Wall clock time and date at job start Tue Mar 31 2020 02:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 C 1.50706 * 109.47171 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99870 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00260 * 180.02562 * 4 3 2 7 7 C 1.49722 * 122.75795 * 179.97438 * 6 4 3 8 8 C 1.53169 * 105.59629 * 111.58414 * 7 6 4 9 9 C 1.50963 * 111.95689 * 99.83645 * 8 7 6 10 10 H 1.08998 * 109.52589 * 58.24254 * 9 8 7 11 11 C 1.53585 * 111.30629 * 178.50494 * 9 8 7 12 12 N 1.47173 * 105.65486 * 150.28890 * 11 9 8 13 13 C 1.36939 * 126.10240 * 149.71783 * 12 11 9 14 14 H 1.07999 * 119.99691 * 350.01297 * 13 12 11 15 15 C 1.38805 * 119.99763 * 170.01166 * 13 12 11 16 16 N 1.31619 * 120.00370 * 350.59075 * 15 13 12 17 17 Si 1.86801 * 119.99763 * 170.58705 * 15 13 12 18 18 H 1.48492 * 109.47156 * 60.00279 * 17 15 13 19 19 H 1.48509 * 109.47280 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47112 * 300.00143 * 17 15 13 21 21 C 1.46778 * 107.79668 * 329.74010 * 12 11 9 22 22 C 1.53835 * 107.90952 * 20.29401 * 21 12 11 23 23 H 1.09004 * 111.55000 * 118.11851 * 22 21 12 24 24 C 1.51865 * 109.22885 * 241.12941 * 22 21 12 25 25 C 1.43635 * 122.75253 * 359.70057 * 6 4 3 26 26 H 1.09001 * 109.47277 * 59.99371 * 1 2 3 27 27 H 1.09000 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47138 * 299.99499 * 1 2 3 29 29 H 1.09003 * 109.47273 * 240.00016 * 2 1 3 30 30 H 1.09003 * 109.47661 * 120.00262 * 2 1 3 31 31 H 1.09000 * 109.47401 * 299.99926 * 3 2 1 32 32 H 1.09001 * 109.47093 * 60.00839 * 3 2 1 33 33 H 1.08996 * 110.21266 * 230.60496 * 7 6 4 34 34 H 1.08998 * 110.21183 * 352.43102 * 7 6 4 35 35 H 1.09008 * 108.98257 * 220.46764 * 8 7 6 36 36 H 1.08994 * 108.98734 * 339.19357 * 8 7 6 37 37 H 1.09002 * 110.21049 * 269.33173 * 11 9 8 38 38 H 1.09000 * 110.21302 * 31.24087 * 11 9 8 39 39 H 0.97005 * 120.00228 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.78114 * 260.68039 * 21 12 11 41 41 H 1.09001 * 109.80101 * 139.91577 * 21 12 11 42 42 H 1.09001 * 108.91835 * 320.65309 * 24 22 21 43 43 H 1.08999 * 108.91167 * 79.30138 * 24 22 21 44 44 H 1.08998 * 108.43077 * 359.36448 * 25 6 4 45 45 H 1.09004 * 108.42561 * 116.62930 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2209 2.6097 -0.0002 7 6 5.7164 2.6817 -0.0002 8 6 6.1016 3.2441 -1.3719 9 6 6.4131 4.7199 -1.3096 10 1 7.2255 4.8913 -0.6034 11 6 6.8330 5.2601 -2.6847 12 7 6.4122 6.6703 -2.7027 13 6 7.0238 7.6862 -3.3876 14 1 7.9854 7.5225 -3.8512 15 6 6.4079 8.9262 -3.4860 16 7 5.1630 9.0763 -3.0860 17 14 7.3459 10.3820 -4.1862 18 1 7.7645 10.0780 -5.5780 19 1 6.4714 11.5823 -4.1828 20 1 8.5475 10.6433 -3.3536 21 6 5.2202 6.7937 -1.8551 22 6 5.1860 5.5822 -0.9077 23 1 5.2488 5.8886 0.1365 24 6 3.9206 4.7826 -1.1637 25 6 3.5633 3.8867 -0.0055 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 6.0614 3.3479 0.7904 34 1 6.1413 1.6870 0.1341 35 1 6.9788 2.7118 -1.7398 36 1 5.2757 3.0850 -2.0651 37 1 7.9141 5.1883 -2.8034 38 1 6.3288 4.7065 -3.4768 39 1 4.7326 9.9430 -3.1544 40 1 4.3248 6.8012 -2.4766 41 1 5.2737 7.7146 -1.2744 42 1 3.0967 5.4730 -1.3440 43 1 4.0655 4.1663 -2.0510 44 1 2.4864 3.7197 -0.0211 45 1 3.8139 4.4071 0.9190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946449029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:05 Heat of formation + Delta-G solvation = -21.901618 kcal Electronic energy + Delta-G solvation = -22958.644154 eV Core-core repulsion = 19783.171792 eV Total energy + Delta-G solvation = -3175.472362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.38115 -38.61638 -35.94411 -34.56462 -33.16817 -32.20791 -30.82275 -28.55554 -27.56985 -26.83044 -24.30764 -22.92644 -22.78378 -21.55414 -20.27407 -19.18308 -18.25931 -17.26475 -16.80100 -16.07350 -15.93533 -14.94632 -14.85337 -14.53133 -14.02941 -13.87375 -13.50856 -13.29405 -13.06281 -12.86788 -12.55302 -12.42940 -12.13140 -11.96279 -11.68136 -11.56060 -11.38736 -11.24168 -10.99515 -10.91669 -10.81363 -10.75367 -10.66161 -10.09773 -9.88927 -9.86578 -9.68334 -9.57929 -9.54634 -8.62399 -8.53392 -6.81308 -5.75143 -3.06874 2.63087 2.99368 3.39781 3.44453 3.45453 4.48854 4.51754 4.68681 4.81930 4.85058 5.03702 5.16440 5.19980 5.27391 5.30150 5.31484 5.42075 5.44800 5.51976 5.52685 5.60741 5.72992 5.80813 5.82549 5.90869 5.96882 6.05594 6.10961 6.13584 6.18490 6.25067 6.32056 6.48283 6.53895 6.62915 6.70609 6.83639 7.03819 7.50546 7.55456 7.61330 7.78346 8.17335 8.26984 9.20601 9.82044 10.51616 11.38280 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034857 B = 0.003651 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.094613 B = 7667.632138 C = 8158.524553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.520 3.480 5 O -0.549 6.549 6 N -0.610 5.610 7 C 0.114 3.886 8 C -0.126 4.126 9 C -0.098 4.098 10 H 0.063 0.937 11 C 0.139 3.861 12 N -0.599 5.599 13 C -0.230 4.230 14 H 0.075 0.925 15 C -0.007 4.007 16 N -0.918 5.918 17 Si 0.910 3.090 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.179 3.821 22 C -0.103 4.103 23 H 0.067 0.933 24 C -0.130 4.130 25 C 0.107 3.893 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.014 0.986 39 H 0.253 0.747 40 H 0.031 0.969 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 -13.395 8.199 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.180 4.180 4 C 0.309 3.691 5 O -0.427 6.427 6 N -0.343 5.343 7 C -0.007 4.007 8 C -0.164 4.164 9 C -0.118 4.118 10 H 0.081 0.919 11 C 0.013 3.987 12 N -0.324 5.324 13 C -0.358 4.358 14 H 0.093 0.907 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.740 3.260 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.053 3.947 22 C -0.123 4.123 23 H 0.085 0.915 24 C -0.168 4.168 25 C -0.018 4.018 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.827 -13.728 8.131 17.355 hybrid contribution 0.443 1.086 -0.445 1.255 sum -6.384 -12.642 7.686 16.113 Atomic orbital electron populations 1.21797 0.95543 1.01843 1.01845 1.21280 0.95174 0.94792 1.03430 1.21746 0.91965 0.99954 1.04360 1.20630 0.90135 0.82762 0.75594 1.90671 1.70541 1.30869 1.50589 1.48157 1.07781 1.05709 1.72687 1.22297 0.78648 1.01868 0.97883 1.21695 1.01963 0.95908 0.96854 1.21800 0.97885 0.92851 0.99267 0.91880 1.21275 0.97191 0.86939 0.93337 1.44337 1.31477 1.02199 1.54395 1.18991 1.00216 0.89413 1.27189 0.90681 1.24810 0.95958 0.98266 1.01298 1.69953 1.10585 1.23207 1.52780 0.86231 0.78790 0.82159 0.78778 1.21113 1.21604 1.21196 1.21062 0.89845 0.93222 0.90531 1.22238 0.92968 0.97051 1.00026 0.91450 1.21511 0.99052 0.98112 0.98108 1.20615 0.97099 0.84272 0.99766 0.92604 0.92502 0.92713 0.91291 0.91390 0.88813 0.89014 0.90505 0.89556 0.91745 0.90797 0.94262 0.96856 0.93715 0.95126 0.92513 0.90595 0.91085 0.90952 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.15 0.37 -0.74 16 2 C -0.11 -1.02 5.22 -26.73 -0.14 -1.16 16 3 C -0.14 -1.34 4.11 -27.88 -0.11 -1.45 16 4 C 0.52 6.82 7.76 -10.98 -0.09 6.73 16 5 O -0.55 -9.03 15.68 5.56 0.09 -8.95 16 6 N -0.61 -7.66 2.67 -174.51 -0.47 -8.13 16 7 C 0.11 1.47 6.26 -2.16 -0.01 1.46 16 8 C -0.13 -1.78 4.57 -27.67 -0.13 -1.90 16 9 C -0.10 -1.64 2.61 -90.14 -0.24 -1.87 16 10 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 11 C 0.14 2.87 6.71 -3.37 -0.02 2.85 16 12 N -0.60 -15.18 3.37 -171.60 -0.58 -15.76 16 13 C -0.23 -6.40 10.26 -15.06 -0.15 -6.55 16 14 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 15 C -0.01 -0.19 5.41 -17.43 -0.09 -0.28 16 16 N -0.92 -26.67 10.70 55.49 0.59 -26.08 16 17 Si 0.91 21.97 29.56 -169.99 -5.03 16.94 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.18 4.15 4.99 -3.46 -0.02 4.13 16 22 C -0.10 -1.77 3.14 -89.56 -0.28 -2.05 16 23 H 0.07 1.09 7.76 -51.93 -0.40 0.69 16 24 C -0.13 -1.85 4.51 -28.45 -0.13 -1.98 16 25 C 0.11 1.22 5.61 -6.70 -0.04 1.18 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 29 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.09 0.80 7.85 -51.93 -0.41 0.40 16 32 H 0.09 0.72 7.90 -51.93 -0.41 0.31 16 33 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 34 H 0.09 1.15 7.31 -51.93 -0.38 0.77 16 35 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 36 H 0.07 1.13 5.58 -51.93 -0.29 0.84 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.01 0.29 7.96 -51.93 -0.41 -0.13 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.03 0.78 7.14 -51.93 -0.37 0.41 16 41 H 0.06 1.48 7.13 -51.93 -0.37 1.11 16 42 H 0.08 1.09 7.66 -51.93 -0.40 0.69 16 43 H 0.07 1.10 5.78 -51.93 -0.30 0.80 16 44 H 0.07 0.67 6.01 -51.93 -0.31 0.36 16 45 H 0.06 0.68 7.70 -51.93 -0.40 0.28 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -31.46 339.21 -9.15 -40.61 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.79 Total: -2.11 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.08 Total: -1.64 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.45 Total: -49.96 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.46 -9.15 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946449029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.707 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds