Wall clock time and date at job start Tue Mar 31 2020 02:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50706 * 109.47103 * 119.99406 * 2 1 3 5 5 O 1.21274 * 120.00042 * 239.72235 * 4 2 1 6 6 N 1.34777 * 119.99766 * 59.99771 * 4 2 1 7 7 C 1.46496 * 120.00266 * 179.97438 * 6 4 2 8 8 H 1.09001 * 109.02798 * 36.04640 * 7 6 4 9 9 C 1.52522 * 109.04374 * 277.16147 * 7 6 4 10 10 C 1.53813 * 111.70324 * 185.39050 * 9 7 6 11 11 C 1.51620 * 107.02055 * 57.53576 * 10 9 7 12 12 H 1.08996 * 110.50153 * 55.19905 * 11 10 9 13 13 C 1.53062 * 116.67734 * 183.73486 * 11 10 9 14 14 N 1.48667 * 103.44215 * 155.89285 * 13 11 10 15 15 C 1.36930 * 125.78518 * 155.65676 * 14 13 11 16 16 H 1.07999 * 120.00382 * 179.97438 * 15 14 13 17 17 C 1.38816 * 120.00154 * 359.97438 * 15 14 13 18 18 N 1.31622 * 119.99839 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00187 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47044 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46735 * 120.00596 * 19 17 15 22 22 H 1.48500 * 109.47142 * 239.99994 * 19 17 15 23 23 C 1.48242 * 108.42824 * 335.62460 * 14 13 11 24 24 C 1.52321 * 105.86965 * 356.81262 * 23 14 13 25 25 H 1.09001 * 110.24855 * 272.17696 * 24 23 14 26 26 C 1.51446 * 117.45185 * 145.31296 * 24 23 14 27 27 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 30 30 H 1.09000 * 109.47140 * 239.99453 * 2 1 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 0.96999 * 120.00043 * 0.02562 * 6 4 2 35 35 H 1.08995 * 109.03688 * 305.96218 * 9 7 6 36 36 H 1.09004 * 109.03796 * 64.82053 * 9 7 6 37 37 H 1.09002 * 109.94751 * 298.15679 * 10 9 7 38 38 H 1.09005 * 110.01692 * 176.95530 * 10 9 7 39 39 H 1.08993 * 110.63016 * 274.38032 * 13 11 10 40 40 H 1.08999 * 110.62693 * 37.40674 * 13 11 10 41 41 H 0.96994 * 120.00122 * 180.02562 * 18 17 15 42 42 H 1.09007 * 110.16909 * 237.70762 * 23 14 13 43 43 H 1.09006 * 110.17152 * 115.91638 * 23 14 13 44 44 H 1.09007 * 109.93856 * 61.85196 * 26 24 23 45 45 H 1.09005 * 110.00855 * 300.66072 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7337 -0.1223 2.0263 6 7 1.7067 -2.0006 1.4440 7 6 2.1954 -2.6913 2.6399 8 1 2.2119 -1.9896 3.4738 9 6 3.6138 -3.1893 2.3822 10 6 4.1390 -4.0402 3.5510 11 6 3.1677 -5.1899 3.7345 12 1 3.0473 -5.7405 2.8016 13 6 3.4351 -6.1345 4.9088 14 7 2.0983 -6.7197 5.1928 15 6 1.8642 -7.9224 5.8043 16 1 0.8504 -8.2582 5.9650 17 6 2.9300 -8.7100 6.2176 18 7 4.1655 -8.3005 6.0222 19 14 2.6107 -10.3503 7.0524 20 1 1.1467 -10.5778 7.1529 21 1 3.2270 -11.4402 6.2540 22 1 3.2047 -10.3370 8.4133 23 6 1.0617 -5.7802 4.7026 24 6 1.8153 -4.5634 4.1816 25 1 1.9852 -3.8508 4.9888 26 6 1.2396 -3.8487 2.9768 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.1493 -2.4721 0.8053 35 1 3.6197 -3.7913 1.4736 36 1 4.2720 -2.3316 2.2431 37 1 4.1798 -3.4393 4.4595 38 1 5.1311 -4.4256 3.3156 39 1 4.1419 -6.9130 4.6222 40 1 3.8025 -5.5796 5.7720 41 1 4.9102 -8.8509 6.3106 42 1 0.3998 -5.4914 5.5191 43 1 0.4880 -6.2401 3.8978 44 1 0.2506 -3.4569 3.2145 45 1 1.1743 -4.5348 2.1323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979525578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:26 Heat of formation + Delta-G solvation = -53.834331 kcal Electronic energy + Delta-G solvation = -22701.782416 eV Core-core repulsion = 19524.925348 eV Total energy + Delta-G solvation = -3176.857068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40155 -40.25186 -37.17403 -35.43009 -34.92512 -33.48074 -31.99064 -30.38148 -28.03393 -27.72715 -26.83634 -24.44783 -23.55059 -21.74450 -21.54098 -21.24497 -20.44198 -18.79247 -18.11053 -17.08395 -16.87991 -16.40636 -15.87023 -15.62367 -15.51749 -15.17439 -14.91122 -14.55204 -14.11922 -13.85451 -13.55140 -13.48688 -13.40264 -13.15214 -13.11418 -12.91543 -12.79124 -12.78201 -12.61718 -12.13247 -12.02394 -11.94241 -11.90774 -11.75484 -11.70338 -11.48234 -11.19545 -10.84156 -10.74125 -10.59797 -9.99822 -8.87673 -7.75927 -5.19820 1.46376 1.47549 1.57872 1.70355 2.21748 2.50215 3.34002 3.57026 3.62640 3.68758 3.74955 3.95051 4.05672 4.09109 4.14111 4.34466 4.41996 4.46912 4.55902 4.57126 4.69390 4.72170 4.78231 4.80089 4.94025 4.95808 4.96771 5.00633 5.06539 5.10422 5.15953 5.21445 5.26194 5.35184 5.36701 5.38474 5.47093 5.55664 5.58245 5.73964 5.84116 6.29650 6.64063 7.09950 7.33956 7.77121 8.44200 9.26715 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.048464 B = 0.003305 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.612581 B = 8469.468559 C = 8847.364177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.509 3.491 5 O -0.589 6.589 6 N -0.712 5.712 7 C 0.155 3.845 8 H 0.061 0.939 9 C -0.113 4.113 10 C -0.094 4.094 11 C -0.101 4.101 12 H 0.072 0.928 13 C 0.167 3.833 14 N -0.633 5.633 15 C -0.235 4.235 16 H 0.081 0.919 17 C -0.072 4.072 18 N -0.950 5.950 19 Si 0.980 3.020 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.295 1.295 23 C 0.140 3.860 24 C -0.091 4.091 25 H 0.061 0.939 26 C -0.091 4.091 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.121 0.879 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.416 0.584 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.068 0.932 40 H -0.018 1.018 41 H 0.245 0.755 42 H 0.024 0.976 43 H 0.035 0.965 44 H 0.085 0.915 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 15.585 -16.125 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.191 4.191 4 C 0.297 3.703 5 O -0.469 6.469 6 N -0.364 5.364 7 C 0.050 3.950 8 H 0.080 0.920 9 C -0.151 4.151 10 C -0.133 4.133 11 C -0.121 4.121 12 H 0.091 0.909 13 C 0.042 3.958 14 N -0.359 5.359 15 C -0.364 4.364 16 H 0.099 0.901 17 C -0.264 4.264 18 N -0.601 5.601 19 Si 0.809 3.191 20 H -0.190 1.190 21 H -0.217 1.217 22 H -0.222 1.222 23 C 0.016 3.984 24 C -0.111 4.111 25 H 0.079 0.921 26 C -0.130 4.130 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.139 0.861 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.253 0.747 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.000 1.000 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.053 0.947 44 H 0.103 0.897 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.222 15.841 -15.476 23.294 hybrid contribution 0.181 -1.209 0.912 1.525 sum -7.042 14.632 -14.564 21.813 Atomic orbital electron populations 1.21802 0.91248 1.03571 1.03246 1.21375 0.98805 0.97369 0.95518 1.21620 1.00834 0.94204 1.02396 1.21436 0.79069 0.81756 0.88069 1.90686 1.39851 1.67342 1.49026 1.46030 1.53323 1.11725 1.25291 1.20809 0.93091 0.93319 0.87750 0.92048 1.21767 0.95860 0.98957 0.98565 1.21195 0.98434 0.95344 0.98292 1.22161 0.95959 0.95651 0.98280 0.90936 1.21377 0.88013 0.94084 0.92284 1.45496 1.02208 1.18669 1.69567 1.19521 0.93053 0.94099 1.29758 0.90104 1.25647 0.95159 1.02633 1.02928 1.70093 0.97939 1.38568 1.53453 0.84974 0.77751 0.79172 0.77230 1.19024 1.21740 1.22175 1.21131 0.91409 0.89769 0.96107 1.21605 0.96284 0.95558 0.97619 0.92090 1.21420 0.98340 0.95946 0.97252 0.89493 0.90718 0.93348 0.86138 0.93567 0.89577 0.93684 0.74706 0.90763 0.92703 0.92820 0.91611 0.91347 0.99984 0.94483 0.95838 0.94665 0.89671 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.09 71.98 0.65 -0.62 16 2 C -0.11 -1.44 3.26 -11.54 -0.04 -1.48 16 3 C -0.13 -1.99 8.48 71.98 0.61 -1.38 16 4 C 0.51 10.97 7.08 87.66 0.62 11.59 16 5 O -0.59 -18.62 15.57 -3.01 -0.05 -18.67 16 6 N -0.71 -12.95 4.95 -441.96 -2.19 -15.14 16 7 C 0.16 3.72 2.41 45.12 0.11 3.83 16 8 H 0.06 1.79 7.59 -2.39 -0.02 1.77 16 9 C -0.11 -2.94 5.34 30.71 0.16 -2.78 16 10 C -0.09 -2.99 5.71 30.42 0.17 -2.81 16 11 C -0.10 -3.76 2.50 -10.32 -0.03 -3.78 16 12 H 0.07 2.66 8.01 -2.39 -0.02 2.64 16 13 C 0.17 8.44 5.53 85.98 0.48 8.91 16 14 N -0.63 -33.30 3.45 -693.06 -2.39 -35.70 16 15 C -0.24 -13.44 10.30 84.04 0.87 -12.57 16 16 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 17 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 18 N -0.95 -57.91 10.11 21.65 0.22 -57.69 16 19 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 23 C 0.14 5.74 6.98 85.82 0.60 6.33 16 24 C -0.09 -3.04 2.31 -10.63 -0.02 -3.07 16 25 H 0.06 2.15 7.92 -2.39 -0.02 2.13 16 26 C -0.09 -2.14 5.15 30.37 0.16 -1.98 16 27 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 0.48 7.56 -2.39 -0.02 0.46 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16 34 H 0.42 4.73 8.01 -92.71 -0.74 3.99 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.54 8.06 -2.39 -0.02 1.52 16 37 H 0.05 1.79 7.98 -2.39 -0.02 1.77 16 38 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.07 3.95 5.93 -2.39 -0.01 3.93 16 40 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 42 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.04 1.36 8.08 -2.38 -0.02 1.34 16 44 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.09 1.79 8.04 -2.38 -0.02 1.77 16 Total: -1.00 -72.87 347.37 2.63 -70.24 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.21 Total: 12.01 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 4.81 Total: -3.47 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -4.36 Total: -108.53 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -72.87 2.63 -70.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979525578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.401 kcal (2) G-P(sol) polarization free energy of solvation -72.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds