Wall clock time and date at job start Tue Mar 31 2020 01:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50691 * 120.00169 * 2 1 4 4 N 1.46507 * 109.47533 * 122.87262 * 3 2 1 5 5 C 1.46497 * 119.99528 * 273.97692 * 4 3 2 6 6 C 1.50704 * 109.47131 * 269.99487 * 5 4 3 7 7 H 1.08004 * 119.99672 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99956 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99728 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00179 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47154 * 90.00180 * 10 8 6 12 12 H 1.48509 * 109.46772 * 209.99961 * 10 8 6 13 13 H 1.48499 * 109.47100 * 329.99498 * 10 8 6 14 14 C 1.34766 * 120.00042 * 93.97069 * 4 3 2 15 15 O 1.21284 * 120.00057 * 175.16429 * 14 4 3 16 16 C 1.50705 * 120.00248 * 354.89239 * 14 4 3 17 17 H 1.08998 * 112.95521 * 359.44063 * 16 14 4 18 18 C 1.53941 * 113.75735 * 227.80293 * 16 14 4 19 19 C 1.53935 * 86.33564 * 269.39875 * 18 16 14 20 20 N 1.47953 * 113.76285 * 131.23801 * 16 14 4 21 21 C 1.46898 * 111.00118 * 336.73398 * 20 16 14 22 22 C 1.53002 * 109.47192 * 98.55845 * 21 20 16 23 23 C 1.52994 * 109.47567 * 218.56258 * 21 20 16 24 24 C 1.52999 * 109.47097 * 338.56162 * 21 20 16 25 25 H 1.08002 * 120.00017 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00063 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.99591 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47479 * 2.86970 * 3 2 1 29 29 H 1.09007 * 109.47374 * 242.87188 * 3 2 1 30 30 H 1.08996 * 109.47499 * 29.99388 * 5 4 3 31 31 H 1.08997 * 109.47098 * 149.99859 * 5 4 3 32 32 H 0.97000 * 120.00112 * 179.97438 * 9 8 6 33 33 H 1.09001 * 113.73341 * 23.75509 * 18 16 14 34 34 H 1.08994 * 113.73263 * 154.93486 * 18 16 14 35 35 H 1.09005 * 113.76181 * 90.60095 * 19 18 16 36 36 H 1.09004 * 113.76184 * 221.96076 * 19 18 16 37 37 H 1.09001 * 109.46985 * 67.70788 * 22 21 20 38 38 H 1.09002 * 109.47585 * 187.70207 * 22 21 20 39 39 H 1.08995 * 109.47540 * 307.70875 * 22 21 20 40 40 H 1.09002 * 109.47255 * 59.99771 * 23 21 20 41 41 H 1.08994 * 109.47958 * 180.02562 * 23 21 20 42 42 H 1.09002 * 109.46984 * 299.99921 * 23 21 20 43 43 H 1.09008 * 109.47227 * 92.87761 * 24 21 20 44 44 H 1.08998 * 109.47386 * 212.87706 * 24 21 20 45 45 H 1.09004 * 109.47037 * 332.88058 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9570 1.3531 1.1601 5 6 2.4553 1.8289 2.4516 6 6 2.6578 3.3190 2.5511 7 1 3.1142 3.8577 1.7338 8 6 2.2605 3.9944 3.6855 9 7 2.4377 5.2947 3.7725 10 14 1.4720 3.0626 5.0994 11 1 2.5260 2.6067 6.0408 12 1 0.5235 3.9554 5.8128 13 1 0.7393 1.8850 4.5686 14 6 4.2402 0.9596 1.0391 15 8 5.0026 1.0814 1.9744 16 6 4.7264 0.3626 -0.2565 17 1 3.9445 0.2941 -1.0128 18 6 5.5310 -0.9374 -0.0769 19 6 6.7776 -0.0380 0.0054 20 7 5.9872 0.9580 -0.7513 21 6 6.1813 2.3082 -0.2061 22 6 7.1316 2.2430 0.9912 23 6 6.7811 3.2124 -1.2847 24 6 4.8332 2.8755 0.2431 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3564 2.1329 0.0514 29 1 2.6510 1.3854 -0.9147 30 1 1.3929 1.6003 2.5354 31 1 2.9981 1.3340 3.2569 32 1 2.1579 5.7700 4.5704 33 1 5.3095 -1.4660 0.8503 34 1 5.5143 -1.5880 -0.9512 35 1 7.0260 0.2767 1.0190 36 1 7.6360 -0.4259 -0.5431 37 1 8.1296 1.9698 0.6485 38 1 7.1690 3.2171 1.4790 39 1 6.7734 1.4957 1.6992 40 1 6.1041 3.2589 -2.1377 41 1 6.9256 4.2141 -0.8801 42 1 7.7415 2.8083 -1.6047 43 1 4.6803 2.6555 1.2998 44 1 4.8246 3.9549 0.0918 45 1 4.0342 2.4201 -0.3421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897824155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:12 Heat of formation + Delta-G solvation = 107.210865 kcal Electronic energy + Delta-G solvation = -24586.909737 eV Core-core repulsion = 21417.036112 eV Total energy + Delta-G solvation = -3169.873625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.04112 -38.10364 -35.79901 -34.59090 -33.18766 -32.21907 -29.42053 -27.77509 -27.07179 -26.82359 -25.59906 -24.92678 -22.62423 -20.56931 -20.13295 -19.25411 -17.83247 -16.95752 -16.89036 -16.22172 -15.29320 -15.07744 -14.82094 -14.40204 -14.24863 -14.01812 -13.49417 -12.98523 -12.75959 -12.46378 -12.36146 -12.25333 -12.12309 -11.80978 -11.68253 -11.50880 -11.19884 -11.08108 -10.90453 -10.77147 -10.55662 -10.54160 -10.38164 -10.20927 -10.08748 -9.81760 -9.47591 -9.25004 -9.01961 -8.61194 -8.18066 -7.75348 -6.10752 -4.09750 2.35111 3.02486 3.26718 3.32866 3.34981 3.76042 4.24260 4.37317 4.67424 4.81978 5.04776 5.14854 5.21320 5.24549 5.31336 5.40950 5.49122 5.53586 5.68106 5.69017 5.86342 5.89533 5.93799 5.98438 6.02696 6.09339 6.18959 6.23239 6.28080 6.36888 6.42989 6.64723 6.68005 6.71150 6.74385 6.82523 6.88988 6.93664 7.15932 7.29983 7.40741 7.58096 8.13557 8.43644 8.85254 8.95509 9.49611 11.01764 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.007628 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.811674 B = 3669.591462 C = 4582.575754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.169 4.169 3 C 0.131 3.869 4 N -0.596 5.596 5 C 0.217 3.783 6 C -0.532 4.532 7 H 0.085 0.915 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.541 3.459 15 O -0.544 6.544 16 C -0.004 4.004 17 H 0.108 0.892 18 C -0.128 4.128 19 C -0.018 4.018 20 N -0.451 5.451 21 C 0.067 3.933 22 C -0.180 4.180 23 C -0.123 4.123 24 C -0.226 4.226 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.109 0.891 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.143 0.857 44 H 0.057 0.943 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 -11.107 -9.650 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.188 4.188 3 C 0.008 3.992 4 N -0.326 5.326 5 C 0.097 3.903 6 C -0.571 4.571 7 H 0.103 0.897 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.699 3.301 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.331 3.669 15 O -0.425 6.425 16 C -0.116 4.116 17 H 0.126 0.874 18 C -0.167 4.167 19 C -0.146 4.146 20 N -0.175 5.175 21 C -0.022 4.022 22 C -0.237 4.237 23 C -0.181 4.181 24 C -0.282 4.282 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.160 0.840 44 H 0.075 0.925 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.004 -10.738 -9.735 14.802 hybrid contribution -0.667 -0.085 1.415 1.567 sum 2.338 -10.823 -8.319 13.849 Atomic orbital electron populations 1.23854 0.95873 1.01844 1.00375 1.23420 0.96396 0.98948 1.00053 1.20701 0.93727 0.95535 0.89252 1.48083 1.09288 1.63305 1.11952 1.19656 0.94316 0.95937 0.80440 1.21432 1.40968 0.90479 1.04189 0.89689 1.24838 0.95331 0.94700 0.97939 1.69892 1.47396 1.07328 1.28741 0.86917 0.79781 0.80131 0.83272 1.20035 1.21164 1.19100 1.19613 0.82415 0.76017 0.88836 1.90554 1.52839 1.57798 1.41346 1.23657 0.96087 0.96398 0.95508 0.87434 1.23179 0.95750 0.95258 1.02475 1.24498 0.96713 0.92519 1.00914 1.69012 1.01832 1.01309 1.45310 1.21517 0.96937 0.89917 0.93805 1.22834 0.97609 1.04206 0.99006 1.21730 1.00002 0.98181 0.98150 1.24129 0.94437 1.01709 1.07899 0.88225 0.88712 0.87577 0.89244 0.89993 0.95243 0.94741 0.92605 0.90818 0.89164 0.87269 0.90242 0.93825 0.92633 0.87283 0.92816 0.92792 0.93300 0.84000 0.92455 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 29.01 0.42 -1.77 16 2 C -0.17 -2.22 9.82 -36.03 -0.35 -2.58 16 3 C 0.13 2.03 4.72 -5.19 -0.02 2.00 16 4 N -0.60 -11.45 1.60 -178.46 -0.28 -11.74 16 5 C 0.22 5.03 4.17 -5.19 -0.02 5.01 16 6 C -0.53 -14.43 8.93 -34.44 -0.31 -14.73 16 7 H 0.09 2.48 6.25 -52.48 -0.33 2.15 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 10 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 14 C 0.54 10.18 3.45 -10.99 -0.04 10.14 16 15 O -0.54 -11.86 10.38 5.55 0.06 -11.81 16 16 C 0.00 -0.06 3.35 -67.81 -0.23 -0.29 16 17 H 0.11 1.47 5.79 -51.93 -0.30 1.17 16 18 C -0.13 -1.67 7.79 -25.80 -0.20 -1.87 16 19 C -0.02 -0.26 6.72 -2.77 -0.02 -0.28 16 20 N -0.45 -6.99 6.15 -216.44 -1.33 -8.33 16 21 C 0.07 1.16 1.02 -131.61 -0.13 1.02 16 22 C -0.18 -3.13 6.55 37.16 0.24 -2.89 16 23 C -0.12 -1.88 8.60 37.15 0.32 -1.56 16 24 C -0.23 -4.48 5.44 37.16 0.20 -4.28 16 25 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 26 H 0.09 0.97 8.06 -52.48 -0.42 0.55 16 27 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.09 1.46 7.75 -51.93 -0.40 1.06 16 29 H 0.08 1.14 5.01 -51.92 -0.26 0.88 16 30 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 31 H 0.03 0.86 6.92 -51.93 -0.36 0.50 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.11 1.71 4.18 -51.93 -0.22 1.49 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.66 7.76 -51.93 -0.40 0.26 16 38 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 39 H 0.11 2.08 3.28 -51.93 -0.17 1.91 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.14 3.28 2.42 -56.41 -0.14 3.15 16 44 H 0.06 1.20 7.78 -51.93 -0.40 0.79 16 45 H 0.07 1.26 3.41 -51.93 -0.18 1.08 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -30.14 327.52 -7.67 -37.81 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.91 Total: 8.81 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -0.24 Total: -10.06 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.84 Total: -46.16 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.06 Total: -11.81 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.14 -7.67 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897824155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.021 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds