865 10 C 0.298 3.702 11 O -0.422 6.422 12 N -0.353 5.353 13 C 0.039 3.961 14 C 0.027 3.973 15 C -0.545 4.545 16 H 0.079 0.921 17 C -0.126 4.126 18 N -0.502 5.502 19 Si 0.712 3.288 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.188 4.188 24 C -0.248 4.248 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.139 0.861 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.245 0.755 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.582 4.294 8.297 10.005 hybrid contribution 1.638 -0.224 -0.622 1.767 sum -1.943 4.069 7.675 8.902 Atomic orbital electron populations 1.22804 0.92739 1.06993 1.00009 1.21521 0.97028 0.94557 0.89110 1.21757 1.00411 0.94957 1.01376 1.23550 1.01593 1.02581 0.98526 1.69323 1.03878 1.08555 1.34612 1.24173 0.93536 0.95530 1.02036 1.23268 0.94639 0.98598 1.01806 1.23363 0.99914 0.91955 0.95543 0.86472 1.19981 0.83423 0.79605 0.87143 1.90534 1.28931 1.58381 1.64314 1.46457 1.28141 1.40562 1.20135 1.20888 0.95577 0.97067 0.82529 1.19023 0.94232 0.86421 0.97634 1.20289 0.93245 1.35530 1.05387 0.92128 1.24966 0.98018 0.95176 0.94452 1.69970 1.36371 1.29264 1.14583 0.86722 0.85658 0.77613 0.78804 1.20536 1.21211 1.19634 1.22481 1.00686 1.05261 0.90405 1.23093 0.99243 0.98998 1.03485 0.94676 0.93365 0.86078 0.93163 0.92569 0.92492 0.88003 0.90816 0.93752 0.88847 0.89701 0.88239 0.89664 0.75473 0.91539 0.94317 0.92781 0.89877 0.91746 0.91619 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 7.57 37.16 0.28 -2.49 16 2 C 0.07 1.09 0.72 -131.60 -0.09 0.99 16 3 C -0.13 -1.83 8.41 37.16 0.31 -1.52 16 4 C -0.20 -3.77 6.19 37.16 0.23 -3.54 16 5 N -0.44 -6.66 6.14 -222.25 -1.37 -8.03 16 6 C -0.02 -0.35 7.11 -7.55 -0.05 -0.41 16 7 C -0.15 -1.87 7.83 -26.20 -0.21 -2.08 16 8 C 0.00 0.07 3.88 -72.59 -0.28 -0.21 16 9 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 10 C 0.51 9.05 4.05 -10.99 -0.04 9.01 16 11 O -0.54 -10.78 10.53 5.55 0.06 -10.72 16 12 N -0.70 -13.04 4.13 -70.56 -0.29 -13.33 16 13 C 0.16 3.46 5.71 -4.04 -0.02 3.44 16 14 C 0.03 0.61 1.73 -155.66 -0.27 0.34 16 15 C -0.51 -12.10 7.41 -34.44 -0.26 -12.35 16 16 H 0.06 1.42 7.82 -52.48 -0.41 1.01 16 17 C 0.08 1.97 5.39 -17.82 -0.10 1.87 16 18 N -0.87 -22.68 12.91 55.43 0.72 -21.96 16 19 Si 0.88 19.41 29.55 -169.99 -5.02 14.38 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 C -0.15 -3.31 9.44 -26.73 -0.25 -3.56 16 24 C -0.21 -4.26 9.88 -26.72 -0.26 -4.52 16 25 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 26 H 0.05 0.80 7.96 -51.93 -0.41 0.39 16 27 H 0.12 2.18 4.05 -55.99 -0.23 1.95 16 28 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 29 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.95 1.83 -71.96 -0.13 1.82 16 32 H 0.07 1.50 6.61 -51.93 -0.34 1.16 16 33 H 0.04 0.81 7.67 -51.93 -0.40 0.42 16 34 H 0.09 1.58 5.14 -51.93 -0.27 1.31 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.12 5.95 -51.93 -0.31 0.81 16 38 H 0.41 7.31 4.88 -40.82 -0.20 7.11 16 39 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.04 0.81 7.95 -51.93 -0.41 0.39 16 41 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 42 H 0.08 1.96 8.14 -51.93 -0.42 1.53 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 45 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -25.77 335.57 -9.17 -34.94 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -7.31 Total: 14.70 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.02 Total: -15.04 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.94 Total: -43.32 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.06 Total: -10.72 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -25.77 -9.17 -34.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897634652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.723 kcal (2) G-P(sol) polarization free energy of solvation -25.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds