Wall clock time and date at job start Tue Mar 31 2020 02:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 C 1.50706 * 109.47171 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99870 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00260 * 180.02562 * 4 3 2 7 7 C 1.49722 * 122.75795 * 179.97438 * 6 4 3 8 8 C 1.53169 * 105.59629 * 111.58414 * 7 6 4 9 9 C 1.50963 * 111.95689 * 99.83645 * 8 7 6 10 10 H 1.08998 * 109.52589 * 58.24254 * 9 8 7 11 11 C 1.53585 * 111.30629 * 178.50494 * 9 8 7 12 12 N 1.47173 * 105.65486 * 150.28890 * 11 9 8 13 13 C 1.36939 * 126.10240 * 149.71783 * 12 11 9 14 14 H 1.07999 * 119.99691 * 350.01297 * 13 12 11 15 15 C 1.38805 * 119.99763 * 170.01166 * 13 12 11 16 16 N 1.31619 * 120.00370 * 350.59075 * 15 13 12 17 17 Si 1.86801 * 119.99763 * 170.58705 * 15 13 12 18 18 H 1.48492 * 109.47156 * 60.00279 * 17 15 13 19 19 H 1.48509 * 109.47280 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47112 * 300.00143 * 17 15 13 21 21 C 1.46778 * 107.79668 * 329.74010 * 12 11 9 22 22 C 1.53835 * 107.90952 * 20.29401 * 21 12 11 23 23 H 1.09004 * 111.55000 * 118.11851 * 22 21 12 24 24 C 1.51865 * 109.22885 * 241.12941 * 22 21 12 25 25 C 1.43635 * 122.75253 * 359.70057 * 6 4 3 26 26 H 1.09001 * 109.47277 * 59.99371 * 1 2 3 27 27 H 1.09000 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47138 * 299.99499 * 1 2 3 29 29 H 1.09003 * 109.47273 * 240.00016 * 2 1 3 30 30 H 1.09003 * 109.47661 * 120.00262 * 2 1 3 31 31 H 1.09000 * 109.47401 * 299.99926 * 3 2 1 32 32 H 1.09001 * 109.47093 * 60.00839 * 3 2 1 33 33 H 1.08996 * 110.21266 * 230.60496 * 7 6 4 34 34 H 1.08998 * 110.21183 * 352.43102 * 7 6 4 35 35 H 1.09008 * 108.98257 * 220.46764 * 8 7 6 36 36 H 1.08994 * 108.98734 * 339.19357 * 8 7 6 37 37 H 1.09002 * 110.21049 * 269.33173 * 11 9 8 38 38 H 1.09000 * 110.21302 * 31.24087 * 11 9 8 39 39 H 0.97005 * 120.00228 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.78114 * 260.68039 * 21 12 11 41 41 H 1.09001 * 109.80101 * 139.91577 * 21 12 11 42 42 H 1.09001 * 108.91835 * 320.65309 * 24 22 21 43 43 H 1.08999 * 108.91167 * 79.30138 * 24 22 21 44 44 H 1.08998 * 108.43077 * 359.36448 * 25 6 4 45 45 H 1.09004 * 108.42561 * 116.62930 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2209 2.6097 -0.0002 7 6 5.7164 2.6817 -0.0002 8 6 6.1016 3.2441 -1.3719 9 6 6.4131 4.7199 -1.3096 10 1 7.2255 4.8913 -0.6034 11 6 6.8330 5.2601 -2.6847 12 7 6.4122 6.6703 -2.7027 13 6 7.0238 7.6862 -3.3876 14 1 7.9854 7.5225 -3.8512 15 6 6.4079 8.9262 -3.4860 16 7 5.1630 9.0763 -3.0860 17 14 7.3459 10.3820 -4.1862 18 1 7.7645 10.0780 -5.5780 19 1 6.4714 11.5823 -4.1828 20 1 8.5475 10.6433 -3.3536 21 6 5.2202 6.7937 -1.8551 22 6 5.1860 5.5822 -0.9077 23 1 5.2488 5.8886 0.1365 24 6 3.9206 4.7826 -1.1637 25 6 3.5633 3.8867 -0.0055 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 6.0614 3.3479 0.7904 34 1 6.1413 1.6870 0.1341 35 1 6.9788 2.7118 -1.7398 36 1 5.2757 3.0850 -2.0651 37 1 7.9141 5.1883 -2.8034 38 1 6.3288 4.7065 -3.4768 39 1 4.7326 9.9430 -3.1544 40 1 4.3248 6.8012 -2.4766 41 1 5.2737 7.7146 -1.2744 42 1 3.0967 5.4730 -1.3440 43 1 4.0655 4.1663 -2.0510 44 1 2.4864 3.7197 -0.0211 45 1 3.8139 4.4071 0.9190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946449029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:05 Heat of formation + Delta-G solvation = -39.941335 kcal Electronic energy + Delta-G solvation = -22959.426415 eV Core-core repulsion = 19783.171792 eV Total energy + Delta-G solvation = -3176.254623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49727 -39.93624 -37.31952 -35.34146 -34.85258 -33.42957 -32.58061 -29.63818 -29.06827 -28.10343 -25.99556 -24.19524 -23.89781 -22.38271 -22.10198 -20.17028 -19.67501 -18.85647 -18.12075 -17.04719 -16.95684 -16.70389 -16.25985 -15.87927 -15.30228 -15.03374 -14.80283 -14.46570 -14.43966 -13.96265 -13.80058 -13.76004 -13.27814 -13.11988 -12.99611 -12.81243 -12.71327 -12.63120 -12.41959 -12.27708 -12.09767 -11.96573 -11.84152 -11.73501 -11.60149 -11.32082 -11.16657 -10.97842 -10.75176 -10.62631 -9.62466 -8.86888 -7.88116 -5.22054 1.45470 1.48408 1.54848 1.64963 2.04378 2.49568 3.30140 3.60583 3.67142 3.77501 3.89038 3.97831 4.03134 4.07777 4.14209 4.18761 4.30173 4.50885 4.58959 4.63719 4.68819 4.71690 4.73334 4.77945 4.81923 4.90324 4.90819 5.01743 5.03252 5.10163 5.17770 5.25329 5.26915 5.30400 5.33012 5.44892 5.48756 5.54069 5.58977 5.77919 5.80820 6.22212 6.57604 7.10579 7.19084 7.78384 8.46153 9.23748 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034857 B = 0.003651 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.094613 B = 7667.632138 C = 8158.524553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.515 3.485 5 O -0.588 6.588 6 N -0.609 5.609 7 C 0.117 3.883 8 C -0.115 4.115 9 C -0.083 4.083 10 H 0.070 0.930 11 C 0.133 3.867 12 N -0.623 5.623 13 C -0.248 4.248 14 H 0.077 0.923 15 C -0.061 4.061 16 N -0.945 5.945 17 Si 0.976 3.024 18 H -0.278 1.278 19 H -0.292 1.292 20 H -0.278 1.278 21 C 0.187 3.813 22 C -0.092 4.092 23 H 0.085 0.915 24 C -0.120 4.120 25 C 0.111 3.889 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.008 0.992 39 H 0.248 0.752 40 H 0.000 1.000 41 H 0.019 0.981 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.103 0.897 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.630 -14.001 9.348 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.175 4.175 4 C 0.305 3.695 5 O -0.469 6.469 6 N -0.342 5.342 7 C -0.005 4.005 8 C -0.153 4.153 9 C -0.102 4.102 10 H 0.089 0.911 11 C 0.008 3.992 12 N -0.348 5.348 13 C -0.377 4.377 14 H 0.094 0.906 15 C -0.255 4.255 16 N -0.593 5.593 17 Si 0.804 3.196 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.062 3.938 22 C -0.111 4.111 23 H 0.103 0.897 24 C -0.158 4.158 25 C -0.013 4.013 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.057 0.943 40 H 0.018 0.982 41 H 0.037 0.963 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.121 0.879 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.378 -14.353 9.283 18.617 hybrid contribution 0.655 1.262 -0.865 1.665 sum -6.724 -13.090 8.417 16.953 Atomic orbital electron populations 1.21762 0.93689 1.02399 1.02684 1.21252 0.96698 0.94612 1.02029 1.21818 0.89167 1.00362 1.06191 1.21290 0.91549 0.82129 0.74492 1.90656 1.71604 1.32233 1.52380 1.48224 1.07657 1.06085 1.72194 1.22243 0.79231 1.01855 0.97150 1.21571 1.02003 0.93939 0.97786 1.21672 0.97728 0.94177 0.96638 0.91110 1.21461 0.97236 0.84851 0.95653 1.44677 1.31988 1.03668 1.54511 1.19371 1.00532 0.90561 1.27278 0.90561 1.25637 0.96877 1.00792 1.02204 1.70152 1.11903 1.23310 1.53967 0.85195 0.77512 0.78570 0.78300 1.20354 1.21816 1.20420 1.20894 0.88054 0.94488 0.90377 1.22116 0.94920 0.94863 0.99232 0.89680 1.21379 0.97362 0.98045 0.99047 1.20589 0.98784 0.83240 0.98674 0.92038 0.92204 0.91528 0.93103 0.92516 0.87361 0.86448 0.89021 0.89919 0.90933 0.91824 0.94076 0.97373 0.94271 0.98227 0.96262 0.90730 0.92363 0.87924 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.11 -1.84 5.22 30.59 0.16 -1.68 16 3 C -0.14 -2.18 4.11 29.85 0.12 -2.06 16 4 C 0.51 12.37 7.76 87.66 0.68 13.05 16 5 O -0.59 -18.77 15.68 -3.04 -0.05 -18.81 16 6 N -0.61 -13.62 2.67 -824.42 -2.20 -15.83 16 7 C 0.12 2.72 6.26 85.81 0.54 3.25 16 8 C -0.11 -3.03 4.57 29.99 0.14 -2.90 16 9 C -0.08 -2.64 2.61 -10.48 -0.03 -2.67 16 10 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 11 C 0.13 5.52 6.71 86.45 0.58 6.10 16 12 N -0.62 -32.23 3.37 -696.83 -2.35 -34.58 16 13 C -0.25 -14.10 10.26 84.03 0.86 -13.24 16 14 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 15 C -0.06 -3.50 5.41 84.86 0.46 -3.04 16 16 N -0.95 -56.49 10.70 21.65 0.23 -56.26 16 17 Si 0.98 45.71 29.56 68.60 2.03 47.74 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 C 0.19 8.92 4.99 86.61 0.43 9.35 16 22 C -0.09 -3.06 3.14 -10.11 -0.03 -3.09 16 23 H 0.08 2.57 7.76 -2.38 -0.02 2.55 16 24 C -0.12 -3.22 4.51 29.48 0.13 -3.09 16 25 C 0.11 2.15 5.61 86.17 0.48 2.64 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 30 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.11 1.47 7.85 -2.39 -0.02 1.45 16 32 H 0.12 1.32 7.90 -2.39 -0.02 1.31 16 33 H 0.09 1.89 7.84 -2.39 -0.02 1.87 16 34 H 0.08 2.04 7.31 -2.39 -0.02 2.02 16 35 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.06 1.85 5.58 -2.39 -0.01 1.84 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.01 0.36 7.96 -2.39 -0.02 0.34 16 39 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 40 H 0.00 -0.01 7.14 -2.39 -0.02 -0.03 16 41 H 0.02 1.03 7.13 -2.39 -0.02 1.02 16 42 H 0.07 2.05 7.66 -2.39 -0.02 2.03 16 43 H 0.06 1.73 5.78 -2.39 -0.01 1.72 16 44 H 0.10 1.45 6.01 -2.39 -0.01 1.43 16 45 H 0.08 1.35 7.70 -2.38 -0.02 1.33 16 Total: -1.00 -70.43 339.21 3.85 -66.58 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.95 Total: 9.61 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 5.24 Total: 1.55 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -4.32 Total: -106.67 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.81 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -70.43 3.85 -66.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946449029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.639 kcal (2) G-P(sol) polarization free energy of solvation -70.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds