Wall clock time and date at job start Tue Mar 31 2020 02:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47139 * 2 1 4 4 H 1.08998 * 115.55184 * 29.33001 * 3 2 1 5 5 C 1.53004 * 117.51978 * 243.62897 * 3 2 1 6 6 C 1.52997 * 59.99945 * 252.52052 * 5 3 2 7 7 H 1.08999 * 117.52230 * 107.48484 * 6 5 3 8 8 C 1.50699 * 117.50051 * 252.50748 * 6 5 3 9 9 O 1.21284 * 119.99869 * 68.61799 * 8 6 5 10 10 N 1.34777 * 120.00560 * 248.62514 * 8 6 5 11 11 C 1.46494 * 120.00449 * 179.97438 * 10 8 6 12 12 H 1.09002 * 110.64224 * 36.68619 * 11 10 8 13 13 C 1.54325 * 110.72241 * 273.54947 * 11 10 8 14 14 N 1.47026 * 107.26985 * 263.65053 * 13 11 10 15 15 C 1.36936 * 125.65021 * 181.02200 * 14 13 11 16 16 H 1.07994 * 119.99672 * 185.18209 * 15 14 13 17 17 C 1.38811 * 119.99637 * 4.90142 * 15 14 13 18 18 N 1.31613 * 120.00320 * 353.26787 * 17 15 14 19 19 Si 1.86804 * 119.99642 * 173.26875 * 17 15 14 20 20 H 1.48498 * 109.46825 * 94.98907 * 19 17 15 21 21 H 1.48493 * 109.47062 * 214.98403 * 19 17 15 22 22 H 1.48499 * 109.47097 * 334.98688 * 19 17 15 23 23 C 1.47432 * 108.70028 * 1.28278 * 14 13 11 24 24 C 1.55129 * 104.72268 * 335.55492 * 23 14 13 25 25 C 1.52999 * 111.19274 * 279.19005 * 24 23 14 26 26 C 1.52999 * 110.93633 * 155.28815 * 24 23 14 27 27 H 1.08997 * 109.47154 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46792 * 299.99893 * 1 2 3 29 29 H 1.09009 * 109.47116 * 59.99753 * 1 2 3 30 30 H 1.09000 * 109.46792 * 240.00107 * 2 1 3 31 31 H 1.09001 * 109.47204 * 119.99964 * 2 1 3 32 32 H 1.08994 * 117.49630 * 145.03046 * 5 3 2 33 33 H 1.09001 * 117.49432 * 0.02562 * 5 3 2 34 34 H 0.96994 * 119.99562 * 359.97438 * 10 8 6 35 35 H 1.08995 * 109.88716 * 144.23392 * 13 11 10 36 36 H 1.08993 * 109.88097 * 23.06378 * 13 11 10 37 37 H 0.96996 * 120.00254 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.36186 * 94.48413 * 23 14 13 39 39 H 1.08994 * 110.36468 * 216.80132 * 23 14 13 40 40 H 1.09000 * 109.47272 * 172.19059 * 25 24 23 41 41 H 1.09005 * 109.46514 * 292.18966 * 25 24 23 42 42 H 1.08998 * 109.47124 * 52.18575 * 25 24 23 43 43 H 1.08997 * 109.47485 * 307.95411 * 26 24 23 44 44 H 1.09001 * 109.47084 * 67.95544 * 26 24 23 45 45 H 1.09005 * 109.46979 * 187.95834 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9081 -1.2157 6 6 3.5501 1.6579 0.1182 7 1 4.1804 0.7719 0.1961 8 6 4.0229 2.8616 0.8919 9 8 3.2159 3.6161 1.3923 10 7 5.3425 3.0998 1.0277 11 6 5.8020 4.2703 1.7793 12 1 5.1531 4.4565 2.6350 13 6 5.8715 5.5127 0.8664 14 7 7.2619 5.6381 0.4050 15 6 7.7462 6.6259 -0.4103 16 1 8.7666 6.5842 -0.7615 17 6 6.9238 7.6777 -0.7901 18 7 5.6453 7.6592 -0.4781 19 14 7.6317 9.1192 -1.7442 20 1 7.4261 8.8991 -3.1984 21 1 6.9466 10.3703 -1.3313 22 1 9.0850 9.2341 -1.4615 23 6 8.0469 4.5206 0.9606 24 6 7.2742 4.0914 2.2354 25 6 7.5986 5.0108 3.4146 26 6 7.5661 2.6310 2.5859 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7212 2.9434 -1.5337 33 1 3.0092 1.1868 -2.0160 34 1 5.9879 2.4963 0.6277 35 1 5.5858 6.4019 1.4280 36 1 5.2078 5.3822 0.0118 37 1 5.0706 8.3940 -0.7438 38 1 8.0930 3.6978 0.2470 39 1 9.0512 4.8549 1.2206 40 1 6.9421 4.7734 4.2517 41 1 8.6365 4.8650 3.7140 42 1 7.4484 6.0488 3.1180 43 1 7.3930 2.0055 1.7102 44 1 8.6046 2.5339 2.9023 45 1 6.9084 2.3131 3.3951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975059132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:37 Heat of formation + Delta-G solvation = -1.300491 kcal Electronic energy + Delta-G solvation = -22953.573896 eV Core-core repulsion = 19778.994865 eV Total energy + Delta-G solvation = -3174.579030 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.92036 -38.41535 -36.60365 -33.81702 -32.90964 -32.06185 -30.68336 -28.18398 -26.86843 -25.61605 -24.58777 -23.76665 -22.80020 -20.64400 -20.14819 -19.63520 -18.58622 -16.97496 -16.63029 -15.80013 -14.86574 -14.83747 -14.55421 -14.23844 -14.01187 -13.85180 -13.67153 -13.25305 -12.67686 -12.53595 -12.33597 -12.13390 -12.01537 -11.95498 -11.64607 -11.40047 -11.33625 -11.07952 -11.04279 -10.98253 -10.75469 -10.36262 -10.27136 -10.17685 -10.02686 -9.92411 -9.85605 -9.63360 -9.33800 -8.57155 -8.36967 -6.79527 -5.67294 -3.01084 2.90792 3.41602 3.47029 3.49531 3.52311 3.98868 4.52365 4.66324 4.82179 4.89024 4.97400 5.12967 5.23778 5.27128 5.31522 5.34089 5.38302 5.55937 5.65634 5.65998 5.78816 5.82727 5.83335 5.93744 5.95318 6.04643 6.05496 6.10044 6.18716 6.22787 6.27586 6.37048 6.42317 6.61350 6.63665 6.70531 6.81265 7.00479 7.60371 7.68380 7.86569 8.03517 8.28860 8.73047 9.24621 9.85726 10.51832 11.43536 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.004859 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.029962 B = 5761.418514 C = 6897.085937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.121 4.121 4 H 0.117 0.883 5 C -0.148 4.148 6 C -0.188 4.188 7 H 0.118 0.882 8 C 0.540 3.460 9 O -0.542 6.542 10 N -0.707 5.707 11 C 0.124 3.876 12 H 0.085 0.915 13 C 0.176 3.824 14 N -0.603 5.603 15 C -0.231 4.231 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.916 5.916 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.144 3.856 24 C -0.089 4.089 25 C -0.125 4.125 26 C -0.131 4.131 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.395 0.605 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.252 0.748 38 H 0.015 0.985 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 -15.905 3.379 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.140 4.140 4 H 0.135 0.865 5 C -0.185 4.185 6 C -0.209 4.209 7 H 0.136 0.864 8 C 0.326 3.674 9 O -0.420 6.420 10 N -0.357 5.357 11 C 0.020 3.980 12 H 0.103 0.897 13 C 0.050 3.950 14 N -0.329 5.329 15 C -0.359 4.359 16 H 0.095 0.905 17 C -0.202 4.202 18 N -0.563 5.563 19 Si 0.739 3.261 20 H -0.218 1.218 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.018 3.982 24 C -0.091 4.091 25 C -0.183 4.183 26 C -0.189 4.189 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.229 0.771 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.550 -15.131 3.650 15.965 hybrid contribution 0.775 0.538 -0.837 1.261 sum -2.775 -14.593 2.813 15.119 Atomic orbital electron populations 1.21740 0.95334 1.01363 1.02232 1.21139 0.96142 0.93902 1.01879 1.22449 0.91682 0.98335 1.01539 0.86469 1.23090 1.01878 1.03382 0.90196 1.22292 0.97253 0.99067 1.02284 0.86433 1.19521 0.82520 0.85356 0.80002 1.90687 1.53927 1.48625 1.48737 1.45931 1.06436 1.28271 1.55045 1.22448 0.93702 0.86727 0.95166 0.89708 1.21510 0.86351 0.91835 0.95266 1.44451 1.04925 1.26868 1.56663 1.19015 0.96364 0.98689 1.21880 0.90517 1.24817 0.95714 0.98649 1.01034 1.69983 1.03229 1.32226 1.50863 0.86164 0.78052 0.82579 0.79354 1.21782 1.21658 1.20668 1.21668 0.94640 0.90925 0.90990 1.22038 0.95258 0.94984 0.96792 1.21590 1.00283 1.00618 0.95817 1.21677 1.01087 0.95339 1.00751 0.92836 0.92497 0.92498 0.91818 0.91614 0.88017 0.88106 0.77053 0.92818 0.93645 0.93721 0.96779 0.94085 0.93368 0.92897 0.91179 0.93080 0.92659 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.87 37.16 0.37 -0.91 16 2 C -0.09 -0.87 6.22 -26.73 -0.17 -1.04 16 3 C -0.12 -1.50 5.25 -90.62 -0.48 -1.97 16 4 H 0.12 1.69 7.60 -51.93 -0.39 1.29 16 5 C -0.15 -1.87 9.88 -26.73 -0.26 -2.13 16 6 C -0.19 -2.50 5.91 -91.77 -0.54 -3.04 16 7 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 8 C 0.54 9.59 7.61 -10.99 -0.08 9.51 16 9 O -0.54 -11.84 15.98 5.55 0.09 -11.75 16 10 N -0.71 -12.06 4.57 -52.03 -0.24 -12.30 16 11 C 0.12 2.43 2.50 -66.10 -0.17 2.26 16 12 H 0.08 1.73 7.60 -51.93 -0.39 1.34 16 13 C 0.18 4.40 4.80 -3.06 -0.01 4.39 16 14 N -0.60 -15.21 3.38 -169.93 -0.57 -15.79 16 15 C -0.23 -6.45 10.27 -15.06 -0.15 -6.61 16 16 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 17 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 18 N -0.92 -27.62 10.36 55.49 0.57 -27.04 16 19 Si 0.91 22.35 29.56 -169.99 -5.02 17.33 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.14 2.88 6.15 -2.41 -0.01 2.87 16 24 C -0.09 -1.50 0.84 -152.24 -0.13 -1.63 16 25 C -0.13 -2.04 8.58 37.16 0.32 -1.72 16 26 C -0.13 -1.70 8.22 37.16 0.31 -1.40 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 30 H 0.06 0.53 7.88 -51.93 -0.41 0.12 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.10 1.02 8.03 -51.93 -0.42 0.61 16 34 H 0.39 5.80 6.92 -40.82 -0.28 5.52 16 35 H 0.05 1.52 7.30 -51.93 -0.38 1.14 16 36 H 0.05 1.31 7.50 -51.93 -0.39 0.92 16 37 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.01 0.28 7.99 -51.93 -0.41 -0.13 16 39 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 43 H 0.05 0.61 6.39 -51.93 -0.33 0.28 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -32.39 357.49 -8.92 -41.30 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -8.02 Total: 4.53 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.11 Total: -1.67 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.24 Total: -55.13 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.39 -8.92 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975059132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.002 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds