Wall clock time and date at job start Tue Mar 31 2020 01:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46711 * 2 1 4 4 C 1.53002 * 109.46711 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55229 * 29.27780 * 4 3 2 6 6 C 1.53001 * 117.49788 * 243.60882 * 4 3 2 7 7 C 1.52993 * 59.99864 * 252.51017 * 6 4 3 8 8 H 1.08996 * 117.49886 * 107.49374 * 7 6 4 9 9 C 1.50704 * 117.49809 * 252.50603 * 7 6 4 10 10 O 1.21287 * 119.99548 * 68.62854 * 9 7 6 11 11 N 1.34777 * 120.00082 * 248.62066 * 9 7 6 12 12 C 1.46500 * 119.99582 * 180.02562 * 11 9 7 13 13 H 1.09001 * 109.47759 * 35.00285 * 12 11 9 14 14 C 1.53004 * 109.47163 * 275.00016 * 12 11 9 15 15 C 1.53005 * 109.47193 * 155.00588 * 12 11 9 16 16 C 1.53948 * 113.73739 * 276.67577 * 15 12 11 17 17 N 1.47581 * 86.11397 * 222.04519 * 16 15 12 18 18 C 1.36937 * 134.49399 * 204.64145 * 17 16 15 19 19 H 1.08002 * 119.99970 * 173.47412 * 18 17 16 20 20 C 1.38814 * 119.99789 * 353.48485 * 18 17 16 21 21 N 1.31620 * 120.00186 * 5.05867 * 20 18 17 22 22 Si 1.86794 * 119.99969 * 185.06701 * 20 18 17 23 23 H 1.48497 * 109.47368 * 94.98267 * 22 20 18 24 24 H 1.48498 * 109.47246 * 214.98436 * 22 20 18 25 25 H 1.48504 * 109.47329 * 334.98105 * 22 20 18 26 26 C 1.47582 * 91.01715 * 24.63996 * 17 16 15 27 27 H 1.08999 * 109.47416 * 60.00051 * 1 2 3 28 28 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47102 * 299.99713 * 1 2 3 30 30 H 1.08995 * 109.46925 * 119.99965 * 2 1 3 31 31 H 1.09005 * 109.46965 * 240.00010 * 2 1 3 32 32 H 1.08995 * 109.47398 * 299.99675 * 3 2 1 33 33 H 1.08997 * 109.47103 * 60.00288 * 3 2 1 34 34 H 1.09001 * 117.49957 * 0.02562 * 6 4 3 35 35 H 1.09005 * 117.49822 * 145.00036 * 6 4 3 36 36 H 0.96994 * 120.00429 * 0.02562 * 11 9 7 37 37 H 1.09002 * 109.47419 * 300.00394 * 14 12 11 38 38 H 1.09009 * 109.46970 * 60.00476 * 14 12 11 39 39 H 1.08995 * 109.47184 * 179.97438 * 14 12 11 40 40 H 1.09001 * 112.93894 * 48.39974 * 15 12 11 41 41 H 1.09002 * 113.76723 * 336.34538 * 16 15 12 42 42 H 1.08995 * 113.77204 * 107.74607 * 16 15 12 43 43 H 0.97000 * 120.00045 * 180.02562 * 21 20 18 44 44 H 1.09006 * 113.77288 * 221.06372 * 26 17 16 45 45 H 1.08993 * 113.77201 * 89.65678 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 4.0399 0.5848 -0.4819 6 6 4.2769 2.0456 1.2149 7 6 4.2763 2.7945 -0.1193 8 1 3.6511 3.6839 -0.1969 9 6 5.5689 2.8387 -0.8929 10 8 6.0111 1.8262 -1.3931 11 7 6.2332 4.0035 -1.0291 12 6 7.4894 4.0465 -1.7816 13 1 7.4385 3.3449 -2.6142 14 6 8.6491 3.6618 -0.8607 15 6 7.7134 5.4612 -2.3197 16 6 6.9738 5.7465 -3.6394 17 7 8.2113 6.4261 -4.0693 18 6 8.4999 7.4113 -4.9756 19 1 9.4995 7.8164 -5.0328 20 6 7.5078 7.8895 -5.8205 21 7 6.2682 7.4685 -5.6844 22 14 7.9320 9.1301 -7.1509 23 1 8.1842 8.4182 -8.4295 24 1 6.8000 10.0753 -7.3255 25 1 9.1492 9.8834 -6.7554 26 6 9.0128 5.6176 -3.1303 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.6520 2.4420 2.0152 35 1 5.2119 1.5847 1.5332 36 1 5.8796 4.8132 -0.6288 37 1 8.7001 4.3634 -0.0280 38 1 8.4896 2.6539 -0.4773 39 1 9.5836 3.6934 -1.4207 40 1 7.5738 6.2313 -1.5611 41 1 6.7416 4.8508 -4.2155 42 1 6.1206 6.4159 -3.5291 43 1 5.5750 7.8024 -6.2751 44 1 9.7875 6.1839 -2.6133 45 1 9.3795 4.6839 -3.5567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970393974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:48 Heat of formation + Delta-G solvation = 17.089100 kcal Electronic energy + Delta-G solvation = -21744.118120 eV Core-core repulsion = 18570.336522 eV Total energy + Delta-G solvation = -3173.781598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.03239 -38.39217 -37.12034 -34.71509 -34.02202 -32.18151 -30.43317 -27.69468 -27.49714 -25.12591 -24.30385 -23.51758 -22.17001 -21.14844 -20.56304 -20.07649 -18.89075 -17.10299 -16.72676 -16.08104 -15.43832 -15.00493 -14.87674 -14.55622 -14.35543 -13.82926 -13.60337 -13.41771 -13.04869 -12.93900 -12.48732 -12.36887 -12.21151 -12.05154 -11.65068 -11.51857 -11.33602 -11.28293 -11.22396 -11.03769 -10.89663 -10.72634 -10.36826 -10.32292 -10.12926 -9.94512 -9.75001 -9.58243 -9.35721 -8.78002 -8.73868 -6.84814 -5.76934 -3.08156 2.64356 3.30364 3.39759 3.44826 3.46755 3.75619 4.43564 4.46564 4.63221 4.69511 4.86930 4.94730 5.02581 5.10849 5.20344 5.29280 5.31320 5.32232 5.51293 5.53467 5.55821 5.59733 5.65393 5.69149 5.80959 5.83756 5.84261 5.96619 6.01086 6.04753 6.06519 6.22978 6.27561 6.38707 6.43233 6.62066 6.70342 6.85792 7.25089 7.37300 7.58067 7.75808 7.99228 8.45265 9.05823 9.71893 10.62503 11.40707 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.003174 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.882219 B = 8819.454584 C = 9862.216284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.118 4.118 5 H 0.117 0.883 6 C -0.150 4.150 7 C -0.189 4.189 8 H 0.123 0.877 9 C 0.542 3.458 10 O -0.547 6.547 11 N -0.714 5.714 12 C 0.150 3.850 13 H 0.086 0.914 14 C -0.157 4.157 15 C -0.147 4.147 16 C 0.174 3.826 17 N -0.613 5.613 18 C -0.224 4.224 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.129 3.871 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.400 0.600 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.253 0.747 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 -11.178 16.008 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.137 4.137 5 H 0.135 0.865 6 C -0.188 4.188 7 C -0.210 4.210 8 H 0.141 0.859 9 C 0.328 3.672 10 O -0.425 6.425 11 N -0.363 5.363 12 C 0.045 3.955 13 H 0.104 0.896 14 C -0.216 4.216 15 C -0.167 4.167 16 C 0.049 3.951 17 N -0.339 5.339 18 C -0.351 4.351 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.003 3.997 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.234 0.766 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.969 -11.643 15.370 20.503 hybrid contribution 0.052 1.156 -0.734 1.370 sum -6.918 -10.487 14.636 19.289 Atomic orbital electron populations 1.21784 0.95931 1.01562 1.01809 1.21500 0.95601 0.96574 1.02293 1.21249 0.92012 0.97302 1.02265 1.22425 0.94592 0.95673 1.00970 0.86486 1.23072 1.02992 1.02359 0.90352 1.22333 0.98083 0.98838 1.01752 0.85926 1.19604 0.84375 0.83452 0.79762 1.90674 1.68895 1.34113 1.48789 1.46025 1.24666 1.10514 1.55095 1.21090 0.82181 0.98367 0.93839 0.89552 1.22128 0.98565 1.00999 0.99888 1.23831 1.00634 0.93671 0.98553 1.22193 0.91675 0.94431 0.86841 1.45947 1.03454 1.38930 1.45585 1.19030 0.96013 1.09939 1.10153 0.90232 1.24829 0.95649 1.00599 0.99387 1.69838 0.99812 1.46940 1.39998 0.86135 0.77240 0.80425 0.82207 1.21629 1.21721 1.20558 1.22507 0.93185 0.94108 0.89938 0.92660 0.92821 0.92841 0.91917 0.91753 0.91248 0.91702 0.88014 0.88467 0.76634 0.92773 0.92902 0.91456 0.89445 0.95505 0.91496 0.93668 0.93808 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.95 5.89 -26.73 -0.16 -1.10 16 3 C -0.09 -0.76 5.50 -26.73 -0.15 -0.91 16 4 C -0.12 -1.21 5.25 -90.62 -0.48 -1.68 16 5 H 0.12 1.42 7.60 -51.93 -0.39 1.02 16 6 C -0.15 -1.36 9.88 -26.73 -0.26 -1.63 16 7 C -0.19 -2.08 5.91 -91.78 -0.54 -2.62 16 8 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 9 C 0.54 7.96 7.58 -10.98 -0.08 7.88 16 10 O -0.55 -10.05 15.92 5.55 0.09 -9.96 16 11 N -0.71 -9.93 5.08 -53.80 -0.27 -10.20 16 12 C 0.15 2.37 2.42 -67.93 -0.16 2.21 16 13 H 0.09 1.60 7.37 -51.93 -0.38 1.22 16 14 C -0.16 -2.16 9.29 37.16 0.35 -1.81 16 15 C -0.15 -2.66 3.50 -89.69 -0.31 -2.97 16 16 C 0.17 4.11 6.98 -2.97 -0.02 4.09 16 17 N -0.61 -15.94 3.70 -177.92 -0.66 -16.59 16 18 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.59 11.51 55.49 0.64 -26.95 16 22 Si 0.91 22.35 29.56 -169.99 -5.02 17.33 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.13 2.63 7.56 -2.97 -0.02 2.61 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.47 7.88 -51.93 -0.41 0.06 16 34 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.40 4.66 8.60 -40.82 -0.35 4.31 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 39 H 0.07 0.89 7.43 -51.93 -0.39 0.51 16 40 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.03 0.68 7.96 -51.93 -0.41 0.27 16 42 H 0.07 1.73 7.35 -51.93 -0.38 1.35 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 LS Contribution 367.07 15.07 5.53 5.53 Total: -1.00 -32.94 367.07 -9.60 -42.54 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.17 Total: 1.78 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.73 Total: -3.48 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.29 Total: -53.74 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.94 -9.60 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970393974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.630 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds