Wall clock time and date at job start Tue Mar 31 2020 02:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46876 * 2 1 4 4 C 1.50700 * 109.47208 * 119.99865 * 2 1 3 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 2 1 6 6 N 1.34777 * 119.99675 * 180.27843 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 H 1.09000 * 109.03558 * 36.03977 * 7 6 4 9 9 C 1.52520 * 109.04530 * 277.14303 * 7 6 4 10 10 C 1.53817 * 111.71101 * 293.49138 * 9 7 6 11 11 C 1.51625 * 107.02340 * 302.45936 * 10 9 7 12 12 H 1.08994 * 111.26793 * 304.34746 * 11 10 9 13 13 C 1.53061 * 116.66577 * 176.23380 * 11 10 9 14 14 N 1.48659 * 103.44426 * 204.13125 * 13 11 10 15 15 C 1.36939 * 125.77898 * 204.37947 * 14 13 11 16 16 H 1.08000 * 119.99740 * 179.97438 * 15 14 13 17 17 C 1.38812 * 120.00318 * 359.97438 * 15 14 13 18 18 N 1.31615 * 119.99731 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99842 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47222 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47139 * 119.99695 * 19 17 15 22 22 H 1.48504 * 109.46962 * 239.99622 * 19 17 15 23 23 C 1.48238 * 108.43600 * 24.37281 * 14 13 11 24 24 C 1.52333 * 105.86079 * 3.18948 * 23 14 13 25 25 H 1.09009 * 109.87525 * 88.13524 * 24 23 14 26 26 C 1.51437 * 117.46063 * 214.65955 * 24 23 14 27 27 H 1.08998 * 109.46846 * 299.99685 * 1 2 3 28 28 H 1.08996 * 109.47100 * 59.99748 * 1 2 3 29 29 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46846 * 240.00315 * 2 1 3 31 31 H 1.09006 * 109.47458 * 59.99925 * 3 2 1 32 32 H 1.09004 * 109.47239 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47323 * 300.00275 * 3 2 1 34 34 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 35 35 H 1.09003 * 109.03187 * 54.06929 * 9 7 6 36 36 H 1.09008 * 109.03827 * 172.91663 * 9 7 6 37 37 H 1.09001 * 109.94533 * 183.08017 * 10 9 7 38 38 H 1.09004 * 110.00999 * 61.87474 * 10 9 7 39 39 H 1.09000 * 110.62975 * 85.63716 * 13 11 10 40 40 H 1.09006 * 110.62767 * 322.61506 * 13 11 10 41 41 H 0.97004 * 119.99292 * 180.02562 * 18 17 15 42 42 H 1.08994 * 110.17494 * 244.09347 * 23 14 13 43 43 H 1.09000 * 110.17346 * 122.28471 * 23 14 13 44 44 H 1.09003 * 109.93791 * 59.41207 * 26 24 23 45 45 H 1.09000 * 109.94079 * 298.18102 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.2442 -1.1709 2.0291 6 7 3.3575 -0.8286 1.4465 7 6 3.8458 -1.5139 2.6457 8 1 3.1810 -2.3467 2.8747 9 6 3.8373 -0.5359 3.8160 10 6 4.8577 0.5979 3.6175 11 6 6.2160 -0.0529 3.4430 12 1 6.4528 -0.7052 4.2835 13 6 7.3907 0.8800 3.1390 14 7 8.3674 -0.0062 2.4530 15 6 9.7214 0.1894 2.3931 16 1 10.3463 -0.5173 1.8673 17 6 10.2908 1.2959 3.0081 18 7 9.5292 2.1573 3.6485 19 14 12.1378 1.5629 2.9257 20 1 12.7634 0.4602 2.1524 21 1 12.4213 2.8589 2.2584 22 1 12.6971 1.5816 4.3013 23 6 7.6273 -1.1376 1.8450 24 6 6.1534 -0.8651 2.1172 25 1 5.7359 -0.2529 1.3177 26 6 5.2580 -2.0595 2.3721 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 3.9878 -0.4599 0.8079 35 1 2.8408 -0.1046 3.9117 36 1 4.0791 -1.0753 4.7319 37 1 4.8664 1.2477 4.4926 38 1 4.6052 1.1755 2.7283 39 1 7.8145 1.2771 4.0615 40 1 7.0776 1.6895 2.4795 41 1 9.9271 2.9308 4.0780 42 1 7.9279 -2.0765 2.3096 43 1 7.8108 -1.1730 0.7711 44 1 5.6165 -2.6146 3.2390 45 1 5.2430 -2.7068 1.4952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979525575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:23 Heat of formation + Delta-G solvation = -31.097542 kcal Electronic energy + Delta-G solvation = -23222.492286 eV Core-core repulsion = 20046.621159 eV Total energy + Delta-G solvation = -3175.871127 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.44744 -38.85281 -35.70017 -34.55918 -33.12735 -31.83061 -30.57984 -28.87951 -27.25658 -26.27918 -25.12413 -23.66709 -21.97545 -20.62663 -20.20419 -19.77877 -18.86333 -17.25852 -16.74553 -15.94078 -15.45858 -14.89074 -14.70176 -14.45350 -13.90024 -13.81288 -13.56128 -13.25130 -12.94497 -12.63845 -12.44869 -12.40422 -12.08414 -12.03846 -11.90493 -11.47201 -11.32465 -11.23490 -11.16319 -11.00112 -10.84522 -10.74762 -10.61546 -10.03916 -9.91129 -9.82558 -9.67654 -9.52027 -9.23090 -8.87346 -8.65576 -6.82520 -5.64340 -3.05169 2.67410 3.24039 3.39638 3.45174 3.47622 4.48205 4.56533 4.71637 4.80496 4.87511 4.92249 5.06775 5.23958 5.34002 5.37363 5.43141 5.52576 5.57488 5.65363 5.65768 5.69304 5.73975 5.78855 5.85684 5.99443 6.03471 6.08007 6.16374 6.21293 6.26009 6.26533 6.40273 6.54444 6.61243 6.66371 6.68184 6.86025 7.02698 7.54267 7.56843 7.62770 7.86831 8.27218 8.34218 9.21172 9.82486 10.49162 11.40095 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.003953 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.769319 B = 7081.830029 C = 7284.128530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.117 4.117 3 C -0.145 4.145 4 C 0.515 3.485 5 O -0.547 6.547 6 N -0.720 5.720 7 C 0.150 3.850 8 H 0.081 0.919 9 C -0.126 4.126 10 C -0.098 4.098 11 C -0.114 4.114 12 H 0.070 0.930 13 C 0.164 3.836 14 N -0.608 5.608 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.143 3.857 24 C -0.106 4.106 25 H 0.063 0.937 26 C -0.110 4.110 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.011 0.989 41 H 0.250 0.750 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.079 0.921 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 -4.406 -5.765 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.138 4.138 3 C -0.203 4.203 4 C 0.302 3.698 5 O -0.425 6.425 6 N -0.373 5.373 7 C 0.046 3.954 8 H 0.099 0.901 9 C -0.164 4.164 10 C -0.136 4.136 11 C -0.134 4.134 12 H 0.088 0.912 13 C 0.040 3.960 14 N -0.335 5.335 15 C -0.349 4.349 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.571 5.571 19 Si 0.743 3.257 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.017 3.983 24 C -0.126 4.126 25 H 0.081 0.919 26 C -0.148 4.148 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.029 0.971 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.041 0.959 44 H 0.098 0.902 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.328 -4.607 -5.123 16.805 hybrid contribution 1.342 0.372 -0.446 1.462 sum -13.987 -4.234 -5.569 15.639 Atomic orbital electron populations 1.21593 0.92679 1.02617 1.01960 1.21317 0.98237 0.97444 0.96814 1.21799 1.01551 0.94060 1.02881 1.20669 0.82344 0.79320 0.87493 1.90671 1.55443 1.48913 1.47432 1.46287 1.06902 1.58726 1.25346 1.21030 0.95165 0.94620 0.84564 0.90139 1.21907 0.99641 0.97281 0.97614 1.21238 0.94142 0.96733 1.01482 1.22383 0.95440 0.99262 0.96298 0.91179 1.21631 0.85619 0.89787 0.99010 1.45133 1.02772 1.23914 1.61634 1.19138 0.81305 1.06211 1.28224 0.90543 1.24766 0.98022 0.97293 1.00690 1.69831 1.32680 1.14417 1.40150 0.86026 0.84842 0.77564 0.77243 1.20586 1.21814 1.21792 1.20976 0.89501 0.91998 0.95780 1.21772 0.95578 0.96600 0.98602 0.91860 1.21601 0.93201 0.97744 1.02247 0.91986 0.92232 0.92121 0.88729 0.91970 0.91887 0.91491 0.76365 0.92048 0.91459 0.92000 0.92332 0.87900 0.97084 0.93880 0.95957 0.95929 0.90241 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.48 37.16 0.32 -0.89 16 2 C -0.12 -1.10 3.26 -91.77 -0.30 -1.40 16 3 C -0.15 -1.24 9.09 37.16 0.34 -0.91 16 4 C 0.52 6.48 7.02 -10.98 -0.08 6.41 16 5 O -0.55 -8.79 15.52 5.55 0.09 -8.71 16 6 N -0.72 -8.53 4.56 -53.62 -0.24 -8.77 16 7 C 0.15 1.93 2.68 -67.74 -0.18 1.75 16 8 H 0.08 1.09 7.59 -51.93 -0.39 0.69 16 9 C -0.13 -1.72 5.41 -26.55 -0.14 -1.86 16 10 C -0.10 -1.49 5.57 -27.00 -0.15 -1.64 16 11 C -0.11 -2.06 2.49 -89.89 -0.22 -2.29 16 12 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 13 C 0.16 3.87 5.52 -2.82 -0.02 3.86 16 14 N -0.61 -15.36 3.45 -170.42 -0.59 -15.94 16 15 C -0.22 -6.12 10.30 -15.06 -0.16 -6.27 16 16 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 17 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 18 N -0.92 -26.75 10.11 55.49 0.56 -26.19 16 19 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C 0.14 2.88 6.98 -3.43 -0.02 2.86 16 24 C -0.11 -1.72 2.23 -90.36 -0.20 -1.92 16 25 H 0.06 0.98 6.14 -51.92 -0.32 0.66 16 26 C -0.11 -1.43 5.37 -27.08 -0.15 -1.57 16 27 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.40 4.32 6.23 -40.82 -0.25 4.06 16 35 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 36 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.89 7.86 -51.93 -0.41 0.48 16 39 H 0.10 2.78 5.93 -51.93 -0.31 2.48 16 40 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -31.18 343.41 -9.03 -40.20 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.93 Total: 1.57 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.06 Total: -4.32 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.27 Total: -50.91 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.18 -9.03 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979525575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.104 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds