Wall clock time and date at job start Tue Mar 31 2020 01:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46711 * 2 1 4 4 C 1.53002 * 109.46711 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55229 * 29.27780 * 4 3 2 6 6 C 1.53001 * 117.49788 * 243.60882 * 4 3 2 7 7 C 1.52993 * 59.99864 * 252.51017 * 6 4 3 8 8 H 1.08996 * 117.49886 * 107.49374 * 7 6 4 9 9 C 1.50704 * 117.49809 * 252.50603 * 7 6 4 10 10 O 1.21287 * 119.99548 * 68.62854 * 9 7 6 11 11 N 1.34777 * 120.00082 * 248.62066 * 9 7 6 12 12 C 1.46500 * 119.99582 * 180.02562 * 11 9 7 13 13 H 1.09001 * 109.47759 * 35.00285 * 12 11 9 14 14 C 1.53004 * 109.47163 * 275.00016 * 12 11 9 15 15 C 1.53005 * 109.47193 * 155.00588 * 12 11 9 16 16 C 1.53948 * 113.73739 * 276.67577 * 15 12 11 17 17 N 1.47581 * 86.11397 * 222.04519 * 16 15 12 18 18 C 1.36937 * 134.49399 * 204.64145 * 17 16 15 19 19 H 1.08002 * 119.99970 * 173.47412 * 18 17 16 20 20 C 1.38814 * 119.99789 * 353.48485 * 18 17 16 21 21 N 1.31620 * 120.00186 * 5.05867 * 20 18 17 22 22 Si 1.86794 * 119.99969 * 185.06701 * 20 18 17 23 23 H 1.48497 * 109.47368 * 94.98267 * 22 20 18 24 24 H 1.48498 * 109.47246 * 214.98436 * 22 20 18 25 25 H 1.48504 * 109.47329 * 334.98105 * 22 20 18 26 26 C 1.47582 * 91.01715 * 24.63996 * 17 16 15 27 27 H 1.08999 * 109.47416 * 60.00051 * 1 2 3 28 28 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47102 * 299.99713 * 1 2 3 30 30 H 1.08995 * 109.46925 * 119.99965 * 2 1 3 31 31 H 1.09005 * 109.46965 * 240.00010 * 2 1 3 32 32 H 1.08995 * 109.47398 * 299.99675 * 3 2 1 33 33 H 1.08997 * 109.47103 * 60.00288 * 3 2 1 34 34 H 1.09001 * 117.49957 * 0.02562 * 6 4 3 35 35 H 1.09005 * 117.49822 * 145.00036 * 6 4 3 36 36 H 0.96994 * 120.00429 * 0.02562 * 11 9 7 37 37 H 1.09002 * 109.47419 * 300.00394 * 14 12 11 38 38 H 1.09009 * 109.46970 * 60.00476 * 14 12 11 39 39 H 1.08995 * 109.47184 * 179.97438 * 14 12 11 40 40 H 1.09001 * 112.93894 * 48.39974 * 15 12 11 41 41 H 1.09002 * 113.76723 * 336.34538 * 16 15 12 42 42 H 1.08995 * 113.77204 * 107.74607 * 16 15 12 43 43 H 0.97000 * 120.00045 * 180.02562 * 21 20 18 44 44 H 1.09006 * 113.77288 * 221.06372 * 26 17 16 45 45 H 1.08993 * 113.77201 * 89.65678 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 4.0399 0.5848 -0.4819 6 6 4.2769 2.0456 1.2149 7 6 4.2763 2.7945 -0.1193 8 1 3.6511 3.6839 -0.1969 9 6 5.5689 2.8387 -0.8929 10 8 6.0111 1.8262 -1.3931 11 7 6.2332 4.0035 -1.0291 12 6 7.4894 4.0465 -1.7816 13 1 7.4385 3.3449 -2.6142 14 6 8.6491 3.6618 -0.8607 15 6 7.7134 5.4612 -2.3197 16 6 6.9738 5.7465 -3.6394 17 7 8.2113 6.4261 -4.0693 18 6 8.4999 7.4113 -4.9756 19 1 9.4995 7.8164 -5.0328 20 6 7.5078 7.8895 -5.8205 21 7 6.2682 7.4685 -5.6844 22 14 7.9320 9.1301 -7.1509 23 1 8.1842 8.4182 -8.4295 24 1 6.8000 10.0753 -7.3255 25 1 9.1492 9.8834 -6.7554 26 6 9.0128 5.6176 -3.1303 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.6520 2.4420 2.0152 35 1 5.2119 1.5847 1.5332 36 1 5.8796 4.8132 -0.6288 37 1 8.7001 4.3634 -0.0280 38 1 8.4896 2.6539 -0.4773 39 1 9.5836 3.6934 -1.4207 40 1 7.5738 6.2313 -1.5611 41 1 6.7416 4.8508 -4.2155 42 1 6.1206 6.4159 -3.5291 43 1 5.5750 7.8024 -6.2751 44 1 9.7875 6.1839 -2.6133 45 1 9.3795 4.6839 -3.5567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970393974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:48 Heat of formation + Delta-G solvation = -2.966795 kcal Electronic energy + Delta-G solvation = -21744.987808 eV Core-core repulsion = 18570.336522 eV Total energy + Delta-G solvation = -3174.651286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21515 -39.91388 -38.14709 -36.12452 -34.71407 -34.17639 -31.81532 -29.37636 -28.36491 -26.72214 -25.80037 -24.96808 -22.92996 -22.47018 -21.45946 -21.29151 -20.34858 -18.76975 -18.17924 -17.39815 -16.92283 -16.22609 -15.97756 -15.79362 -15.61640 -15.31105 -14.90884 -14.68119 -14.15283 -14.11285 -13.68383 -13.47763 -13.31046 -13.12605 -13.07695 -12.91588 -12.88137 -12.72049 -12.54829 -12.17756 -11.99835 -11.92258 -11.74659 -11.66116 -11.51979 -11.26771 -11.14128 -10.95581 -10.88950 -10.67035 -10.01027 -8.93047 -7.93627 -5.26546 1.43718 1.46293 1.54704 1.55054 2.19570 2.46029 2.89704 3.26713 3.37303 3.61526 3.74797 3.81004 3.90208 3.95729 4.20814 4.26696 4.29354 4.32548 4.40698 4.49853 4.57749 4.66430 4.72777 4.81978 4.84780 4.87460 4.90374 4.96307 4.98898 5.02603 5.09782 5.11957 5.22755 5.23566 5.31747 5.38381 5.42589 5.48488 5.53300 5.56375 5.66512 5.91583 6.63597 6.89873 7.31760 7.58836 8.55446 9.23991 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.003174 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.882219 B = 8819.454584 C = 9862.216284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.125 4.125 5 H 0.091 0.909 6 C -0.126 4.126 7 C -0.198 4.198 8 H 0.143 0.857 9 C 0.536 3.464 10 O -0.591 6.591 11 N -0.707 5.707 12 C 0.158 3.842 13 H 0.054 0.946 14 C -0.148 4.148 15 C -0.108 4.108 16 C 0.171 3.829 17 N -0.645 5.645 18 C -0.236 4.236 19 H 0.086 0.914 20 C -0.070 4.070 21 N -0.953 5.953 22 Si 0.979 3.021 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.264 1.264 26 C 0.129 3.871 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.091 0.909 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.000 1.000 42 H 0.038 0.962 43 H 0.248 0.752 44 H 0.067 0.933 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.990 -10.526 18.152 22.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.122 4.122 4 C -0.144 4.144 5 H 0.109 0.891 6 C -0.164 4.164 7 C -0.219 4.219 8 H 0.161 0.839 9 C 0.324 3.676 10 O -0.472 6.472 11 N -0.357 5.357 12 C 0.053 3.947 13 H 0.072 0.928 14 C -0.206 4.206 15 C -0.128 4.128 16 C 0.045 3.955 17 N -0.371 5.371 18 C -0.365 4.365 19 H 0.104 0.896 20 C -0.263 4.263 21 N -0.602 5.602 22 Si 0.807 3.193 23 H -0.218 1.218 24 H -0.220 1.220 25 H -0.188 1.188 26 C 0.004 3.996 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.109 0.891 36 H 0.250 0.750 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.018 0.982 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.701 -10.981 17.553 21.762 hybrid contribution 0.007 0.894 -1.402 1.662 sum -6.694 -10.088 16.151 20.185 Atomic orbital electron populations 1.21772 0.95065 1.02004 1.02085 1.21496 0.96330 0.96220 1.01957 1.21233 0.90460 0.97735 1.02811 1.22428 0.95743 0.94308 1.01898 0.89065 1.23181 1.02807 1.00389 0.89990 1.22351 0.96463 1.00107 1.02995 0.83922 1.20265 0.85253 0.82731 0.79311 1.90654 1.70239 1.35614 1.50689 1.45943 1.24096 1.11177 1.54531 1.20816 0.84233 0.95817 0.93878 0.92768 1.22034 0.97382 1.01245 0.99930 1.23456 0.97432 0.95566 0.96330 1.22068 0.90934 0.92579 0.89887 1.46384 1.05551 1.39298 1.45905 1.19466 0.96211 1.10402 1.10383 0.89608 1.25705 0.95619 1.03141 1.01800 1.70030 1.00665 1.48640 1.40859 0.85057 0.77320 0.78018 0.78955 1.21781 1.21959 1.18809 1.22696 0.94251 0.93709 0.88942 0.93051 0.92357 0.91871 0.91344 0.93087 0.92014 0.89741 0.84927 0.89059 0.75033 0.90528 0.93376 0.90871 0.87449 0.98183 0.94322 0.94299 0.91525 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.79 5.89 30.59 0.18 -1.61 16 3 C -0.09 -1.30 5.50 30.59 0.17 -1.13 16 4 C -0.12 -2.46 5.25 -10.79 -0.06 -2.51 16 5 H 0.09 2.29 7.60 -2.39 -0.02 2.27 16 6 C -0.13 -1.99 9.88 30.59 0.30 -1.69 16 7 C -0.20 -4.09 5.91 -11.54 -0.07 -4.16 16 8 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 9 C 0.54 15.65 7.58 87.66 0.66 16.31 16 10 O -0.59 -22.33 15.92 -3.05 -0.05 -22.38 16 11 N -0.71 -19.05 5.08 -442.51 -2.25 -21.29 16 12 C 0.16 4.90 2.42 44.99 0.11 5.01 16 13 H 0.05 2.06 7.37 -2.39 -0.02 2.05 16 14 C -0.15 -3.73 9.29 71.98 0.67 -3.07 16 15 C -0.11 -3.81 3.50 -10.13 -0.04 -3.84 16 16 C 0.17 8.30 6.98 86.48 0.60 8.91 16 17 N -0.64 -33.69 3.70 -716.81 -2.65 -36.34 16 18 C -0.24 -13.49 10.70 84.03 0.90 -12.59 16 19 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 21 N -0.95 -58.79 11.51 21.65 0.25 -58.54 16 22 Si 0.98 46.35 29.56 68.60 2.03 48.38 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 26 C 0.13 5.09 7.56 86.48 0.65 5.75 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 0.97 7.88 -2.39 -0.02 0.95 16 34 H 0.13 1.31 8.03 -2.39 -0.02 1.29 16 35 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.41 8.88 8.60 -92.71 -0.80 8.08 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.28 8.14 -2.38 -0.02 1.27 16 39 H 0.07 1.77 7.43 -2.39 -0.02 1.75 16 40 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.00 0.02 7.96 -2.39 -0.02 0.00 16 42 H 0.04 2.07 7.35 -2.39 -0.02 2.05 16 43 H 0.25 14.85 8.31 -92.71 -0.77 14.07 16 44 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 45 H 0.04 1.58 8.06 -2.39 -0.02 1.56 16 Total: -1.00 -73.51 367.07 2.75 -70.76 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.15 Total: 18.78 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 5.27 Total: 0.62 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -4.65 Total: -116.17 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.38 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.51 2.75 -70.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970393974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.793 kcal (2) G-P(sol) polarization free energy of solvation -73.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds