Wall clock time and date at job start Tue Mar 31 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47006 * 2 1 4 4 C 1.53000 * 109.46967 * 119.99602 * 2 1 3 5 5 H 1.09005 * 115.56360 * 325.68982 * 4 2 1 6 6 C 1.53002 * 117.49742 * 111.37680 * 4 2 1 7 7 C 1.52996 * 117.50003 * 180.02562 * 4 2 1 8 8 H 1.08999 * 117.51816 * 359.97438 * 7 4 2 9 9 C 1.50696 * 117.50208 * 145.02332 * 7 4 2 10 10 O 1.21279 * 119.99803 * 0.02562 * 9 7 4 11 11 N 1.34777 * 120.00427 * 180.02562 * 9 7 4 12 12 C 1.48205 * 119.97258 * 180.02562 * 11 9 7 13 13 C 1.47137 * 110.34555 * 102.46561 * 12 11 9 14 14 C 1.53244 * 111.81284 * 58.22488 * 13 12 11 15 15 N 1.43460 * 108.26262 * 281.67635 * 14 13 12 16 16 C 1.36932 * 118.94273 * 273.77842 * 15 14 13 17 17 H 1.08001 * 120.00350 * 24.31386 * 16 15 14 18 18 C 1.38822 * 120.00110 * 204.31090 * 16 15 14 19 19 N 1.31613 * 119.99748 * 202.66275 * 18 16 15 20 20 Si 1.86797 * 119.99501 * 22.93875 * 18 16 15 21 21 H 1.48497 * 109.47150 * 265.57844 * 20 18 16 22 22 H 1.48496 * 109.47479 * 25.58644 * 20 18 16 23 23 H 1.48506 * 109.46921 * 145.58433 * 20 18 16 24 24 C 1.48864 * 122.11457 * 93.50466 * 15 14 13 25 25 C 1.43627 * 119.96625 * 359.97438 * 11 9 7 26 26 H 1.09001 * 109.46954 * 300.00504 * 1 2 3 27 27 H 1.09004 * 109.46655 * 60.00003 * 1 2 3 28 28 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47280 * 239.99917 * 2 1 3 30 30 H 1.09001 * 109.46614 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47057 * 299.99724 * 3 2 1 32 32 H 1.08999 * 109.47169 * 59.99849 * 3 2 1 33 33 H 1.08998 * 117.49934 * 0.02562 * 6 4 2 34 34 H 1.08999 * 117.51710 * 214.97375 * 6 4 2 35 35 H 1.09008 * 109.32592 * 222.73160 * 12 11 9 36 36 H 1.08999 * 109.33029 * 342.37435 * 12 11 9 37 37 H 1.09002 * 109.00891 * 178.89769 * 13 12 11 38 38 H 1.09000 * 109.00623 * 297.76428 * 13 12 11 39 39 H 1.09008 * 109.48826 * 162.04275 * 14 13 12 40 40 H 1.08996 * 109.73947 * 41.46501 * 14 13 12 41 41 H 0.97001 * 120.00658 * 5.44994 * 19 18 16 42 42 H 1.09004 * 109.47973 * 80.88239 * 24 15 14 43 43 H 1.09005 * 109.47746 * 200.90053 * 24 15 14 44 44 H 1.09001 * 108.86993 * 149.91025 * 25 11 9 45 45 H 1.08997 * 108.79754 * 31.41630 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.4310 -0.5982 2.1449 6 6 2.7419 -2.0662 1.0515 7 6 3.5550 -0.8275 1.4347 8 1 4.1887 -0.3842 0.6666 9 6 4.0907 -0.7547 2.8413 10 8 3.3281 -0.6172 3.7743 11 7 5.4173 -0.8424 3.0627 12 6 5.9433 -0.7713 4.4464 13 6 6.2956 -2.1157 4.9295 14 6 7.3355 -2.7902 4.0285 15 7 6.6647 -3.2878 2.8621 16 6 6.0924 -4.5310 2.9065 17 1 5.7954 -4.9552 3.8542 18 6 5.8939 -5.2461 1.7333 19 7 4.9815 -6.1934 1.6865 20 14 6.9273 -4.8689 0.2236 21 1 6.2027 -3.9061 -0.6442 22 1 8.2226 -4.2778 0.6453 23 1 7.1779 -6.1234 -0.5307 24 6 6.5656 -2.4936 1.6069 25 6 6.3198 -1.0058 1.9574 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 2.8407 -2.4372 0.0313 34 1 2.5949 -2.8283 1.8168 35 1 6.8306 -0.1382 4.4629 36 1 5.1830 -0.3438 5.0999 37 1 6.6976 -2.0360 5.9396 38 1 5.3964 -2.7313 4.9531 39 1 7.8015 -3.6161 4.5661 40 1 8.0948 -2.0650 3.7358 41 1 4.3942 -6.3392 2.4446 42 1 7.4945 -2.5859 1.0440 43 1 5.7372 -2.8670 1.0049 44 1 7.2729 -0.5407 2.2088 45 1 5.9017 -0.5031 1.0853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000983227444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:06 Heat of formation + Delta-G solvation = -11.761478 kcal Electronic energy + Delta-G solvation = -23893.776185 eV Core-core repulsion = 20718.743532 eV Total energy + Delta-G solvation = -3175.032653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53484 -39.37542 -38.19292 -36.05098 -34.67287 -33.96630 -33.33191 -29.36451 -28.04303 -27.73217 -25.71054 -24.93513 -23.82081 -23.06125 -21.58031 -20.75345 -19.90087 -19.26482 -18.28046 -17.54749 -16.77502 -16.61661 -16.02153 -15.81775 -15.50309 -15.34767 -14.84604 -14.82833 -14.46965 -14.06681 -13.97976 -13.72801 -13.63148 -13.42867 -13.30817 -12.98920 -12.81578 -12.61971 -12.20844 -12.07115 -12.01024 -11.94998 -11.63196 -11.57804 -11.48866 -11.28600 -11.18741 -10.99113 -10.79063 -10.59842 -9.62409 -8.92344 -8.56018 -5.45618 1.43353 1.45690 1.59899 1.75515 2.03126 2.60080 2.85255 3.07649 3.38940 3.51730 3.72346 3.78100 3.91627 4.05279 4.08163 4.13275 4.16439 4.33977 4.35198 4.42754 4.46046 4.57479 4.64856 4.69226 4.79253 4.80817 4.86467 4.87501 4.92546 4.93907 4.98769 5.02171 5.04879 5.16315 5.19588 5.27017 5.38546 5.45938 5.52317 5.69057 5.80074 6.27238 6.46368 6.95230 7.18151 7.72380 8.05546 8.86883 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015533 B = 0.007103 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.175031 B = 3941.056803 C = 4879.151755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.141 4.141 4 C -0.099 4.099 5 H 0.090 0.910 6 C -0.150 4.150 7 C -0.182 4.182 8 H 0.152 0.848 9 C 0.539 3.461 10 O -0.596 6.596 11 N -0.586 5.586 12 C 0.126 3.874 13 C -0.156 4.156 14 C 0.158 3.842 15 N -0.610 5.610 16 C -0.329 4.329 17 H 0.013 0.987 18 C -0.067 4.067 19 N -0.956 5.956 20 Si 1.100 2.900 21 H -0.263 1.263 22 H -0.258 1.258 23 H -0.316 1.316 24 C 0.092 3.908 25 C 0.095 3.905 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.117 0.883 34 H 0.054 0.946 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.009 0.991 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.241 0.759 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.107 0.893 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 18.315 -5.371 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.199 4.199 4 C -0.118 4.118 5 H 0.108 0.892 6 C -0.187 4.187 7 C -0.202 4.202 8 H 0.169 0.831 9 C 0.329 3.671 10 O -0.478 6.478 11 N -0.315 5.315 12 C 0.005 3.995 13 C -0.197 4.197 14 C 0.032 3.968 15 N -0.334 5.334 16 C -0.459 4.459 17 H 0.031 0.969 18 C -0.261 4.261 19 N -0.598 5.598 20 Si 0.925 3.075 21 H -0.189 1.189 22 H -0.183 1.183 23 H -0.246 1.246 24 C -0.033 4.033 25 C -0.030 4.030 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.135 0.865 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.028 0.972 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.125 0.875 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.093 17.962 -6.376 19.091 hybrid contribution -0.815 -0.860 2.487 2.755 sum 0.279 17.101 -3.889 17.540 Atomic orbital electron populations 1.21798 0.94005 1.01808 1.02410 1.20784 0.96512 0.96409 0.94406 1.21792 1.01275 0.94640 1.02148 1.22473 0.91210 0.97569 1.00549 0.89204 1.22892 1.02854 0.90521 1.02478 1.22345 0.96702 1.06108 0.95078 0.83064 1.20156 0.82226 0.74352 0.90397 1.90585 1.57998 1.52801 1.46430 1.47449 1.05694 1.69968 1.08398 1.20686 0.99765 0.97034 0.81977 1.21599 0.99942 0.97151 1.00959 1.20379 0.92725 0.96647 0.87090 1.43980 1.63662 1.14716 1.11057 1.19982 1.36673 0.95601 0.93667 0.96902 1.27421 1.00091 0.94723 1.03851 1.70971 1.19618 1.37248 1.31958 0.83459 0.76326 0.74784 0.72911 1.18873 1.18260 1.24584 1.22779 0.99732 0.92208 0.88533 1.21952 0.95248 0.95737 0.90035 0.92999 0.90606 0.93174 0.89920 0.92392 0.90738 0.93387 0.86513 0.92720 0.87243 0.91593 0.89654 0.97172 0.94742 0.90338 0.94999 0.92361 0.93251 0.87457 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.18 71.98 0.66 -2.06 16 2 C -0.06 -1.32 3.07 -10.79 -0.03 -1.35 16 3 C -0.14 -2.50 9.03 71.98 0.65 -1.85 16 4 C -0.10 -2.90 4.66 -10.79 -0.05 -2.95 16 5 H 0.09 3.06 7.64 -2.38 -0.02 3.04 16 6 C -0.15 -5.22 9.88 30.61 0.30 -4.92 16 7 C -0.18 -5.66 4.48 -11.52 -0.05 -5.71 16 8 H 0.15 3.63 5.90 -2.39 -0.01 3.62 16 9 C 0.54 20.41 7.45 87.66 0.65 21.06 16 10 O -0.60 -27.08 15.69 -3.03 -0.05 -27.13 16 11 N -0.59 -19.46 2.46 -831.35 -2.04 -21.50 16 12 C 0.13 3.90 5.69 84.23 0.48 4.38 16 13 C -0.16 -5.57 5.63 28.85 0.16 -5.40 16 14 C 0.16 5.92 5.59 87.02 0.49 6.41 16 15 N -0.61 -27.65 2.34 -699.27 -1.64 -29.28 16 16 C -0.33 -18.91 9.54 84.04 0.80 -18.11 16 17 H 0.01 0.86 8.06 -2.91 -0.02 0.83 16 18 C -0.07 -3.93 5.14 84.87 0.44 -3.49 16 19 N -0.96 -61.63 13.70 21.65 0.30 -61.34 16 20 Si 1.10 50.66 24.44 68.60 1.68 52.34 16 21 H -0.26 -10.66 6.76 99.48 0.67 -9.99 16 22 H -0.26 -10.57 6.40 99.48 0.64 -9.93 16 23 H -0.32 -15.32 7.11 99.48 0.71 -14.61 16 24 C 0.09 3.45 4.52 86.54 0.39 3.84 16 25 C 0.10 2.61 5.08 87.53 0.44 3.06 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.60 7.90 -2.39 -0.02 1.59 16 30 H 0.06 0.99 7.29 -2.39 -0.02 0.97 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 3.66 8.05 -2.39 -0.02 3.64 16 34 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.11 2.41 8.06 -2.38 -0.02 2.39 16 36 H 0.07 2.22 7.12 -2.39 -0.02 2.20 16 37 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.01 0.45 7.90 -2.39 -0.02 0.43 16 39 H 0.03 1.38 8.02 -2.38 -0.02 1.36 16 40 H 0.08 2.30 7.58 -2.39 -0.02 2.28 16 41 H 0.24 16.10 8.73 -92.71 -0.81 15.29 16 42 H 0.06 1.99 5.80 -2.39 -0.01 1.97 16 43 H 0.05 2.10 5.53 -2.38 -0.01 2.08 16 44 H 0.11 2.20 7.73 -2.39 -0.02 2.18 16 45 H 0.10 2.24 5.94 -2.39 -0.01 2.23 16 Total: -1.00 -76.92 342.10 4.38 -72.54 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.81 Total: 21.47 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 5.33 Total: -7.09 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -3.39 Total: -112.13 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.05 Total: -27.13 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 1.68 Total: 52.34 kcal Total: -76.92 4.38 -72.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983227444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.778 kcal (2) G-P(sol) polarization free energy of solvation -76.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds