Wall clock time and date at job start Tue Mar 31 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47361 * 2 1 4 4 C 1.50705 * 109.46804 * 119.99356 * 2 1 3 5 5 O 1.21276 * 120.00360 * 240.00429 * 4 2 1 6 6 N 1.34778 * 119.99590 * 59.99839 * 4 2 1 7 7 C 1.46500 * 119.99673 * 179.97438 * 6 4 2 8 8 H 1.08997 * 109.79034 * 34.50728 * 7 6 4 9 9 C 1.52153 * 109.14598 * 273.78660 * 7 6 4 10 10 C 1.52836 * 107.57552 * 175.60471 * 9 7 6 11 11 C 1.50891 * 111.56857 * 60.00008 * 10 9 7 12 12 H 1.08996 * 109.03427 * 186.18031 * 11 10 9 13 13 C 1.53374 * 112.32972 * 65.29962 * 11 10 9 14 14 N 1.47435 * 106.51240 * 212.89205 * 13 11 10 15 15 C 1.36935 * 125.72575 * 179.33424 * 14 13 11 16 16 H 1.07997 * 120.00021 * 180.02562 * 15 14 13 17 17 C 1.38816 * 119.99887 * 0.02603 * 15 14 13 18 18 N 1.31614 * 120.00176 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99885 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46999 * 59.99998 * 19 17 15 21 21 H 1.48495 * 109.47091 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47277 * 300.00146 * 19 17 15 23 23 C 1.49591 * 108.79337 * 359.42012 * 14 13 11 24 24 C 1.54061 * 113.56195 * 307.87164 * 11 10 9 25 25 H 1.08999 * 112.61285 * 280.83069 * 24 11 10 26 26 C 1.52626 * 109.63214 * 155.00451 * 7 6 4 27 27 H 1.09006 * 109.46775 * 60.00292 * 1 2 3 28 28 H 1.08995 * 109.47145 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47302 * 300.00688 * 1 2 3 30 30 H 1.08999 * 109.47302 * 239.99312 * 2 1 3 31 31 H 1.09001 * 109.47430 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.46938 * 299.99608 * 3 2 1 33 33 H 1.08999 * 109.47474 * 59.99418 * 3 2 1 34 34 H 0.96994 * 120.00413 * 0.02562 * 6 4 2 35 35 H 1.09001 * 109.24527 * 56.55954 * 9 7 6 36 36 H 1.09001 * 110.80503 * 295.53438 * 9 7 6 37 37 H 1.09000 * 109.05677 * 299.45815 * 10 9 7 38 38 H 1.09003 * 109.00502 * 180.49945 * 10 9 7 39 39 H 1.08996 * 110.05473 * 332.15376 * 13 11 10 40 40 H 1.08996 * 110.04847 * 93.58298 * 13 11 10 41 41 H 0.97002 * 120.00110 * 180.02562 * 18 17 15 42 42 H 1.09001 * 110.49476 * 266.37106 * 23 14 13 43 43 H 1.08992 * 111.26550 * 143.24486 * 23 14 13 44 44 H 1.09002 * 109.18768 * 61.53573 * 26 7 6 45 45 H 1.09001 * 109.18451 * 302.23498 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -0.1209 2.0290 6 7 1.7066 -2.0006 1.4440 7 6 2.1953 -2.6913 2.6399 8 1 2.2427 -1.9932 3.4757 9 6 3.5772 -3.2616 2.3571 10 6 4.0978 -3.8756 3.6563 11 6 3.1926 -4.9767 4.1512 12 1 3.5392 -5.3090 5.1298 13 6 3.1625 -6.1785 3.1988 14 7 1.8047 -6.7468 3.2840 15 6 1.3452 -7.8287 2.5816 16 1 0.3287 -8.1676 2.7159 17 6 2.1861 -8.4898 1.6968 18 7 3.4249 -8.0765 1.5327 19 14 1.5595 -9.9662 0.7391 20 1 0.4049 -9.5577 -0.1006 21 1 2.6437 -10.4881 -0.1311 22 1 1.1316 -11.0260 1.6873 23 6 1.0076 -5.9455 4.2640 24 6 1.7144 -4.5566 4.2600 25 1 1.5089 -3.9756 5.1591 26 6 1.2561 -3.8433 2.9866 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.1492 -2.4722 0.8053 35 1 4.2400 -2.4567 2.0393 36 1 3.5292 -4.0267 1.5822 37 1 4.1611 -3.0977 4.4172 38 1 5.0931 -4.2844 3.4819 39 1 3.3678 -5.8526 2.1792 40 1 3.8987 -6.9199 3.5092 41 1 4.0123 -8.5383 0.9142 42 1 1.0582 -6.3954 5.2555 43 1 -0.0291 -5.8459 3.9426 44 1 1.2433 -4.5557 2.1617 45 1 0.2499 -3.4521 3.1375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979525573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:18 Heat of formation + Delta-G solvation = -53.917916 kcal Electronic energy + Delta-G solvation = -23262.283997 eV Core-core repulsion = 20085.423304 eV Total energy + Delta-G solvation = -3176.860693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43222 -40.25014 -36.89345 -35.42190 -34.87071 -33.51470 -31.78110 -30.42541 -27.98848 -27.64736 -26.76954 -24.69004 -23.65016 -22.37103 -21.67717 -20.85843 -19.52354 -18.77822 -18.02184 -17.19548 -16.73061 -16.49194 -16.25718 -15.68731 -15.32662 -15.08268 -14.81151 -14.56740 -13.97831 -13.84301 -13.68609 -13.52644 -13.30250 -13.13089 -12.92688 -12.81956 -12.74181 -12.64302 -12.62731 -12.21823 -12.11281 -12.00418 -11.95423 -11.73994 -11.65767 -11.27853 -11.11475 -10.98841 -10.63810 -10.57234 -9.96118 -8.82137 -7.79280 -5.12997 1.46693 1.49240 1.55496 1.69827 2.26016 2.52374 3.38888 3.58617 3.71120 3.77384 3.85053 3.97635 4.04564 4.09554 4.20994 4.31093 4.34279 4.51684 4.56642 4.59875 4.62347 4.72387 4.78957 4.88820 4.91621 4.95397 4.99121 5.05180 5.08591 5.11428 5.18693 5.26642 5.29642 5.33294 5.34750 5.37621 5.53907 5.61127 5.64286 5.76199 5.90710 6.23706 6.62418 7.15220 7.30632 7.81899 8.49184 9.30543 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020297 B = 0.004595 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.162481 B = 6092.357378 C = 6647.589286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.511 3.489 5 O -0.585 6.585 6 N -0.718 5.718 7 C 0.158 3.842 8 H 0.083 0.917 9 C -0.118 4.118 10 C -0.092 4.092 11 C -0.103 4.103 12 H 0.064 0.936 13 C 0.201 3.799 14 N -0.627 5.627 15 C -0.236 4.236 16 H 0.081 0.919 17 C -0.066 4.066 18 N -0.951 5.951 19 Si 0.973 3.027 20 H -0.276 1.276 21 H -0.298 1.298 22 H -0.281 1.281 23 C 0.127 3.873 24 C -0.079 4.079 25 H 0.110 0.890 26 C -0.103 4.103 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.409 0.591 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.021 0.979 40 H -0.008 1.008 41 H 0.243 0.757 42 H 0.025 0.975 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 16.142 -1.328 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.134 4.134 3 C -0.187 4.187 4 C 0.299 3.701 5 O -0.465 6.465 6 N -0.368 5.368 7 C 0.054 3.946 8 H 0.101 0.899 9 C -0.157 4.157 10 C -0.131 4.131 11 C -0.122 4.122 12 H 0.083 0.917 13 C 0.077 3.923 14 N -0.354 5.354 15 C -0.366 4.366 16 H 0.098 0.902 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.801 3.199 20 H -0.202 1.202 21 H -0.224 1.224 22 H -0.207 1.207 23 C 0.003 3.997 24 C -0.099 4.099 25 H 0.128 0.872 26 C -0.141 4.141 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.245 0.755 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.010 0.990 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.424 16.398 -0.902 17.296 hybrid contribution 0.056 -1.663 -0.819 1.855 sum -5.369 14.735 -1.720 15.777 Atomic orbital electron populations 1.21786 0.91257 1.03234 1.03474 1.21388 0.98885 0.97698 0.95458 1.21597 1.00818 0.93721 1.02577 1.21347 0.79081 0.81551 0.88111 1.90652 1.39924 1.67158 1.48813 1.46160 1.53235 1.11943 1.25436 1.20598 0.93071 0.93169 0.87810 0.89920 1.21640 0.96910 0.98948 0.98208 1.20815 0.98266 0.97012 0.96960 1.21543 0.95721 0.95787 0.99160 0.91725 1.20730 0.85394 0.90501 0.95710 1.45349 1.09749 1.32762 1.47551 1.19425 0.96633 1.04197 1.16315 0.90151 1.25547 0.96343 1.02382 1.01565 1.70186 1.06534 1.43061 1.40266 0.85239 0.76780 0.79545 0.78298 1.20166 1.22420 1.20705 1.22413 0.94891 0.90484 0.91908 1.22237 0.94102 0.95366 0.98185 0.87151 1.21582 0.98575 0.95741 0.98250 0.89428 0.91462 0.92761 0.86984 0.93535 0.89600 0.93185 0.75530 0.92691 0.93196 0.90371 0.92634 0.96128 0.98988 0.94734 0.95717 0.92947 0.92819 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.09 71.98 0.65 -1.22 16 2 C -0.11 -2.01 3.26 -11.54 -0.04 -2.05 16 3 C -0.13 -2.29 8.48 71.98 0.61 -1.68 16 4 C 0.51 13.28 7.13 87.66 0.62 13.91 16 5 O -0.59 -19.84 15.64 -3.02 -0.05 -19.89 16 6 N -0.72 -17.97 4.95 -444.46 -2.20 -20.17 16 7 C 0.16 4.57 2.39 44.59 0.11 4.67 16 8 H 0.08 2.47 7.57 -2.39 -0.02 2.45 16 9 C -0.12 -3.89 5.35 30.26 0.16 -3.72 16 10 C -0.09 -2.97 5.29 29.85 0.16 -2.82 16 11 C -0.10 -3.74 2.77 -11.00 -0.03 -3.77 16 12 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 13 C 0.20 9.83 4.34 86.33 0.37 10.21 16 14 N -0.63 -31.44 2.96 -685.28 -2.03 -33.47 16 15 C -0.24 -13.07 10.29 84.03 0.87 -12.20 16 16 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 17 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 18 N -0.95 -57.25 10.34 21.65 0.22 -57.03 16 19 Si 0.97 45.60 29.55 68.60 2.03 47.62 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 C 0.13 4.93 6.65 86.76 0.58 5.51 16 24 C -0.08 -2.52 3.68 -9.45 -0.03 -2.55 16 25 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 26 C -0.10 -3.11 4.28 30.47 0.13 -2.98 16 27 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.07 0.83 7.57 -2.39 -0.02 0.82 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 32 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 34 H 0.41 8.69 8.03 -92.71 -0.74 7.95 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.91 6.66 -2.39 -0.02 1.89 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.02 1.12 5.66 -2.39 -0.01 1.10 16 40 H -0.01 -0.46 7.50 -2.39 -0.02 -0.48 16 41 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 42 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.05 1.91 7.98 -2.39 -0.02 1.90 16 44 H 0.05 2.00 7.18 -2.39 -0.02 1.98 16 45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -69.47 343.29 2.81 -66.66 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.21 Total: 18.21 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 4.63 Total: -1.94 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -4.01 Total: -110.66 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.47 2.81 -66.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979525573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.745 kcal (2) G-P(sol) polarization free energy of solvation -69.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds