Wall clock time and date at job start Tue Mar 31 2020 02:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46876 * 2 1 4 4 C 1.50700 * 109.47208 * 119.99865 * 2 1 3 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 2 1 6 6 N 1.34777 * 119.99675 * 180.27843 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 H 1.09000 * 109.03558 * 36.03977 * 7 6 4 9 9 C 1.52520 * 109.04530 * 277.14303 * 7 6 4 10 10 C 1.53817 * 111.71101 * 293.49138 * 9 7 6 11 11 C 1.51625 * 107.02340 * 302.45936 * 10 9 7 12 12 H 1.08994 * 111.26793 * 304.34746 * 11 10 9 13 13 C 1.53061 * 116.66577 * 176.23380 * 11 10 9 14 14 N 1.48659 * 103.44426 * 204.13125 * 13 11 10 15 15 C 1.36939 * 125.77898 * 204.37947 * 14 13 11 16 16 H 1.08000 * 119.99740 * 179.97438 * 15 14 13 17 17 C 1.38812 * 120.00318 * 359.97438 * 15 14 13 18 18 N 1.31615 * 119.99731 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99842 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47222 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47139 * 119.99695 * 19 17 15 22 22 H 1.48504 * 109.46962 * 239.99622 * 19 17 15 23 23 C 1.48238 * 108.43600 * 24.37281 * 14 13 11 24 24 C 1.52333 * 105.86079 * 3.18948 * 23 14 13 25 25 H 1.09009 * 109.87525 * 88.13524 * 24 23 14 26 26 C 1.51437 * 117.46063 * 214.65955 * 24 23 14 27 27 H 1.08998 * 109.46846 * 299.99685 * 1 2 3 28 28 H 1.08996 * 109.47100 * 59.99748 * 1 2 3 29 29 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46846 * 240.00315 * 2 1 3 31 31 H 1.09006 * 109.47458 * 59.99925 * 3 2 1 32 32 H 1.09004 * 109.47239 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47323 * 300.00275 * 3 2 1 34 34 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 35 35 H 1.09003 * 109.03187 * 54.06929 * 9 7 6 36 36 H 1.09008 * 109.03827 * 172.91663 * 9 7 6 37 37 H 1.09001 * 109.94533 * 183.08017 * 10 9 7 38 38 H 1.09004 * 110.00999 * 61.87474 * 10 9 7 39 39 H 1.09000 * 110.62975 * 85.63716 * 13 11 10 40 40 H 1.09006 * 110.62767 * 322.61506 * 13 11 10 41 41 H 0.97004 * 119.99292 * 180.02562 * 18 17 15 42 42 H 1.08994 * 110.17494 * 244.09347 * 23 14 13 43 43 H 1.09000 * 110.17346 * 122.28471 * 23 14 13 44 44 H 1.09003 * 109.93791 * 59.41207 * 26 24 23 45 45 H 1.09000 * 109.94079 * 298.18102 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.2442 -1.1709 2.0291 6 7 3.3575 -0.8286 1.4465 7 6 3.8458 -1.5139 2.6457 8 1 3.1810 -2.3467 2.8747 9 6 3.8373 -0.5359 3.8160 10 6 4.8577 0.5979 3.6175 11 6 6.2160 -0.0529 3.4430 12 1 6.4528 -0.7052 4.2835 13 6 7.3907 0.8800 3.1390 14 7 8.3674 -0.0062 2.4530 15 6 9.7214 0.1894 2.3931 16 1 10.3463 -0.5173 1.8673 17 6 10.2908 1.2959 3.0081 18 7 9.5292 2.1573 3.6485 19 14 12.1378 1.5629 2.9257 20 1 12.7634 0.4602 2.1524 21 1 12.4213 2.8589 2.2584 22 1 12.6971 1.5816 4.3013 23 6 7.6273 -1.1376 1.8450 24 6 6.1534 -0.8651 2.1172 25 1 5.7359 -0.2529 1.3177 26 6 5.2580 -2.0595 2.3721 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 3.9878 -0.4599 0.8079 35 1 2.8408 -0.1046 3.9117 36 1 4.0791 -1.0753 4.7319 37 1 4.8664 1.2477 4.4926 38 1 4.6052 1.1755 2.7283 39 1 7.8145 1.2771 4.0615 40 1 7.0776 1.6895 2.4795 41 1 9.9271 2.9308 4.0780 42 1 7.9279 -2.0765 2.3096 43 1 7.8108 -1.1730 0.7711 44 1 5.6165 -2.6146 3.2390 45 1 5.2430 -2.7068 1.4952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979525575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:22 Heat of formation + Delta-G solvation = -49.677395 kcal Electronic energy + Delta-G solvation = -23223.297969 eV Core-core repulsion = 20046.621159 eV Total energy + Delta-G solvation = -3176.676810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58242 -40.11892 -37.16552 -35.39976 -34.66961 -33.40171 -31.94468 -30.50029 -28.04717 -27.73278 -26.89164 -24.59678 -23.52712 -21.93009 -21.46200 -21.14793 -20.07485 -18.76994 -18.16937 -17.14192 -16.72874 -16.41964 -15.85851 -15.68742 -15.53680 -14.96969 -14.74627 -14.62227 -14.23135 -13.86254 -13.70240 -13.45106 -13.37583 -13.15055 -12.99976 -12.86181 -12.80335 -12.61831 -12.54283 -12.34026 -12.03305 -11.98348 -11.91670 -11.90184 -11.70078 -11.40183 -10.98646 -10.78391 -10.67700 -10.65637 -9.95315 -8.85830 -7.75357 -5.18570 1.47024 1.47589 1.57879 1.71612 2.31098 2.50369 3.34757 3.56875 3.63518 3.71669 3.80746 3.86035 4.03515 4.08856 4.16198 4.34960 4.46331 4.49054 4.53699 4.60857 4.72336 4.76936 4.78142 4.85758 4.90865 4.96184 4.97511 5.00517 5.08273 5.10734 5.15162 5.19553 5.27234 5.33616 5.36125 5.40840 5.48719 5.57790 5.63798 5.76295 5.86097 6.31253 6.62346 7.11366 7.32207 7.78793 8.45179 9.26973 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.003953 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.769319 B = 7081.830029 C = 7284.128530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.112 4.112 3 C -0.143 4.143 4 C 0.512 3.488 5 O -0.585 6.585 6 N -0.715 5.715 7 C 0.155 3.845 8 H 0.082 0.918 9 C -0.117 4.117 10 C -0.089 4.089 11 C -0.103 4.103 12 H 0.063 0.937 13 C 0.169 3.831 14 N -0.632 5.632 15 C -0.236 4.236 16 H 0.080 0.920 17 C -0.069 4.069 18 N -0.949 5.949 19 Si 0.977 3.023 20 H -0.267 1.267 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.137 3.863 24 C -0.089 4.089 25 H 0.073 0.927 26 C -0.098 4.098 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.408 0.592 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.064 0.936 40 H -0.012 1.012 41 H 0.245 0.755 42 H 0.027 0.973 43 H 0.028 0.972 44 H 0.083 0.917 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.614 -5.457 -7.251 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.133 4.133 3 C -0.201 4.201 4 C 0.300 3.700 5 O -0.465 6.465 6 N -0.367 5.367 7 C 0.051 3.949 8 H 0.100 0.900 9 C -0.156 4.156 10 C -0.127 4.127 11 C -0.122 4.122 12 H 0.082 0.918 13 C 0.044 3.956 14 N -0.359 5.359 15 C -0.365 4.365 16 H 0.098 0.902 17 C -0.261 4.261 18 N -0.599 5.599 19 Si 0.806 3.194 20 H -0.191 1.191 21 H -0.220 1.220 22 H -0.220 1.220 23 C 0.013 3.987 24 C -0.108 4.108 25 H 0.092 0.908 26 C -0.136 4.136 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.245 0.755 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.006 0.994 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.102 0.898 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.996 -5.680 -6.638 18.226 hybrid contribution 1.560 0.700 0.005 1.710 sum -14.435 -4.980 -6.633 16.649 Atomic orbital electron populations 1.21592 0.92622 1.02139 1.02350 1.21369 0.98236 0.97716 0.95985 1.21799 1.01517 0.93474 1.03275 1.21258 0.82058 0.78693 0.87972 1.90657 1.56313 1.50599 1.48952 1.46250 1.07024 1.58342 1.25075 1.20921 0.94976 0.94426 0.84625 0.90040 1.21822 0.98474 0.96746 0.98542 1.21156 0.92860 0.97224 1.01478 1.22149 0.94645 0.98143 0.97279 0.91825 1.21363 0.87357 0.90348 0.96512 1.45470 1.02626 1.25418 1.62354 1.19511 0.82960 1.06217 1.27786 0.90248 1.25590 1.02226 0.97387 1.00894 1.70094 1.34131 1.14672 1.41018 0.85020 0.79946 0.77472 0.76965 1.19127 1.22003 1.22006 1.21179 0.91428 0.90468 0.95667 1.21663 0.93816 0.97865 0.97425 0.90849 1.21532 0.92069 0.96494 1.03485 0.93601 0.89822 0.93040 0.86367 0.93222 0.91885 0.89510 0.75515 0.92537 0.90753 0.92464 0.92073 0.91833 0.99438 0.94542 0.95513 0.95344 0.89822 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.48 71.98 0.61 -1.53 16 2 C -0.11 -1.83 3.26 -11.54 -0.04 -1.86 16 3 C -0.14 -2.11 9.09 71.98 0.65 -1.45 16 4 C 0.51 11.90 7.02 87.66 0.62 12.51 16 5 O -0.58 -18.12 15.52 -3.04 -0.05 -18.17 16 6 N -0.71 -15.15 4.56 -441.94 -2.01 -17.17 16 7 C 0.16 3.60 2.68 45.12 0.12 3.72 16 8 H 0.08 1.99 7.59 -2.39 -0.02 1.97 16 9 C -0.12 -3.00 5.41 30.71 0.17 -2.83 16 10 C -0.09 -2.64 5.57 30.42 0.17 -2.47 16 11 C -0.10 -3.66 2.49 -10.32 -0.03 -3.69 16 12 H 0.06 2.37 8.03 -2.39 -0.02 2.35 16 13 C 0.17 8.19 5.52 85.98 0.47 8.67 16 14 N -0.63 -32.21 3.45 -693.07 -2.39 -34.60 16 15 C -0.24 -13.21 10.30 84.03 0.87 -12.34 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 18 N -0.95 -56.80 10.11 21.65 0.22 -56.58 16 19 Si 0.98 45.75 29.55 68.60 2.03 47.78 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 C 0.14 5.35 6.98 85.82 0.60 5.95 16 24 C -0.09 -2.69 2.23 -10.63 -0.02 -2.72 16 25 H 0.07 2.10 6.14 -2.38 -0.01 2.09 16 26 C -0.10 -2.25 5.37 30.37 0.16 -2.09 16 27 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 30 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 0.93 7.56 -2.38 -0.02 0.91 16 33 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.41 7.57 6.23 -92.71 -0.58 7.00 16 35 H 0.06 1.54 7.94 -2.39 -0.02 1.52 16 36 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.78 7.86 -2.39 -0.02 1.77 16 39 H 0.06 3.60 5.93 -2.39 -0.01 3.59 16 40 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 41 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.03 1.03 8.08 -2.39 -0.02 1.01 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.93 8.04 -2.39 -0.02 1.91 16 45 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.98 343.41 2.99 -65.99 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.38 Total: 16.31 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.82 Total: -3.57 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -4.19 Total: -108.35 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.05 Total: -18.17 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -68.98 2.99 -65.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979525575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.317 kcal (2) G-P(sol) polarization free energy of solvation -68.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds