Wall clock time and date at job start Tue Mar 31 2020 01:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 C 1.52993 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.08992 * 115.55308 * 29.27423 * 4 3 2 6 6 C 1.53001 * 117.49544 * 243.60867 * 4 3 2 7 7 C 1.52999 * 60.00268 * 252.50912 * 6 4 3 8 8 H 1.08997 * 117.49577 * 107.48621 * 7 6 4 9 9 C 1.50701 * 117.50315 * 252.51289 * 7 6 4 10 10 O 1.21275 * 119.99967 * 68.61402 * 9 7 6 11 11 N 1.34779 * 119.99736 * 248.62351 * 9 7 6 12 12 C 1.47014 * 125.64851 * 0.02562 * 11 9 7 13 13 C 1.54322 * 107.27082 * 181.02622 * 12 11 9 14 14 C 1.55160 * 102.94163 * 22.19217 * 13 12 11 15 15 H 1.09001 * 111.00524 * 82.61296 * 14 13 12 16 16 N 1.46498 * 111.00344 * 206.42204 * 14 13 12 17 17 C 1.46500 * 120.00096 * 58.55245 * 16 14 13 18 18 C 1.36940 * 120.00272 * 238.54239 * 16 14 13 19 19 H 1.08003 * 119.99507 * 23.80380 * 18 16 14 20 20 C 1.38810 * 120.00107 * 203.79823 * 18 16 14 21 21 N 1.31618 * 120.00026 * 11.00764 * 20 18 16 22 22 Si 1.86803 * 119.99842 * 191.00508 * 20 18 16 23 23 H 1.48496 * 109.47151 * 59.99850 * 22 20 18 24 24 H 1.48497 * 109.47009 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46959 * 300.00095 * 22 20 18 26 26 C 1.47418 * 125.64372 * 179.71497 * 11 9 7 27 27 H 1.08995 * 109.47123 * 59.99871 * 1 2 3 28 28 H 1.08996 * 109.46686 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46885 * 299.99575 * 1 2 3 30 30 H 1.09004 * 109.46885 * 240.00425 * 2 1 3 31 31 H 1.08995 * 109.47123 * 120.00129 * 2 1 3 32 32 H 1.09005 * 109.46800 * 300.00411 * 3 2 1 33 33 H 1.09002 * 109.46688 * 59.99679 * 3 2 1 34 34 H 1.09001 * 117.50233 * 359.97438 * 6 4 3 35 35 H 1.09003 * 117.49990 * 144.99917 * 6 4 3 36 36 H 1.08998 * 109.88661 * 300.44018 * 12 11 9 37 37 H 1.08994 * 109.88548 * 61.60753 * 12 11 9 38 38 H 1.09002 * 110.72664 * 140.55316 * 13 12 11 39 39 H 1.08993 * 110.72253 * 263.65499 * 13 12 11 40 40 H 1.09003 * 109.47532 * 94.80330 * 17 16 14 41 41 H 1.08998 * 109.47125 * 214.81326 * 17 16 14 42 42 H 1.09008 * 109.46706 * 334.80719 * 17 16 14 43 43 H 0.97004 * 119.99557 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.37022 * 274.74133 * 26 11 9 45 45 H 1.09004 * 110.37096 * 37.06948 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0399 0.5849 -0.4818 6 6 4.2769 2.0456 1.2149 7 6 4.2764 2.7945 -0.1193 8 1 3.6511 3.6839 -0.1969 9 6 5.5689 2.8388 -0.8930 10 8 6.0113 1.8263 -1.3930 11 7 6.2333 4.0035 -1.0290 12 6 5.8128 5.2994 -0.4764 13 6 6.8644 6.3438 -0.9065 14 6 7.5181 5.6866 -2.1508 15 1 6.9197 5.8618 -3.0449 16 7 8.8897 6.1660 -2.3382 17 6 9.8818 5.9811 -1.2762 18 6 9.2445 6.7868 -3.5061 19 1 8.4909 7.2658 -4.1136 20 6 10.5728 6.8004 -3.9091 21 7 11.4549 6.0414 -3.2942 22 14 11.1082 7.8961 -5.3242 23 1 10.8204 9.3137 -4.9889 24 1 12.5652 7.7278 -5.5566 25 1 10.3645 7.5171 -6.5524 26 6 7.5053 4.1877 -1.7510 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.6520 2.4428 2.0148 35 1 5.2119 1.5847 1.5333 36 1 4.8353 5.5723 -0.8739 37 1 5.7703 5.2424 0.6112 38 1 6.3855 7.2855 -1.1746 39 1 7.6001 6.4979 -0.1172 40 1 10.4487 5.0691 -1.4633 41 1 10.5603 6.8340 -1.2604 42 1 9.3743 5.9027 -0.3147 43 1 12.3830 6.0508 -3.5761 44 1 8.3483 3.9594 -1.0989 45 1 7.5313 3.5582 -2.6405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972277776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:51 Heat of formation + Delta-G solvation = -16.658038 kcal Electronic energy + Delta-G solvation = -22048.740893 eV Core-core repulsion = 18873.495910 eV Total energy + Delta-G solvation = -3175.244983 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29784 -39.38464 -37.91737 -36.55632 -34.71893 -33.46790 -31.30042 -29.69736 -28.28740 -28.07874 -26.02616 -24.26406 -23.41650 -22.70133 -21.44154 -20.95486 -19.89764 -18.96273 -18.32430 -17.51960 -16.73528 -16.38644 -16.03012 -15.85274 -15.33007 -15.04332 -14.77724 -14.53798 -14.32683 -14.19868 -13.93549 -13.55462 -13.47210 -13.12369 -13.06147 -12.88880 -12.74670 -12.50286 -12.41764 -12.23805 -12.18958 -12.06649 -11.92600 -11.84489 -11.65329 -11.44583 -11.16778 -10.99949 -10.78200 -10.65265 -9.68364 -8.80582 -7.85189 -5.36681 1.44752 1.47008 1.49032 1.55749 1.91325 2.50104 2.86091 3.26615 3.42772 3.56207 3.72956 3.85010 3.91831 3.99084 4.17495 4.20422 4.23312 4.31373 4.33857 4.40951 4.44862 4.65762 4.69246 4.77902 4.84546 4.85964 4.89856 4.95832 4.99260 5.00607 5.08881 5.19193 5.22673 5.25129 5.30163 5.38818 5.42264 5.43454 5.54054 5.62469 5.69441 6.29986 6.56146 7.10338 7.13041 7.81710 8.26324 9.17438 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038126 B = 0.002977 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.239140 B = 9402.847069 C = 9495.179299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.122 4.122 5 H 0.087 0.913 6 C -0.131 4.131 7 C -0.187 4.187 8 H 0.152 0.848 9 C 0.543 3.457 10 O -0.600 6.600 11 N -0.611 5.611 12 C 0.109 3.891 13 C -0.140 4.140 14 C 0.166 3.834 15 H 0.074 0.926 16 N -0.602 5.602 17 C 0.178 3.822 18 C -0.268 4.268 19 H 0.076 0.924 20 C -0.053 4.053 21 N -0.939 5.939 22 Si 0.974 3.026 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.277 1.277 26 C 0.097 3.903 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.072 0.928 40 H -0.002 1.002 41 H 0.020 0.980 42 H 0.034 0.966 43 H 0.249 0.751 44 H 0.048 0.952 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.585 -4.052 11.602 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.119 4.119 4 C -0.141 4.141 5 H 0.105 0.895 6 C -0.168 4.168 7 C -0.207 4.207 8 H 0.169 0.831 9 C 0.334 3.666 10 O -0.482 6.482 11 N -0.344 5.344 12 C -0.013 4.013 13 C -0.179 4.179 14 C 0.057 3.943 15 H 0.092 0.908 16 N -0.323 5.323 17 C 0.034 3.966 18 C -0.398 4.398 19 H 0.094 0.906 20 C -0.249 4.249 21 N -0.585 5.585 22 Si 0.801 3.199 23 H -0.199 1.199 24 H -0.223 1.223 25 H -0.203 1.203 26 C -0.029 4.029 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.157 0.843 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.016 0.984 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.200 -4.622 11.319 24.473 hybrid contribution 1.423 0.135 -1.197 1.864 sum -19.777 -4.487 10.123 22.666 Atomic orbital electron populations 1.21762 0.94829 1.01981 1.02231 1.21509 0.96496 0.96339 1.01839 1.21223 0.89759 0.97700 1.03179 1.22465 0.96122 0.94078 1.01461 0.89479 1.23205 1.02690 1.00645 0.90296 1.22286 0.95512 1.00324 1.02622 0.83059 1.20226 0.85575 0.81080 0.79734 1.90656 1.70623 1.35234 1.51687 1.48527 1.23254 1.09331 1.53241 1.22229 0.98816 0.80507 0.99702 1.23078 0.97892 0.98743 0.98236 1.21664 0.86196 0.89275 0.97162 0.90822 1.44040 1.06485 1.66708 1.15064 1.20500 0.90193 0.98186 0.87769 1.19560 0.93107 1.27228 0.99931 0.90647 1.25911 0.97374 1.00379 1.01196 1.70241 1.02503 1.41283 1.44496 0.85250 0.76406 0.78949 0.79260 1.19878 1.22285 1.20265 1.22705 0.85477 0.99804 0.94906 0.92736 0.92529 0.91809 0.93154 0.91670 0.91384 0.89475 0.84308 0.89935 0.88655 0.89016 0.88505 0.90977 0.98375 0.96126 0.94747 0.94226 0.93407 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.70 5.89 30.60 0.18 -1.52 16 3 C -0.08 -1.12 5.49 30.59 0.17 -0.95 16 4 C -0.12 -2.43 5.25 -10.79 -0.06 -2.49 16 5 H 0.09 2.28 7.60 -2.39 -0.02 2.26 16 6 C -0.13 -2.25 9.88 30.59 0.30 -1.95 16 7 C -0.19 -3.99 5.26 -11.54 -0.06 -4.05 16 8 H 0.15 2.30 7.67 -2.39 -0.02 2.28 16 9 C 0.54 17.93 7.63 87.66 0.67 18.60 16 10 O -0.60 -25.78 16.51 -3.02 -0.05 -25.83 16 11 N -0.61 -19.71 3.32 -811.39 -2.70 -22.41 16 12 C 0.11 2.50 6.31 86.73 0.55 3.05 16 13 C -0.14 -4.01 6.48 31.78 0.21 -3.80 16 14 C 0.17 6.59 3.56 46.46 0.17 6.75 16 15 H 0.07 2.96 7.96 -2.39 -0.02 2.94 16 16 N -0.60 -29.80 2.96 -694.56 -2.05 -31.85 16 17 C 0.18 8.80 7.58 127.77 0.97 9.77 16 18 C -0.27 -14.59 9.61 84.03 0.81 -13.78 16 19 H 0.08 3.92 7.85 -2.91 -0.02 3.89 16 20 C -0.05 -3.00 5.14 84.86 0.44 -2.56 16 21 N -0.94 -56.24 10.65 21.65 0.23 -56.01 16 22 Si 0.97 45.03 29.57 68.60 2.03 47.06 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 C 0.10 3.95 6.47 86.94 0.56 4.51 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.09 0.85 7.88 -2.39 -0.02 0.83 16 34 H 0.14 1.41 8.03 -2.39 -0.02 1.39 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 1.65 7.98 -2.39 -0.02 1.63 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.07 2.16 6.37 -2.39 -0.02 2.15 16 40 H 0.00 -0.12 7.35 -2.39 -0.02 -0.13 16 41 H 0.02 1.08 7.32 -2.39 -0.02 1.06 16 42 H 0.03 1.43 6.34 -2.38 -0.02 1.41 16 43 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.05 2.12 7.06 -2.39 -0.02 2.10 16 45 H 0.04 1.76 8.03 -2.39 -0.02 1.74 16 Total: -1.00 -71.41 357.82 4.00 -67.40 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.94 Total: 10.99 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 5.61 Total: 10.66 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -4.52 Total: -110.27 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.41 4.00 -67.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972277776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.744 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds