Wall clock time and date at job start Tue Mar 31 2020 02:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47139 * 2 1 4 4 H 1.08998 * 115.55184 * 29.33001 * 3 2 1 5 5 C 1.53004 * 117.51978 * 243.62897 * 3 2 1 6 6 C 1.52997 * 59.99945 * 252.52052 * 5 3 2 7 7 H 1.08999 * 117.52230 * 107.48484 * 6 5 3 8 8 C 1.50699 * 117.50051 * 252.50748 * 6 5 3 9 9 O 1.21284 * 119.99869 * 68.61799 * 8 6 5 10 10 N 1.34777 * 120.00560 * 248.62514 * 8 6 5 11 11 C 1.46494 * 120.00449 * 179.97438 * 10 8 6 12 12 H 1.09002 * 110.64224 * 36.68619 * 11 10 8 13 13 C 1.54325 * 110.72241 * 273.54947 * 11 10 8 14 14 N 1.47026 * 107.26985 * 263.65053 * 13 11 10 15 15 C 1.36936 * 125.65021 * 181.02200 * 14 13 11 16 16 H 1.07994 * 119.99672 * 185.18209 * 15 14 13 17 17 C 1.38811 * 119.99637 * 4.90142 * 15 14 13 18 18 N 1.31613 * 120.00320 * 353.26787 * 17 15 14 19 19 Si 1.86804 * 119.99642 * 173.26875 * 17 15 14 20 20 H 1.48498 * 109.46825 * 94.98907 * 19 17 15 21 21 H 1.48493 * 109.47062 * 214.98403 * 19 17 15 22 22 H 1.48499 * 109.47097 * 334.98688 * 19 17 15 23 23 C 1.47432 * 108.70028 * 1.28278 * 14 13 11 24 24 C 1.55129 * 104.72268 * 335.55492 * 23 14 13 25 25 C 1.52999 * 111.19274 * 279.19005 * 24 23 14 26 26 C 1.52999 * 110.93633 * 155.28815 * 24 23 14 27 27 H 1.08997 * 109.47154 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46792 * 299.99893 * 1 2 3 29 29 H 1.09009 * 109.47116 * 59.99753 * 1 2 3 30 30 H 1.09000 * 109.46792 * 240.00107 * 2 1 3 31 31 H 1.09001 * 109.47204 * 119.99964 * 2 1 3 32 32 H 1.08994 * 117.49630 * 145.03046 * 5 3 2 33 33 H 1.09001 * 117.49432 * 0.02562 * 5 3 2 34 34 H 0.96994 * 119.99562 * 359.97438 * 10 8 6 35 35 H 1.08995 * 109.88716 * 144.23392 * 13 11 10 36 36 H 1.08993 * 109.88097 * 23.06378 * 13 11 10 37 37 H 0.96996 * 120.00254 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.36186 * 94.48413 * 23 14 13 39 39 H 1.08994 * 110.36468 * 216.80132 * 23 14 13 40 40 H 1.09000 * 109.47272 * 172.19059 * 25 24 23 41 41 H 1.09005 * 109.46514 * 292.18966 * 25 24 23 42 42 H 1.08998 * 109.47124 * 52.18575 * 25 24 23 43 43 H 1.08997 * 109.47485 * 307.95411 * 26 24 23 44 44 H 1.09001 * 109.47084 * 67.95544 * 26 24 23 45 45 H 1.09005 * 109.46979 * 187.95834 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9081 -1.2157 6 6 3.5501 1.6579 0.1182 7 1 4.1804 0.7719 0.1961 8 6 4.0229 2.8616 0.8919 9 8 3.2159 3.6161 1.3923 10 7 5.3425 3.0998 1.0277 11 6 5.8020 4.2703 1.7793 12 1 5.1531 4.4565 2.6350 13 6 5.8715 5.5127 0.8664 14 7 7.2619 5.6381 0.4050 15 6 7.7462 6.6259 -0.4103 16 1 8.7666 6.5842 -0.7615 17 6 6.9238 7.6777 -0.7901 18 7 5.6453 7.6592 -0.4781 19 14 7.6317 9.1192 -1.7442 20 1 7.4261 8.8991 -3.1984 21 1 6.9466 10.3703 -1.3313 22 1 9.0850 9.2341 -1.4615 23 6 8.0469 4.5206 0.9606 24 6 7.2742 4.0914 2.2354 25 6 7.5986 5.0108 3.4146 26 6 7.5661 2.6310 2.5859 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7212 2.9434 -1.5337 33 1 3.0092 1.1868 -2.0160 34 1 5.9879 2.4963 0.6277 35 1 5.5858 6.4019 1.4280 36 1 5.2078 5.3822 0.0118 37 1 5.0706 8.3940 -0.7438 38 1 8.0930 3.6978 0.2470 39 1 9.0512 4.8549 1.2206 40 1 6.9421 4.7734 4.2517 41 1 8.6365 4.8650 3.7140 42 1 7.4484 6.0488 3.1180 43 1 7.3930 2.0055 1.7102 44 1 8.6046 2.5339 2.9023 45 1 6.9084 2.3131 3.3951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975059132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:37 Heat of formation + Delta-G solvation = -21.774492 kcal Electronic energy + Delta-G solvation = -22954.461715 eV Core-core repulsion = 19778.994865 eV Total energy + Delta-G solvation = -3175.466849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37940 -39.85860 -37.84031 -35.69664 -34.45679 -32.86625 -32.63141 -29.92386 -28.13017 -27.45143 -25.97458 -24.75505 -24.28617 -22.19208 -21.40680 -21.06416 -20.02831 -18.69259 -18.26101 -17.34092 -16.70353 -16.07860 -15.81101 -15.69380 -15.41598 -15.21364 -15.06143 -14.78335 -14.04528 -13.82811 -13.54824 -13.40696 -13.36447 -13.13450 -12.98920 -12.98188 -12.86007 -12.68978 -12.59238 -12.17989 -12.13837 -11.91791 -11.87219 -11.76468 -11.52308 -11.31731 -11.22079 -11.01142 -10.79679 -10.67244 -9.97844 -8.90563 -7.85801 -5.21683 1.42561 1.44813 1.54089 1.54585 2.17944 2.48096 2.89276 3.32413 3.48028 3.65682 3.73751 3.79449 3.87291 3.96639 4.07346 4.19506 4.28884 4.39017 4.50581 4.52232 4.59068 4.69583 4.78218 4.84954 4.88180 4.94435 4.95160 4.99593 5.05412 5.13620 5.15803 5.16771 5.24818 5.31428 5.32578 5.35909 5.45393 5.52044 5.56171 5.70463 5.75147 6.16147 6.62997 7.06438 7.33183 7.76681 8.41563 9.23933 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.004859 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.029962 B = 5761.418514 C = 6897.085937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 C -0.116 4.116 4 H 0.086 0.914 5 C -0.147 4.147 6 C -0.187 4.187 7 H 0.159 0.841 8 C 0.530 3.470 9 O -0.593 6.593 10 N -0.695 5.695 11 C 0.136 3.864 12 H 0.072 0.928 13 C 0.195 3.805 14 N -0.620 5.620 15 C -0.239 4.239 16 H 0.088 0.912 17 C -0.069 4.069 18 N -0.953 5.953 19 Si 0.977 3.023 20 H -0.288 1.288 21 H -0.298 1.298 22 H -0.263 1.263 23 C 0.138 3.862 24 C -0.074 4.074 25 C -0.124 4.124 26 C -0.123 4.123 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.411 0.589 35 H 0.004 0.996 36 H -0.006 1.006 37 H 0.243 0.757 38 H 0.032 0.968 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.028 0.972 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 -19.290 3.373 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.123 4.123 3 C -0.135 4.135 4 H 0.104 0.896 5 C -0.184 4.184 6 C -0.208 4.208 7 H 0.177 0.823 8 C 0.319 3.681 9 O -0.474 6.474 10 N -0.346 5.346 11 C 0.030 3.970 12 H 0.090 0.910 13 C 0.068 3.932 14 N -0.346 5.346 15 C -0.368 4.368 16 H 0.106 0.894 17 C -0.262 4.262 18 N -0.603 5.603 19 Si 0.805 3.195 20 H -0.215 1.215 21 H -0.225 1.225 22 H -0.187 1.187 23 C 0.014 3.986 24 C -0.075 4.075 25 C -0.181 4.181 26 C -0.181 4.181 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.248 0.752 35 H 0.022 0.978 36 H 0.013 0.987 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.499 -18.575 3.640 18.988 hybrid contribution 0.153 1.622 -0.834 1.830 sum -1.346 -16.953 2.806 17.236 Atomic orbital electron populations 1.21758 0.95079 1.02384 1.01610 1.21153 0.96321 0.91447 1.03365 1.22488 0.90635 0.99807 1.00604 0.89579 1.23153 1.01778 1.02529 0.90974 1.22361 0.98479 0.98114 1.01828 0.82342 1.20430 0.82141 0.86148 0.79402 1.90665 1.55165 1.50759 1.50853 1.45779 1.06842 1.27364 1.54644 1.22050 0.95919 0.85480 0.93524 0.91032 1.21051 0.85723 0.92790 0.93590 1.44700 1.05609 1.27886 1.56451 1.19491 0.96690 0.99194 1.21385 0.89430 1.25702 0.95991 1.01572 1.02895 1.70259 1.04690 1.32562 1.52752 0.85087 0.78044 0.78651 0.77731 1.21523 1.22509 1.18711 1.21945 0.94698 0.89576 0.92429 1.22018 0.91756 0.98207 0.95521 1.21591 1.02460 0.97983 0.96104 1.21652 1.02912 0.91625 1.01894 0.90923 0.93546 0.92850 0.89705 0.90584 0.91366 0.84552 0.75171 0.97832 0.98731 0.94790 0.95058 0.93231 0.91667 0.90135 0.95297 0.91628 0.90227 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.87 71.98 0.71 -1.61 16 2 C -0.09 -1.36 6.22 30.59 0.19 -1.17 16 3 C -0.12 -2.77 5.25 -10.79 -0.06 -2.83 16 4 H 0.09 2.61 7.60 -2.39 -0.02 2.59 16 5 C -0.15 -3.57 9.88 30.59 0.30 -3.27 16 6 C -0.19 -4.69 5.91 -11.54 -0.07 -4.76 16 7 H 0.16 2.68 8.14 -2.39 -0.02 2.66 16 8 C 0.53 19.10 7.61 87.66 0.67 19.76 16 9 O -0.59 -27.46 15.98 -3.04 -0.05 -27.50 16 10 N -0.70 -23.41 4.57 -436.93 -2.00 -25.41 16 11 C 0.14 5.43 2.50 46.18 0.12 5.55 16 12 H 0.07 3.06 7.60 -2.39 -0.02 3.04 16 13 C 0.19 10.38 4.80 86.73 0.42 10.80 16 14 N -0.62 -32.08 3.38 -691.55 -2.34 -34.41 16 15 C -0.24 -13.56 10.27 84.03 0.86 -12.70 16 16 H 0.09 4.67 7.84 -2.91 -0.02 4.65 16 17 C -0.07 -4.07 5.48 84.86 0.46 -3.60 16 18 N -0.95 -61.12 10.36 21.65 0.22 -60.90 16 19 Si 0.98 47.21 29.56 68.60 2.03 49.24 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 22 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 23 C 0.14 5.31 6.15 86.93 0.53 5.85 16 24 C -0.07 -2.35 0.84 -50.71 -0.04 -2.39 16 25 C -0.12 -3.86 8.58 71.98 0.62 -3.24 16 26 C -0.12 -2.66 8.22 71.98 0.59 -2.07 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.08 1.04 7.88 -2.39 -0.02 1.02 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.14 2.34 8.03 -2.39 -0.02 2.32 16 34 H 0.41 11.08 6.92 -92.71 -0.64 10.44 16 35 H 0.00 0.22 7.30 -2.39 -0.02 0.20 16 36 H -0.01 -0.34 7.50 -2.39 -0.02 -0.36 16 37 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.03 1.13 7.99 -2.39 -0.02 1.11 16 39 H 0.05 1.84 8.06 -2.39 -0.02 1.82 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.03 1.12 7.91 -2.39 -0.02 1.10 16 43 H 0.06 1.25 6.39 -2.39 -0.02 1.23 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 1.31 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -77.73 357.49 3.49 -74.24 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.31 Total: 20.42 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.31 Total: 4.33 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -4.11 Total: -120.72 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.50 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -77.73 3.49 -74.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975059132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.468 kcal (2) G-P(sol) polarization free energy of solvation -77.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds