Wall clock time and date at job start Tue Mar 31 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47544 * 2 1 4 4 C 1.53007 * 109.47052 * 239.99895 * 2 1 3 5 5 N 1.46903 * 109.47225 * 120.00250 * 2 1 3 6 6 C 1.47479 * 111.00080 * 156.45161 * 5 2 1 7 7 C 1.53511 * 87.93229 * 221.29406 * 6 5 2 8 8 C 1.47478 * 111.00133 * 60.48071 * 5 2 1 9 9 H 1.09002 * 113.47605 * 253.52808 * 8 5 2 10 10 C 1.50700 * 113.48001 * 23.93876 * 8 5 2 11 11 O 1.21284 * 119.99642 * 289.19667 * 10 8 5 12 12 N 1.34769 * 120.00072 * 109.19267 * 10 8 5 13 13 C 1.46500 * 119.99932 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47269 * 182.93140 * 13 12 10 15 15 C 1.50696 * 115.56301 * 319.88666 * 14 13 12 16 16 H 1.08005 * 120.00260 * 94.52594 * 15 14 13 17 17 C 1.37873 * 119.99848 * 274.52522 * 15 14 13 18 18 N 1.31516 * 120.00348 * 6.21968 * 17 15 14 19 19 Si 1.86798 * 119.99985 * 186.21835 * 17 15 14 20 20 H 1.48499 * 109.47092 * 89.99980 * 19 17 15 21 21 H 1.48499 * 109.47460 * 209.99936 * 19 17 15 22 22 H 1.48496 * 109.47396 * 329.99941 * 19 17 15 23 23 C 1.53001 * 117.49966 * 174.19214 * 14 13 12 24 24 C 1.53004 * 60.00232 * 252.51406 * 23 14 13 25 25 H 1.09000 * 109.46981 * 308.16222 * 1 2 3 26 26 H 1.08996 * 109.47394 * 68.16736 * 1 2 3 27 27 H 1.09000 * 109.47400 * 188.16707 * 1 2 3 28 28 H 1.08996 * 109.47419 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46373 * 300.00331 * 3 2 1 30 30 H 1.09001 * 109.46802 * 59.99641 * 3 2 1 31 31 H 1.09002 * 109.46589 * 256.61263 * 4 2 1 32 32 H 1.08997 * 109.46695 * 16.60501 * 4 2 1 33 33 H 1.08999 * 109.47004 * 136.61292 * 4 2 1 34 34 H 1.08998 * 113.47747 * 336.06083 * 6 5 2 35 35 H 1.09000 * 113.47633 * 106.52889 * 6 5 2 36 36 H 1.09005 * 114.17356 * 272.38022 * 7 6 5 37 37 H 1.08997 * 114.17294 * 139.67505 * 7 6 5 38 38 H 0.96995 * 119.99988 * 0.02562 * 12 10 8 39 39 H 1.09004 * 109.47211 * 62.93790 * 13 12 10 40 40 H 1.09001 * 109.47168 * 302.93508 * 13 12 10 41 41 H 0.96991 * 120.00579 * 174.99385 * 18 17 15 42 42 H 1.08994 * 117.49828 * 145.02417 * 23 14 13 43 43 H 1.08999 * 117.49671 * 0.02562 * 23 14 13 44 44 H 1.09001 * 117.49945 * 107.48719 * 24 23 14 45 45 H 1.08995 * 117.50179 * 252.49186 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0197 -0.6926 1.1994 6 6 3.3858 -1.2077 0.9915 7 6 2.9549 -2.4870 1.7224 8 6 1.5563 -2.0924 1.2277 9 1 0.7687 -2.2743 1.9589 10 6 1.2243 -2.6426 -0.1354 11 8 0.2398 -2.2494 -0.7247 12 7 2.0213 -3.5715 -0.6996 13 6 1.6988 -4.1059 -2.0249 14 6 2.7132 -5.1885 -2.3990 15 6 4.1427 -4.8991 -2.0196 16 1 4.5401 -5.2723 -1.0872 17 6 4.9431 -4.1580 -2.8627 18 7 4.4283 -3.6007 -3.9370 19 14 6.7589 -3.9454 -2.4792 20 1 7.5310 -5.0428 -3.1155 21 1 7.2271 -2.6394 -3.0085 22 1 6.9623 -3.9851 -1.0088 23 6 2.4696 -5.9683 -3.6926 24 6 2.2471 -6.6446 -2.3384 25 1 -0.3633 0.6350 0.8080 26 1 -0.3634 0.3822 -0.9539 27 1 -0.3634 -1.0172 0.1460 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9562 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 2.3854 -1.7187 -0.9773 32 1 1.2326 -0.8024 -1.9770 33 1 2.8652 -0.1568 -1.6833 34 1 3.6339 -1.3696 -0.0574 35 1 4.1495 -0.6401 1.5233 36 1 3.0738 -2.4441 2.8051 37 1 3.3419 -3.4053 1.2808 38 1 2.8084 -3.8861 -0.2281 39 1 1.7376 -3.3021 -2.7602 40 1 0.6974 -4.5361 -2.0094 41 1 4.9733 -3.0202 -4.4908 42 1 3.3432 -6.2719 -4.2693 43 1 1.5869 -5.7097 -4.2774 44 1 1.2178 -6.8312 -2.0320 45 1 2.9742 -7.3934 -2.0242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897634652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:59 Heat of formation + Delta-G solvation = 63.784902 kcal Electronic energy + Delta-G solvation = -24456.519246 eV Core-core repulsion = 21284.762531 eV Total energy + Delta-G solvation = -3171.756716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.43744 -39.40328 -38.32999 -36.32044 -34.72218 -33.98764 -29.16999 -28.87615 -28.36004 -27.94824 -27.36743 -26.12572 -22.96266 -22.56296 -21.36239 -21.04082 -19.77737 -18.26450 -17.87937 -17.08757 -16.96058 -16.70865 -16.40392 -15.87828 -15.58975 -15.32707 -14.99968 -14.52943 -14.31653 -14.03002 -13.68026 -13.49365 -13.39126 -13.28933 -12.92911 -12.81097 -12.77607 -12.62805 -12.34603 -12.07131 -12.01673 -11.96265 -11.90165 -11.66943 -11.41292 -11.27071 -10.86996 -10.46862 -10.37592 -10.08458 -9.72658 -9.55139 -8.09135 -6.23007 1.42115 1.47101 1.53035 1.65410 2.33688 2.43458 2.90074 3.19857 3.35362 3.47152 3.75170 3.81954 3.98050 4.03534 4.20252 4.27552 4.38739 4.47906 4.53852 4.57488 4.60835 4.68073 4.75337 4.78450 4.80376 4.91018 4.94134 4.99442 5.01587 5.03938 5.06089 5.13755 5.22102 5.26598 5.30270 5.37939 5.47402 5.58902 5.64169 5.76778 5.92344 6.00095 6.38346 6.76784 6.86294 7.38853 7.47544 8.97517 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.007141 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.360748 B = 3920.196813 C = 4552.300339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.068 3.932 3 C -0.123 4.123 4 C -0.197 4.197 5 N -0.432 5.432 6 C -0.030 4.030 7 C -0.128 4.128 8 C 0.003 3.997 9 H 0.138 0.862 10 C 0.510 3.490 11 O -0.566 6.566 12 N -0.698 5.698 13 C 0.179 3.821 14 C 0.007 3.993 15 C -0.504 4.504 16 H 0.067 0.933 17 C 0.036 3.964 18 N -0.900 5.900 19 Si 0.938 3.062 20 H -0.284 1.284 21 H -0.295 1.295 22 H -0.254 1.254 23 C -0.162 4.162 24 C -0.182 4.182 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.084 0.916 38 H 0.410 0.590 39 H 0.028 0.972 40 H 0.040 0.960 41 H 0.257 0.743 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 3.303 11.183 11.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 C -0.181 4.181 4 C -0.256 4.256 5 N -0.155 5.155 6 C -0.159 4.159 7 C -0.165 4.165 8 C -0.109 4.109 9 H 0.155 0.845 10 C 0.299 3.701 11 O -0.447 6.447 12 N -0.352 5.352 13 C 0.055 3.945 14 C 0.007 3.993 15 C -0.541 4.541 16 H 0.085 0.915 17 C -0.166 4.166 18 N -0.537 5.537 19 Si 0.764 3.236 20 H -0.210 1.210 21 H -0.221 1.221 22 H -0.178 1.178 23 C -0.201 4.201 24 C -0.219 4.219 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.126 0.874 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.150 0.850 37 H 0.102 0.898 38 H 0.250 0.750 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.095 4.114 11.111 12.246 hybrid contribution 1.445 -0.188 -1.517 2.103 sum -1.650 3.926 9.594 10.497 Atomic orbital electron populations 1.22677 0.92922 1.06347 0.99958 1.21504 0.96865 0.95494 0.88339 1.21722 1.00535 0.93705 1.02142 1.23504 1.00178 1.02735 0.99188 1.69358 1.04260 1.08468 1.33385 1.24183 0.93668 0.97045 1.00992 1.23318 0.92253 0.97488 1.03477 1.23418 1.01963 0.91791 0.93739 0.84467 1.20576 0.82644 0.78744 0.88133 1.90547 1.29989 1.58839 1.65356 1.46347 1.28595 1.41045 1.19165 1.20501 0.95433 0.95510 0.83073 1.19123 0.94092 0.87980 0.98148 1.20554 0.93916 1.34450 1.05217 0.91456 1.25584 1.01228 0.95287 0.94459 1.70103 1.37386 1.30398 1.15780 0.85873 0.81622 0.76695 0.79411 1.21008 1.22115 1.17790 1.22401 1.00103 1.06563 0.90994 1.23091 1.00532 0.97345 1.00952 0.93093 0.94485 0.87385 0.92943 0.92482 0.91066 0.88423 0.93683 0.94607 0.91596 0.87779 0.84961 0.89795 0.74971 0.95393 0.94147 0.93426 0.91966 0.91420 0.89453 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 7.57 71.98 0.54 -4.67 16 2 C 0.07 2.13 0.72 3.53 0.00 2.13 16 3 C -0.12 -3.37 8.41 71.98 0.61 -2.76 16 4 C -0.20 -7.49 6.19 71.98 0.45 -7.04 16 5 N -0.43 -12.03 6.14 -857.05 -5.27 -17.30 16 6 C -0.03 -0.81 7.11 83.57 0.59 -0.22 16 7 C -0.13 -2.86 7.83 30.94 0.24 -2.62 16 8 C 0.00 0.09 3.88 41.44 0.16 0.25 16 9 H 0.14 3.25 8.14 -2.39 -0.02 3.23 16 10 C 0.51 17.78 4.05 87.66 0.35 18.14 16 11 O -0.57 -22.78 10.53 -3.04 -0.03 -22.82 16 12 N -0.70 -25.79 4.13 -495.55 -2.05 -27.83 16 13 C 0.18 7.74 5.71 86.38 0.49 8.23 16 14 C 0.01 0.32 1.73 -52.92 -0.09 0.23 16 15 C -0.50 -23.77 7.41 25.60 0.19 -23.58 16 16 H 0.07 3.04 7.82 -2.91 -0.02 3.01 16 17 C 0.04 1.80 5.39 84.65 0.46 2.26 16 18 N -0.90 -48.39 12.91 21.45 0.28 -48.11 16 19 Si 0.94 39.63 29.55 68.60 2.03 41.66 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 23 C -0.16 -7.21 9.44 30.60 0.29 -6.92 16 24 C -0.18 -7.06 9.88 30.60 0.30 -6.76 16 25 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 26 H 0.04 1.23 7.96 -2.39 -0.02 1.22 16 27 H 0.11 3.84 4.05 -66.68 -0.27 3.57 16 28 H 0.05 1.39 8.02 -2.39 -0.02 1.37 16 29 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.10 3.80 1.83 -21.21 -0.04 3.77 16 32 H 0.04 1.92 6.61 -2.39 -0.02 1.91 16 33 H 0.03 1.36 7.67 -2.39 -0.02 1.34 16 34 H 0.07 2.17 5.14 -2.39 -0.01 2.16 16 35 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.13 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.08 1.94 5.95 -2.39 -0.01 1.93 16 38 H 0.41 14.32 4.88 -92.71 -0.45 13.87 16 39 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.04 1.70 7.95 -2.39 -0.02 1.68 16 41 H 0.26 13.55 8.32 -92.72 -0.77 12.78 16 42 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.09 3.02 8.09 -2.39 -0.02 3.00 16 45 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -55.86 335.57 -0.22 -56.08 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: 0.23 Total: 41.66 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.59 Total: -23.33 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -7.04 Total: -93.25 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.03 Total: -22.82 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -55.86 -0.22 -56.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897634652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.861 kcal (2) G-P(sol) polarization free energy of solvation -55.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds