Wall clock time and date at job start Tue Mar 31 2020 02:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50706 * 109.47103 * 119.99406 * 2 1 3 5 5 O 1.21274 * 120.00042 * 239.72235 * 4 2 1 6 6 N 1.34777 * 119.99766 * 59.99771 * 4 2 1 7 7 C 1.46496 * 120.00266 * 179.97438 * 6 4 2 8 8 H 1.09001 * 109.02798 * 36.04640 * 7 6 4 9 9 C 1.52522 * 109.04374 * 277.16147 * 7 6 4 10 10 C 1.53813 * 111.70324 * 185.39050 * 9 7 6 11 11 C 1.51620 * 107.02055 * 57.53576 * 10 9 7 12 12 H 1.08996 * 110.50153 * 55.19905 * 11 10 9 13 13 C 1.53062 * 116.67734 * 183.73486 * 11 10 9 14 14 N 1.48667 * 103.44215 * 155.89285 * 13 11 10 15 15 C 1.36930 * 125.78518 * 155.65676 * 14 13 11 16 16 H 1.07999 * 120.00382 * 179.97438 * 15 14 13 17 17 C 1.38816 * 120.00154 * 359.97438 * 15 14 13 18 18 N 1.31622 * 119.99839 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00187 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47044 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46735 * 120.00596 * 19 17 15 22 22 H 1.48500 * 109.47142 * 239.99994 * 19 17 15 23 23 C 1.48242 * 108.42824 * 335.62460 * 14 13 11 24 24 C 1.52321 * 105.86965 * 356.81262 * 23 14 13 25 25 H 1.09001 * 110.24855 * 272.17696 * 24 23 14 26 26 C 1.51446 * 117.45185 * 145.31296 * 24 23 14 27 27 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 30 30 H 1.09000 * 109.47140 * 239.99453 * 2 1 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 0.96999 * 120.00043 * 0.02562 * 6 4 2 35 35 H 1.08995 * 109.03688 * 305.96218 * 9 7 6 36 36 H 1.09004 * 109.03796 * 64.82053 * 9 7 6 37 37 H 1.09002 * 109.94751 * 298.15679 * 10 9 7 38 38 H 1.09005 * 110.01692 * 176.95530 * 10 9 7 39 39 H 1.08993 * 110.63016 * 274.38032 * 13 11 10 40 40 H 1.08999 * 110.62693 * 37.40674 * 13 11 10 41 41 H 0.96994 * 120.00122 * 180.02562 * 18 17 15 42 42 H 1.09007 * 110.16909 * 237.70762 * 23 14 13 43 43 H 1.09006 * 110.17152 * 115.91638 * 23 14 13 44 44 H 1.09007 * 109.93856 * 61.85196 * 26 24 23 45 45 H 1.09005 * 110.00855 * 300.66072 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7337 -0.1223 2.0263 6 7 1.7067 -2.0006 1.4440 7 6 2.1954 -2.6913 2.6399 8 1 2.2119 -1.9896 3.4738 9 6 3.6138 -3.1893 2.3822 10 6 4.1390 -4.0402 3.5510 11 6 3.1677 -5.1899 3.7345 12 1 3.0473 -5.7405 2.8016 13 6 3.4351 -6.1345 4.9088 14 7 2.0983 -6.7197 5.1928 15 6 1.8642 -7.9224 5.8043 16 1 0.8504 -8.2582 5.9650 17 6 2.9300 -8.7100 6.2176 18 7 4.1655 -8.3005 6.0222 19 14 2.6107 -10.3503 7.0524 20 1 1.1467 -10.5778 7.1529 21 1 3.2270 -11.4402 6.2540 22 1 3.2047 -10.3370 8.4133 23 6 1.0617 -5.7802 4.7026 24 6 1.8153 -4.5634 4.1816 25 1 1.9852 -3.8508 4.9888 26 6 1.2396 -3.8487 2.9768 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.1493 -2.4721 0.8053 35 1 3.6197 -3.7913 1.4736 36 1 4.2720 -2.3316 2.2431 37 1 4.1798 -3.4393 4.4595 38 1 5.1311 -4.4256 3.3156 39 1 4.1419 -6.9130 4.6222 40 1 3.8025 -5.5796 5.7720 41 1 4.9102 -8.8509 6.3106 42 1 0.3998 -5.4914 5.5191 43 1 0.4880 -6.2401 3.8978 44 1 0.2506 -3.4569 3.2145 45 1 1.1743 -4.5348 2.1323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979525578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:27 Heat of formation + Delta-G solvation = -33.749575 kcal Electronic energy + Delta-G solvation = -22700.911476 eV Core-core repulsion = 19524.925348 eV Total energy + Delta-G solvation = -3175.986128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.31701 -38.93623 -35.74754 -34.67069 -33.43857 -31.80381 -30.56315 -28.73665 -27.37205 -26.24919 -25.09881 -23.49084 -22.01402 -20.56879 -20.24520 -19.73715 -19.21618 -17.30833 -16.69846 -16.04549 -15.54405 -14.90450 -14.52018 -14.36867 -14.18028 -13.84527 -13.74153 -13.27167 -13.07178 -12.58855 -12.46867 -12.27134 -12.10363 -12.01479 -11.83683 -11.59378 -11.44949 -11.33381 -11.30871 -10.92583 -10.82059 -10.64671 -10.45703 -10.01660 -9.98312 -9.86236 -9.72244 -9.53845 -9.22303 -8.93380 -8.62811 -6.79431 -5.61339 -3.02162 2.59084 3.11072 3.41642 3.46920 3.49563 4.44745 4.51104 4.60297 4.67999 4.82007 4.93665 5.10338 5.23754 5.30167 5.36259 5.41230 5.42656 5.53630 5.55476 5.62584 5.67825 5.71842 5.73845 5.82606 5.84613 6.00153 6.09506 6.18768 6.22899 6.28830 6.31373 6.43208 6.53421 6.59957 6.67318 6.71458 6.89423 7.07650 7.46582 7.58881 7.65654 7.89901 8.19020 8.37148 9.24033 9.85287 10.52394 11.43157 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.048464 B = 0.003305 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.612581 B = 8469.468559 C = 8847.364177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C -0.132 4.132 4 C 0.514 3.486 5 O -0.540 6.540 6 N -0.726 5.726 7 C 0.148 3.852 8 H 0.083 0.917 9 C -0.124 4.124 10 C -0.099 4.099 11 C -0.115 4.115 12 H 0.068 0.932 13 C 0.164 3.836 14 N -0.608 5.608 15 C -0.219 4.219 16 H 0.077 0.923 17 C -0.014 4.014 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.145 3.855 24 C -0.105 4.105 25 H 0.070 0.930 26 C -0.105 4.105 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.398 0.602 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.013 0.987 41 H 0.250 0.750 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.064 0.936 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 15.144 -13.806 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.190 4.190 4 C 0.300 3.700 5 O -0.417 6.417 6 N -0.377 5.377 7 C 0.044 3.956 8 H 0.101 0.899 9 C -0.162 4.162 10 C -0.137 4.137 11 C -0.134 4.134 12 H 0.087 0.913 13 C 0.039 3.961 14 N -0.335 5.335 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.209 4.209 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.020 3.980 24 C -0.124 4.124 25 H 0.088 0.912 26 C -0.144 4.144 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.232 0.768 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.122 0.878 40 H 0.031 0.969 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.082 0.918 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.172 15.395 -13.116 20.876 hybrid contribution -0.439 -1.089 0.154 1.184 sum -5.611 14.306 -12.963 20.104 Atomic orbital electron populations 1.21789 0.92975 1.02528 1.02878 1.21324 0.97555 0.98113 0.96805 1.21603 1.01816 0.93600 1.01967 1.20686 0.80028 0.81768 0.87532 1.90699 1.37597 1.66298 1.47118 1.46224 1.53561 1.11967 1.25902 1.21092 0.93538 0.93744 0.87203 0.89916 1.21887 0.95481 0.99573 0.99284 1.21254 0.98860 0.96158 0.97472 1.22400 0.94264 0.96006 1.00750 0.91341 1.21627 0.88867 0.94305 0.91269 1.45142 1.00487 1.18320 1.69538 1.19134 0.92777 0.93002 1.29842 0.90535 1.24778 0.95271 0.99074 1.01764 1.69830 0.97293 1.37502 1.52478 0.86017 0.77249 0.83517 0.78843 1.20600 1.21818 1.21817 1.20941 0.92006 0.89254 0.95829 1.21717 0.97652 0.96899 0.96148 0.91194 1.21529 0.97751 0.96208 0.98881 0.91495 0.92082 0.92030 0.88653 0.91972 0.92206 0.91948 0.76823 0.92305 0.92092 0.91914 0.91649 0.87844 0.96871 0.93874 0.95833 0.96030 0.91766 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.09 37.16 0.34 -0.57 16 2 C -0.12 -0.94 3.26 -91.77 -0.30 -1.24 16 3 C -0.13 -1.10 8.48 37.16 0.32 -0.79 16 4 C 0.51 6.05 7.08 -10.98 -0.08 5.97 16 5 O -0.54 -8.65 15.57 5.56 0.09 -8.56 16 6 N -0.73 -7.70 4.95 -53.62 -0.27 -7.96 16 7 C 0.15 1.94 2.41 -67.74 -0.16 1.77 16 8 H 0.08 1.25 7.59 -51.93 -0.39 0.86 16 9 C -0.12 -1.72 5.34 -26.55 -0.14 -1.86 16 10 C -0.10 -1.58 5.71 -27.01 -0.15 -1.73 16 11 C -0.11 -2.14 2.50 -89.90 -0.22 -2.37 16 12 H 0.07 1.30 8.01 -51.93 -0.42 0.89 16 13 C 0.16 3.98 5.53 -2.81 -0.02 3.97 16 14 N -0.61 -15.75 3.45 -170.41 -0.59 -16.34 16 15 C -0.22 -6.18 10.30 -15.06 -0.16 -6.33 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 18 N -0.92 -27.14 10.11 55.49 0.56 -26.58 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C 0.15 3.03 6.98 -3.43 -0.02 3.01 16 24 C -0.10 -1.81 2.31 -90.36 -0.21 -2.01 16 25 H 0.07 1.25 7.92 -51.93 -0.41 0.83 16 26 C -0.11 -1.40 5.15 -27.08 -0.14 -1.53 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.33 7.56 -51.93 -0.39 -0.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.40 3.14 8.01 -40.82 -0.33 2.81 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 37 H 0.06 1.03 7.98 -51.93 -0.41 0.61 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.10 2.84 5.93 -51.93 -0.31 2.53 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 LS Contribution 347.37 15.07 5.23 5.23 Total: -1.00 -32.14 347.37 -9.15 -41.29 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.11 Total: -0.12 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.05 Total: -4.20 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.29 Total: -50.88 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.14 -9.15 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979525578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.539 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds