Wall clock time and date at job start Tue Mar 31 2020 01:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50691 * 120.00169 * 2 1 4 4 N 1.46507 * 109.47533 * 122.87262 * 3 2 1 5 5 C 1.46497 * 119.99528 * 273.97692 * 4 3 2 6 6 C 1.50704 * 109.47131 * 269.99487 * 5 4 3 7 7 H 1.08004 * 119.99672 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99956 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99728 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00179 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47154 * 90.00180 * 10 8 6 12 12 H 1.48509 * 109.46772 * 209.99961 * 10 8 6 13 13 H 1.48499 * 109.47100 * 329.99498 * 10 8 6 14 14 C 1.34766 * 120.00042 * 93.97069 * 4 3 2 15 15 O 1.21284 * 120.00057 * 175.16429 * 14 4 3 16 16 C 1.50705 * 120.00248 * 354.89239 * 14 4 3 17 17 H 1.08998 * 112.95521 * 359.44063 * 16 14 4 18 18 C 1.53941 * 113.75735 * 227.80293 * 16 14 4 19 19 C 1.53935 * 86.33564 * 269.39875 * 18 16 14 20 20 N 1.47953 * 113.76285 * 131.23801 * 16 14 4 21 21 C 1.46898 * 111.00118 * 336.73398 * 20 16 14 22 22 C 1.53002 * 109.47192 * 98.55845 * 21 20 16 23 23 C 1.52994 * 109.47567 * 218.56258 * 21 20 16 24 24 C 1.52999 * 109.47097 * 338.56162 * 21 20 16 25 25 H 1.08002 * 120.00017 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00063 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.99591 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47479 * 2.86970 * 3 2 1 29 29 H 1.09007 * 109.47374 * 242.87188 * 3 2 1 30 30 H 1.08996 * 109.47499 * 29.99388 * 5 4 3 31 31 H 1.08997 * 109.47098 * 149.99859 * 5 4 3 32 32 H 0.97000 * 120.00112 * 179.97438 * 9 8 6 33 33 H 1.09001 * 113.73341 * 23.75509 * 18 16 14 34 34 H 1.08994 * 113.73263 * 154.93486 * 18 16 14 35 35 H 1.09005 * 113.76181 * 90.60095 * 19 18 16 36 36 H 1.09004 * 113.76184 * 221.96076 * 19 18 16 37 37 H 1.09001 * 109.46985 * 67.70788 * 22 21 20 38 38 H 1.09002 * 109.47585 * 187.70207 * 22 21 20 39 39 H 1.08995 * 109.47540 * 307.70875 * 22 21 20 40 40 H 1.09002 * 109.47255 * 59.99771 * 23 21 20 41 41 H 1.08994 * 109.47958 * 180.02562 * 23 21 20 42 42 H 1.09002 * 109.46984 * 299.99921 * 23 21 20 43 43 H 1.09008 * 109.47227 * 92.87761 * 24 21 20 44 44 H 1.08998 * 109.47386 * 212.87706 * 24 21 20 45 45 H 1.09004 * 109.47037 * 332.88058 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9570 1.3531 1.1601 5 6 2.4553 1.8289 2.4516 6 6 2.6578 3.3190 2.5511 7 1 3.1142 3.8577 1.7338 8 6 2.2605 3.9944 3.6855 9 7 2.4377 5.2947 3.7725 10 14 1.4720 3.0626 5.0994 11 1 2.5260 2.6067 6.0408 12 1 0.5235 3.9554 5.8128 13 1 0.7393 1.8850 4.5686 14 6 4.2402 0.9596 1.0391 15 8 5.0026 1.0814 1.9744 16 6 4.7264 0.3626 -0.2565 17 1 3.9445 0.2941 -1.0128 18 6 5.5310 -0.9374 -0.0769 19 6 6.7776 -0.0380 0.0054 20 7 5.9872 0.9580 -0.7513 21 6 6.1813 2.3082 -0.2061 22 6 7.1316 2.2430 0.9912 23 6 6.7811 3.2124 -1.2847 24 6 4.8332 2.8755 0.2431 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3564 2.1329 0.0514 29 1 2.6510 1.3854 -0.9147 30 1 1.3929 1.6003 2.5354 31 1 2.9981 1.3340 3.2569 32 1 2.1579 5.7700 4.5704 33 1 5.3095 -1.4660 0.8503 34 1 5.5143 -1.5880 -0.9512 35 1 7.0260 0.2767 1.0190 36 1 7.6360 -0.4259 -0.5431 37 1 8.1296 1.9698 0.6485 38 1 7.1690 3.2171 1.4790 39 1 6.7734 1.4957 1.6992 40 1 6.1041 3.2589 -2.1377 41 1 6.9256 4.2141 -0.8801 42 1 7.7415 2.8083 -1.6047 43 1 4.6803 2.6555 1.2998 44 1 4.8246 3.9549 0.0918 45 1 4.0342 2.4201 -0.3421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897824155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:11 Heat of formation + Delta-G solvation = 86.972657 kcal Electronic energy + Delta-G solvation = -24587.787331 eV Core-core repulsion = 21417.036112 eV Total energy + Delta-G solvation = -3170.751219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.40262 -39.49797 -37.20671 -35.91464 -34.97853 -33.77249 -31.11048 -29.34460 -28.32190 -28.13488 -26.94294 -26.35273 -24.36370 -21.94773 -21.29653 -20.53597 -19.34639 -18.83474 -18.25295 -17.62586 -16.77884 -16.60019 -16.19889 -15.89865 -15.61809 -15.50978 -14.76327 -14.57902 -14.27117 -13.98862 -13.69514 -13.59835 -13.55024 -13.37598 -13.03157 -12.92932 -12.90292 -12.53940 -12.40259 -12.24471 -12.02779 -11.92457 -11.81548 -11.71461 -11.50373 -11.42629 -11.16089 -10.79468 -10.55365 -10.30552 -9.52002 -9.34466 -8.29159 -6.32203 1.30580 1.34716 1.34906 1.43014 1.60068 2.31956 2.34335 3.00549 3.04787 3.52233 3.53883 3.79358 3.90226 4.05709 4.13612 4.21722 4.23302 4.31733 4.46157 4.52835 4.60545 4.68025 4.75155 4.79717 4.82935 4.84487 4.89207 4.90975 4.96131 4.97429 5.05854 5.09943 5.23558 5.28140 5.36319 5.44668 5.51962 5.56058 5.68542 5.73535 5.94704 6.02002 6.30198 6.65822 6.73005 7.27018 7.42345 8.86573 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.007628 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.811674 B = 3669.591462 C = 4582.575754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.180 4.180 3 C 0.129 3.871 4 N -0.601 5.601 5 C 0.229 3.771 6 C -0.528 4.528 7 H 0.051 0.949 8 C 0.013 3.987 9 N -0.945 5.945 10 Si 0.937 3.063 11 H -0.279 1.279 12 H -0.281 1.281 13 H -0.241 1.241 14 C 0.535 3.465 15 O -0.579 6.579 16 C -0.006 4.006 17 H 0.130 0.870 18 C -0.112 4.112 19 C -0.023 4.023 20 N -0.444 5.444 21 C 0.068 3.932 22 C -0.174 4.174 23 C -0.118 4.118 24 C -0.218 4.218 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.041 0.959 31 H 0.018 0.982 32 H 0.265 0.735 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.031 0.969 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.112 -14.210 -11.195 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.199 4.199 3 C 0.007 3.993 4 N -0.331 5.331 5 C 0.107 3.893 6 C -0.567 4.567 7 H 0.069 0.931 8 C -0.185 4.185 9 N -0.585 5.585 10 Si 0.761 3.239 11 H -0.205 1.205 12 H -0.206 1.206 13 H -0.165 1.165 14 C 0.327 3.673 15 O -0.462 6.462 16 C -0.118 4.118 17 H 0.147 0.853 18 C -0.150 4.150 19 C -0.151 4.151 20 N -0.167 5.167 21 C -0.021 4.021 22 C -0.231 4.231 23 C -0.176 4.176 24 C -0.274 4.274 25 H 0.113 0.887 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.050 0.950 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.571 -13.867 -11.323 18.086 hybrid contribution -0.507 0.925 1.844 2.125 sum 2.064 -12.942 -9.478 16.174 Atomic orbital electron populations 1.24075 0.95601 1.02863 0.98207 1.23298 0.96671 0.98005 1.01910 1.20852 0.93372 0.96743 0.88339 1.48079 1.10287 1.63185 1.11586 1.19248 0.94615 0.93003 0.82436 1.21693 1.39360 0.92621 1.02993 0.93118 1.25731 0.96296 0.95480 1.00963 1.70046 1.49474 1.09241 1.29768 0.85867 0.78873 0.79562 0.79571 1.20468 1.20615 1.16451 1.20325 0.81725 0.75399 0.89850 1.90547 1.53669 1.58998 1.42995 1.23695 0.96747 0.97661 0.93728 0.85286 1.23221 0.93580 0.94303 1.03898 1.24542 0.98177 0.92292 1.00107 1.69095 1.02347 1.00385 1.44854 1.21466 0.95066 0.91373 0.94228 1.22772 0.99066 1.02296 0.98933 1.21673 1.00892 0.97456 0.97537 1.23994 0.96963 1.00260 1.06187 0.88663 0.86257 0.85958 0.90811 0.88381 0.94128 0.96365 0.92622 0.91054 0.85716 0.89230 0.87616 0.91387 0.95156 0.88715 0.92235 0.93575 0.91457 0.87139 0.95022 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 14.32 67.78 0.97 -2.60 16 2 C -0.18 -4.24 9.82 25.64 0.25 -3.98 16 3 C 0.13 3.84 4.72 85.63 0.40 4.24 16 4 N -0.60 -23.00 1.60 -836.93 -1.34 -24.34 16 5 C 0.23 10.72 4.17 85.63 0.36 11.08 16 6 C -0.53 -29.72 8.93 25.60 0.23 -29.49 16 7 H 0.05 3.14 6.25 -2.91 -0.02 3.12 16 8 C 0.01 0.76 5.47 84.65 0.46 1.22 16 9 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 10 Si 0.94 44.19 27.47 68.60 1.88 46.07 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.24 -10.29 6.54 99.48 0.65 -9.63 16 14 C 0.54 19.95 3.45 87.66 0.30 20.25 16 15 O -0.58 -25.79 10.38 -3.04 -0.03 -25.82 16 16 C -0.01 -0.17 3.35 44.28 0.15 -0.02 16 17 H 0.13 3.07 5.79 -2.39 -0.01 3.06 16 18 C -0.11 -2.51 7.79 31.24 0.24 -2.26 16 19 C -0.02 -0.59 6.72 86.41 0.58 -0.01 16 20 N -0.44 -12.68 6.15 -838.69 -5.16 -17.84 16 21 C 0.07 2.30 1.02 3.53 0.00 2.31 16 22 C -0.17 -6.13 6.55 71.98 0.47 -5.66 16 23 C -0.12 -3.48 8.60 71.98 0.62 -2.86 16 24 C -0.22 -8.93 5.44 71.98 0.39 -8.54 16 25 H 0.10 2.09 7.84 -2.91 -0.02 2.06 16 26 H 0.12 1.96 8.06 -2.91 -0.02 1.93 16 27 H 0.12 2.52 8.06 -2.91 -0.02 2.49 16 28 H 0.07 2.40 7.75 -2.39 -0.02 2.38 16 29 H 0.10 2.54 5.01 -2.38 -0.01 2.53 16 30 H 0.04 1.81 7.13 -2.39 -0.02 1.79 16 31 H 0.02 0.92 6.92 -2.39 -0.02 0.90 16 32 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 34 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.09 2.71 4.18 -2.38 -0.01 2.70 16 36 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.07 2.01 7.76 -2.39 -0.02 1.99 16 38 H 0.03 1.17 8.13 -2.39 -0.02 1.15 16 39 H 0.09 3.71 3.28 -2.39 -0.01 3.70 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.05 1.41 8.12 -2.39 -0.02 1.39 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 5.36 2.42 -20.61 -0.05 5.31 16 44 H 0.03 1.40 7.78 -2.39 -0.02 1.38 16 45 H 0.08 2.95 3.41 -2.39 -0.01 2.94 16 Total: -1.00 -68.63 327.52 1.97 -66.66 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.88 Total: 30.38 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 5.44 Total: -16.33 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -6.20 Total: -100.97 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.03 Total: -25.82 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -68.63 1.97 -66.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897824155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.631 kcal (2) G-P(sol) polarization free energy of solvation -68.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds