Wall clock time and date at job start Tue Mar 31 2020 01:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 C 1.52993 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.08992 * 115.55308 * 29.27423 * 4 3 2 6 6 C 1.53001 * 117.49544 * 243.60867 * 4 3 2 7 7 C 1.52999 * 60.00268 * 252.50912 * 6 4 3 8 8 H 1.08997 * 117.49577 * 107.48621 * 7 6 4 9 9 C 1.50701 * 117.50315 * 252.51289 * 7 6 4 10 10 O 1.21275 * 119.99967 * 68.61402 * 9 7 6 11 11 N 1.34779 * 119.99736 * 248.62351 * 9 7 6 12 12 C 1.47014 * 125.64851 * 0.02562 * 11 9 7 13 13 C 1.54322 * 107.27082 * 181.02622 * 12 11 9 14 14 C 1.55160 * 102.94163 * 22.19217 * 13 12 11 15 15 H 1.09001 * 111.00524 * 82.61296 * 14 13 12 16 16 N 1.46498 * 111.00344 * 206.42204 * 14 13 12 17 17 C 1.46500 * 120.00096 * 58.55245 * 16 14 13 18 18 C 1.36940 * 120.00272 * 238.54239 * 16 14 13 19 19 H 1.08003 * 119.99507 * 23.80380 * 18 16 14 20 20 C 1.38810 * 120.00107 * 203.79823 * 18 16 14 21 21 N 1.31618 * 120.00026 * 11.00764 * 20 18 16 22 22 Si 1.86803 * 119.99842 * 191.00508 * 20 18 16 23 23 H 1.48496 * 109.47151 * 59.99850 * 22 20 18 24 24 H 1.48497 * 109.47009 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46959 * 300.00095 * 22 20 18 26 26 C 1.47418 * 125.64372 * 179.71497 * 11 9 7 27 27 H 1.08995 * 109.47123 * 59.99871 * 1 2 3 28 28 H 1.08996 * 109.46686 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46885 * 299.99575 * 1 2 3 30 30 H 1.09004 * 109.46885 * 240.00425 * 2 1 3 31 31 H 1.08995 * 109.47123 * 120.00129 * 2 1 3 32 32 H 1.09005 * 109.46800 * 300.00411 * 3 2 1 33 33 H 1.09002 * 109.46688 * 59.99679 * 3 2 1 34 34 H 1.09001 * 117.50233 * 359.97438 * 6 4 3 35 35 H 1.09003 * 117.49990 * 144.99917 * 6 4 3 36 36 H 1.08998 * 109.88661 * 300.44018 * 12 11 9 37 37 H 1.08994 * 109.88548 * 61.60753 * 12 11 9 38 38 H 1.09002 * 110.72664 * 140.55316 * 13 12 11 39 39 H 1.08993 * 110.72253 * 263.65499 * 13 12 11 40 40 H 1.09003 * 109.47532 * 94.80330 * 17 16 14 41 41 H 1.08998 * 109.47125 * 214.81326 * 17 16 14 42 42 H 1.09008 * 109.46706 * 334.80719 * 17 16 14 43 43 H 0.97004 * 119.99557 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.37022 * 274.74133 * 26 11 9 45 45 H 1.09004 * 110.37096 * 37.06948 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0399 0.5849 -0.4818 6 6 4.2769 2.0456 1.2149 7 6 4.2764 2.7945 -0.1193 8 1 3.6511 3.6839 -0.1969 9 6 5.5689 2.8388 -0.8930 10 8 6.0113 1.8263 -1.3930 11 7 6.2333 4.0035 -1.0290 12 6 5.8128 5.2994 -0.4764 13 6 6.8644 6.3438 -0.9065 14 6 7.5181 5.6866 -2.1508 15 1 6.9197 5.8618 -3.0449 16 7 8.8897 6.1660 -2.3382 17 6 9.8818 5.9811 -1.2762 18 6 9.2445 6.7868 -3.5061 19 1 8.4909 7.2658 -4.1136 20 6 10.5728 6.8004 -3.9091 21 7 11.4549 6.0414 -3.2942 22 14 11.1082 7.8961 -5.3242 23 1 10.8204 9.3137 -4.9889 24 1 12.5652 7.7278 -5.5566 25 1 10.3645 7.5171 -6.5524 26 6 7.5053 4.1877 -1.7510 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.6520 2.4428 2.0148 35 1 5.2119 1.5847 1.5333 36 1 4.8353 5.5723 -0.8739 37 1 5.7703 5.2424 0.6112 38 1 6.3855 7.2855 -1.1746 39 1 7.6001 6.4979 -0.1172 40 1 10.4487 5.0691 -1.4633 41 1 10.5603 6.8340 -1.2604 42 1 9.3743 5.9027 -0.3147 43 1 12.3830 6.0508 -3.5761 44 1 8.3483 3.9594 -1.0989 45 1 7.5313 3.5582 -2.6405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972277776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:52 Heat of formation + Delta-G solvation = 0.718075 kcal Electronic energy + Delta-G solvation = -22047.987408 eV Core-core repulsion = 18873.495910 eV Total energy + Delta-G solvation = -3174.491499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.01939 -38.10717 -36.72602 -34.78045 -34.03752 -31.62705 -29.74827 -28.30191 -27.48037 -26.06991 -24.63596 -22.66811 -22.27348 -21.95918 -20.65770 -19.29813 -18.69606 -17.11900 -17.03015 -15.84886 -15.53622 -15.23433 -14.87056 -14.62255 -13.94410 -13.66807 -13.38660 -13.32128 -13.14093 -12.71485 -12.49875 -12.40836 -12.33688 -12.02590 -11.90990 -11.53269 -11.46064 -11.23733 -11.05643 -10.88552 -10.81097 -10.50216 -10.47052 -10.35232 -10.28521 -10.11855 -9.89858 -9.84068 -9.54137 -8.60085 -8.27985 -6.80377 -5.76770 -3.25715 2.67968 3.19442 3.37399 3.42617 3.43442 3.77985 4.36711 4.46331 4.62467 4.68132 4.84491 4.92552 4.97932 5.02926 5.10527 5.29930 5.30280 5.33170 5.48610 5.50306 5.54737 5.57230 5.61134 5.66688 5.79269 5.82596 5.87356 5.90887 5.99500 6.02508 6.02788 6.22623 6.31828 6.39830 6.56753 6.65004 6.78070 6.88254 7.33585 7.70088 7.76933 7.85784 8.34635 8.44451 9.18255 9.80023 10.29236 11.27536 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038126 B = 0.002977 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.239140 B = 9402.847069 C = 9495.179299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.120 4.120 5 H 0.117 0.883 6 C -0.149 4.149 7 C -0.183 4.183 8 H 0.120 0.880 9 C 0.552 3.448 10 O -0.548 6.548 11 N -0.610 5.610 12 C 0.106 3.894 13 C -0.154 4.154 14 C 0.173 3.827 15 H 0.078 0.922 16 N -0.585 5.585 17 C 0.160 3.840 18 C -0.262 4.262 19 H 0.069 0.931 20 C 0.005 3.995 21 N -0.905 5.905 22 Si 0.908 3.092 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.087 3.913 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.044 0.956 42 H 0.001 0.999 43 H 0.254 0.746 44 H 0.067 0.933 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.391 -5.562 10.036 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.139 4.139 5 H 0.135 0.865 6 C -0.187 4.187 7 C -0.204 4.204 8 H 0.138 0.862 9 C 0.340 3.660 10 O -0.426 6.426 11 N -0.344 5.344 12 C -0.017 4.017 13 C -0.195 4.195 14 C 0.063 3.937 15 H 0.096 0.904 16 N -0.305 5.305 17 C 0.015 3.985 18 C -0.391 4.391 19 H 0.087 0.913 20 C -0.194 4.194 21 N -0.549 5.549 22 Si 0.738 3.262 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.208 1.208 26 C -0.037 4.037 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.019 0.981 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.942 -6.156 9.728 21.318 hybrid contribution 0.467 0.685 -0.714 1.094 sum -17.475 -5.470 9.014 20.410 Atomic orbital electron populations 1.21782 0.95943 1.01571 1.01740 1.21506 0.95556 0.96577 1.02373 1.21236 0.92016 0.97287 1.02122 1.22444 0.94521 0.95759 1.01149 0.86485 1.23074 1.03015 1.02250 0.90320 1.22276 0.97812 0.98452 1.01879 0.86183 1.19270 0.84379 0.82076 0.80226 1.90680 1.69009 1.33402 1.49526 1.48447 1.24571 1.07712 1.53643 1.22002 0.98460 0.83403 0.97866 1.23221 0.97639 0.97422 1.01173 1.21505 0.88155 0.89042 0.95045 0.90394 1.43847 1.04861 1.66260 1.15575 1.20821 0.90434 1.00982 0.86216 1.19171 0.92868 1.27693 0.99390 0.91283 1.25100 0.97098 0.98727 0.98463 1.70054 1.02634 1.39453 1.42761 0.86283 0.77444 0.80347 0.82113 1.20984 1.21592 1.20849 1.23134 0.83981 1.00423 0.96176 0.92743 0.92800 0.92832 0.91756 0.91835 0.91423 0.91706 0.87988 0.88393 0.91992 0.92068 0.90629 0.90515 0.94960 0.93730 0.98063 0.93537 0.91438 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.94 5.89 -26.73 -0.16 -1.10 16 3 C -0.09 -0.74 5.49 -26.73 -0.15 -0.89 16 4 C -0.12 -1.30 5.25 -90.62 -0.48 -1.77 16 5 H 0.12 1.50 7.60 -51.93 -0.39 1.10 16 6 C -0.15 -1.51 9.88 -26.73 -0.26 -1.78 16 7 C -0.18 -2.21 5.26 -91.77 -0.48 -2.70 16 8 H 0.12 1.22 7.67 -51.93 -0.40 0.83 16 9 C 0.55 9.29 7.63 -10.98 -0.08 9.20 16 10 O -0.55 -11.33 16.51 5.56 0.09 -11.24 16 11 N -0.61 -10.21 3.32 -170.39 -0.57 -10.78 16 12 C 0.11 1.43 6.31 -3.07 -0.02 1.41 16 13 C -0.15 -2.44 6.48 -24.90 -0.16 -2.60 16 14 C 0.17 3.47 3.56 -65.66 -0.23 3.24 16 15 H 0.08 1.58 7.96 -51.93 -0.41 1.17 16 16 N -0.59 -14.31 2.96 -170.89 -0.51 -14.81 16 17 C 0.16 3.85 7.58 59.85 0.45 4.30 16 18 C -0.26 -7.05 9.61 -15.06 -0.14 -7.20 16 19 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 20 C 0.01 0.14 5.14 -17.43 -0.09 0.05 16 21 N -0.90 -26.17 10.65 55.49 0.59 -25.58 16 22 Si 0.91 21.62 29.57 -169.99 -5.03 16.60 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.09 1.73 6.47 -2.41 -0.02 1.71 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.47 7.88 -51.93 -0.41 0.06 16 34 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.71 7.98 -51.93 -0.41 0.30 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.26 6.37 -51.93 -0.33 0.93 16 40 H 0.03 0.85 7.35 -51.93 -0.38 0.47 16 41 H 0.04 1.15 7.32 -51.93 -0.38 0.77 16 42 H 0.00 0.02 6.34 -51.92 -0.33 -0.31 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.07 1.43 7.06 -51.93 -0.37 1.07 16 45 H 0.07 1.58 8.03 -51.93 -0.42 1.16 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -30.95 357.82 -9.48 -40.42 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.00 Total: -1.25 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.45 Total: 1.24 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.48 Total: -51.17 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.95 -9.48 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972277776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.142 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds