Wall clock time and date at job start Tue Mar 31 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47361 * 2 1 4 4 C 1.50705 * 109.46804 * 119.99356 * 2 1 3 5 5 O 1.21276 * 120.00360 * 240.00429 * 4 2 1 6 6 N 1.34778 * 119.99590 * 59.99839 * 4 2 1 7 7 C 1.46500 * 119.99673 * 179.97438 * 6 4 2 8 8 H 1.08997 * 109.79034 * 34.50728 * 7 6 4 9 9 C 1.52153 * 109.14598 * 273.78660 * 7 6 4 10 10 C 1.52836 * 107.57552 * 175.60471 * 9 7 6 11 11 C 1.50891 * 111.56857 * 60.00008 * 10 9 7 12 12 H 1.08996 * 109.03427 * 186.18031 * 11 10 9 13 13 C 1.53374 * 112.32972 * 65.29962 * 11 10 9 14 14 N 1.47435 * 106.51240 * 212.89205 * 13 11 10 15 15 C 1.36935 * 125.72575 * 179.33424 * 14 13 11 16 16 H 1.07997 * 120.00021 * 180.02562 * 15 14 13 17 17 C 1.38816 * 119.99887 * 0.02603 * 15 14 13 18 18 N 1.31614 * 120.00176 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99885 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46999 * 59.99998 * 19 17 15 21 21 H 1.48495 * 109.47091 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47277 * 300.00146 * 19 17 15 23 23 C 1.49591 * 108.79337 * 359.42012 * 14 13 11 24 24 C 1.54061 * 113.56195 * 307.87164 * 11 10 9 25 25 H 1.08999 * 112.61285 * 280.83069 * 24 11 10 26 26 C 1.52626 * 109.63214 * 155.00451 * 7 6 4 27 27 H 1.09006 * 109.46775 * 60.00292 * 1 2 3 28 28 H 1.08995 * 109.47145 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47302 * 300.00688 * 1 2 3 30 30 H 1.08999 * 109.47302 * 239.99312 * 2 1 3 31 31 H 1.09001 * 109.47430 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.46938 * 299.99608 * 3 2 1 33 33 H 1.08999 * 109.47474 * 59.99418 * 3 2 1 34 34 H 0.96994 * 120.00413 * 0.02562 * 6 4 2 35 35 H 1.09001 * 109.24527 * 56.55954 * 9 7 6 36 36 H 1.09001 * 110.80503 * 295.53438 * 9 7 6 37 37 H 1.09000 * 109.05677 * 299.45815 * 10 9 7 38 38 H 1.09003 * 109.00502 * 180.49945 * 10 9 7 39 39 H 1.08996 * 110.05473 * 332.15376 * 13 11 10 40 40 H 1.08996 * 110.04847 * 93.58298 * 13 11 10 41 41 H 0.97002 * 120.00110 * 180.02562 * 18 17 15 42 42 H 1.09001 * 110.49476 * 266.37106 * 23 14 13 43 43 H 1.08992 * 111.26550 * 143.24486 * 23 14 13 44 44 H 1.09002 * 109.18768 * 61.53573 * 26 7 6 45 45 H 1.09001 * 109.18451 * 302.23498 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -0.1209 2.0290 6 7 1.7066 -2.0006 1.4440 7 6 2.1953 -2.6913 2.6399 8 1 2.2427 -1.9932 3.4757 9 6 3.5772 -3.2616 2.3571 10 6 4.0978 -3.8756 3.6563 11 6 3.1926 -4.9767 4.1512 12 1 3.5392 -5.3090 5.1298 13 6 3.1625 -6.1785 3.1988 14 7 1.8047 -6.7468 3.2840 15 6 1.3452 -7.8287 2.5816 16 1 0.3287 -8.1676 2.7159 17 6 2.1861 -8.4898 1.6968 18 7 3.4249 -8.0765 1.5327 19 14 1.5595 -9.9662 0.7391 20 1 0.4049 -9.5577 -0.1006 21 1 2.6437 -10.4881 -0.1311 22 1 1.1316 -11.0260 1.6873 23 6 1.0076 -5.9455 4.2640 24 6 1.7144 -4.5566 4.2600 25 1 1.5089 -3.9756 5.1591 26 6 1.2561 -3.8433 2.9866 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.1492 -2.4722 0.8053 35 1 4.2400 -2.4567 2.0393 36 1 3.5292 -4.0267 1.5822 37 1 4.1611 -3.0977 4.4172 38 1 5.0931 -4.2844 3.4819 39 1 3.3678 -5.8526 2.1792 40 1 3.8987 -6.9199 3.5092 41 1 4.0123 -8.5383 0.9142 42 1 1.0582 -6.3954 5.2555 43 1 -0.0291 -5.8459 3.9426 44 1 1.2433 -4.5557 2.1617 45 1 0.2499 -3.4521 3.1375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979525573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:19 Heat of formation + Delta-G solvation = -35.227064 kcal Electronic energy + Delta-G solvation = -23261.473500 eV Core-core repulsion = 20085.423304 eV Total energy + Delta-G solvation = -3176.050197 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.18645 -38.89345 -35.42278 -34.51406 -33.28824 -31.83892 -30.28025 -28.75313 -27.23523 -26.09413 -24.92412 -23.63306 -22.09710 -21.02207 -20.21024 -19.62696 -18.09594 -17.01425 -16.76877 -15.97266 -15.33505 -15.15535 -14.58068 -14.20628 -13.95820 -13.87981 -13.40682 -13.31712 -12.88492 -12.45608 -12.33320 -12.20890 -12.08765 -11.91244 -11.62381 -11.32235 -11.26875 -11.20660 -11.11994 -11.02080 -10.82170 -10.57960 -10.50290 -9.99806 -9.87236 -9.75583 -9.63458 -9.39591 -9.36952 -8.75742 -8.55864 -6.79147 -5.68244 -3.00676 2.75972 3.31698 3.40247 3.45094 3.46151 4.51011 4.61147 4.75730 4.82375 5.03022 5.16946 5.26871 5.35622 5.42599 5.50361 5.53637 5.56139 5.64762 5.66375 5.72020 5.75690 5.84291 5.92502 5.97702 5.98324 6.00408 6.10770 6.13415 6.37486 6.42918 6.51524 6.55320 6.65057 6.71614 6.72953 6.79064 6.91652 7.05792 7.58672 7.67546 7.69654 7.88287 8.26864 8.36701 9.24519 9.83612 10.52593 11.43169 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020297 B = 0.004595 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.162481 B = 6092.357378 C = 6647.589286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.131 4.131 4 C 0.515 3.485 5 O -0.546 6.546 6 N -0.723 5.723 7 C 0.148 3.852 8 H 0.082 0.918 9 C -0.126 4.126 10 C -0.096 4.096 11 C -0.113 4.113 12 H 0.058 0.942 13 C 0.188 3.812 14 N -0.607 5.607 15 C -0.226 4.226 16 H 0.075 0.925 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.133 3.867 24 C -0.092 4.092 25 H 0.073 0.927 26 C -0.114 4.114 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.399 0.601 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.038 0.962 41 H 0.251 0.749 42 H 0.020 0.980 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 14.743 -1.347 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C -0.189 4.189 4 C 0.301 3.699 5 O -0.423 6.423 6 N -0.373 5.373 7 C 0.045 3.955 8 H 0.100 0.900 9 C -0.164 4.164 10 C -0.135 4.135 11 C -0.132 4.132 12 H 0.077 0.923 13 C 0.064 3.936 14 N -0.335 5.335 15 C -0.354 4.354 16 H 0.093 0.907 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C 0.007 3.993 24 C -0.112 4.112 25 H 0.091 0.909 26 C -0.152 4.152 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.233 0.767 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.499 14.994 -0.927 15.425 hybrid contribution -0.521 -1.218 -0.838 1.568 sum -4.021 13.776 -1.765 14.459 Atomic orbital electron populations 1.21785 0.93038 1.02611 1.02706 1.21326 0.97527 0.98031 0.97029 1.21591 1.01769 0.93675 1.01820 1.20634 0.79984 0.81802 0.87484 1.90672 1.38131 1.66374 1.47169 1.46220 1.53357 1.11875 1.25812 1.20828 0.94211 0.93525 0.86963 0.89977 1.21752 0.95745 0.99920 0.99001 1.20845 0.99138 0.97134 0.96341 1.21663 0.93776 0.97288 1.00458 0.92330 1.21047 0.86667 0.89796 0.96084 1.45060 1.08708 1.32709 1.46984 1.19020 0.96379 1.03572 1.16479 0.90713 1.24755 0.96057 0.99521 1.00122 1.69951 1.05445 1.41948 1.39634 0.86251 0.77403 0.82704 0.79702 1.21316 1.21677 1.21297 1.22207 0.94570 0.89444 0.93035 1.22205 0.96276 0.96599 0.96142 0.90854 1.21727 0.97129 0.96415 0.99944 0.91567 0.91991 0.92131 0.88608 0.92016 0.92288 0.92048 0.76689 0.92491 0.90476 0.92902 0.91963 0.93236 0.94383 0.93830 0.96192 0.94015 0.89586 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.09 37.16 0.34 -0.83 16 2 C -0.12 -1.17 3.26 -91.77 -0.30 -1.47 16 3 C -0.13 -1.27 8.48 37.16 0.32 -0.96 16 4 C 0.51 7.04 7.13 -10.98 -0.08 6.97 16 5 O -0.55 -9.48 15.64 5.56 0.09 -9.39 16 6 N -0.72 -9.57 4.95 -54.41 -0.27 -9.84 16 7 C 0.15 2.26 2.39 -68.55 -0.16 2.09 16 8 H 0.08 1.33 7.57 -51.93 -0.39 0.94 16 9 C -0.13 -2.07 5.35 -27.25 -0.15 -2.22 16 10 C -0.10 -1.58 5.29 -27.87 -0.15 -1.73 16 11 C -0.11 -2.08 2.77 -90.93 -0.25 -2.33 16 12 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 13 C 0.19 4.44 4.34 -3.34 -0.01 4.43 16 14 N -0.61 -15.04 2.96 -167.95 -0.50 -15.54 16 15 C -0.23 -6.18 10.29 -15.06 -0.16 -6.33 16 16 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -26.68 10.34 55.49 0.57 -26.10 16 19 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.13 2.67 6.65 -0.80 -0.01 2.67 16 24 C -0.09 -1.57 3.68 -88.55 -0.33 -1.90 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 C -0.11 -1.82 4.28 -26.93 -0.12 -1.94 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.47 7.57 -51.93 -0.39 0.08 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.40 4.56 8.03 -40.82 -0.33 4.23 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.42 6.66 -51.93 -0.35 1.08 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.27 5.66 -51.93 -0.29 0.98 16 40 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.04 0.81 7.98 -51.93 -0.41 0.39 16 44 H 0.09 1.63 7.18 -51.93 -0.37 1.26 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -31.03 343.29 -9.07 -40.10 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.97 Total: 2.64 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.14 Total: -3.88 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.19 Total: -51.49 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.03 -9.07 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979525573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.874 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds