Wall clock time and date at job start Tue Mar 31 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47399 * 2 1 4 4 C 1.53002 * 109.46735 * 119.99997 * 2 1 3 5 5 H 1.08999 * 115.54848 * 314.42289 * 4 2 1 6 6 C 1.53001 * 117.49860 * 168.75332 * 4 2 1 7 7 C 1.52999 * 117.52096 * 100.12382 * 4 2 1 8 8 H 1.08996 * 117.50202 * 214.97285 * 7 4 2 9 9 C 1.50704 * 117.49617 * 359.97438 * 7 4 2 10 10 O 1.21277 * 119.99917 * 332.21650 * 9 7 4 11 11 N 1.34772 * 119.99855 * 152.21707 * 9 7 4 12 12 C 1.48222 * 119.97072 * 179.97438 * 11 9 7 13 13 C 1.47141 * 110.34371 * 102.46396 * 12 11 9 14 14 C 1.53795 * 111.83803 * 58.29576 * 13 12 11 15 15 N 1.43466 * 107.96660 * 281.66875 * 14 13 12 16 16 C 1.36934 * 118.94247 * 273.63890 * 15 14 13 17 17 H 1.07997 * 120.00033 * 165.26841 * 16 15 14 18 18 C 1.38815 * 119.99879 * 345.26080 * 16 15 14 19 19 N 1.31612 * 119.99815 * 142.79092 * 18 16 15 20 20 Si 1.86800 * 119.99992 * 322.78780 * 18 16 15 21 21 H 1.48508 * 109.46704 * 95.42009 * 20 18 16 22 22 H 1.48504 * 109.47300 * 215.41622 * 20 18 16 23 23 H 1.48498 * 109.47108 * 335.42032 * 20 18 16 24 24 C 1.48858 * 122.11768 * 93.65135 * 15 14 13 25 25 C 1.43619 * 119.97290 * 359.72364 * 11 9 7 26 26 H 1.09002 * 109.47505 * 304.66525 * 1 2 3 27 27 H 1.09002 * 109.46921 * 64.65995 * 1 2 3 28 28 H 1.09000 * 109.47286 * 184.66204 * 1 2 3 29 29 H 1.09002 * 109.47038 * 239.99391 * 2 1 3 30 30 H 1.09003 * 109.47043 * 59.99469 * 3 2 1 31 31 H 1.09002 * 109.47285 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46800 * 300.00005 * 3 2 1 33 33 H 1.09005 * 117.49708 * 359.97438 * 6 4 2 34 34 H 1.09002 * 117.50088 * 144.97164 * 6 4 2 35 35 H 1.08997 * 109.32185 * 222.73195 * 12 11 9 36 36 H 1.09001 * 109.32164 * 342.19848 * 12 11 9 37 37 H 1.08998 * 109.00431 * 178.90246 * 13 12 11 38 38 H 1.09004 * 109.00184 * 297.76707 * 13 12 11 39 39 H 1.08996 * 109.76709 * 41.29152 * 14 13 12 40 40 H 1.09007 * 109.75690 * 162.00654 * 14 13 12 41 41 H 0.97005 * 120.00032 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.47868 * 80.58236 * 24 15 14 43 43 H 1.09000 * 109.48421 * 200.60689 * 24 15 14 44 44 H 1.08993 * 108.87218 * 31.47026 * 25 11 9 45 45 H 1.09006 * 108.87639 * 149.90934 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5476 -0.4493 2.1830 6 6 3.5303 -1.0617 1.3096 7 6 2.5004 -2.1716 1.0898 8 1 2.3110 -2.8538 1.9185 9 6 2.4165 -2.7810 -0.2860 10 8 1.5862 -2.3836 -1.0756 11 7 3.2642 -3.7675 -0.6388 12 6 3.1808 -4.3668 -1.9919 13 6 4.2524 -3.8401 -2.8516 14 6 5.6460 -4.1159 -2.2626 15 7 5.8842 -3.1577 -1.2218 16 6 6.4111 -1.9377 -1.5522 17 1 6.3786 -1.1251 -0.8416 18 6 6.9872 -1.7455 -2.8004 19 7 6.8350 -0.5974 -3.4256 20 14 7.9784 -3.1163 -3.5928 21 1 7.1072 -3.8870 -4.5161 22 1 9.1116 -2.5317 -4.3539 23 1 8.5042 -4.0201 -2.5383 24 6 5.5773 -3.4471 0.2057 25 6 4.2511 -4.2336 0.2948 26 1 -0.3634 0.5845 0.8452 27 1 -0.3633 0.4398 -0.9288 28 1 -0.3634 -1.0243 0.0835 29 1 1.8933 -0.5139 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 4.1475 -0.7722 0.4590 34 1 4.0187 -1.0134 2.2829 35 1 3.2804 -5.4494 -1.9136 36 1 2.2134 -4.1272 -2.4334 37 1 4.1827 -4.3088 -3.8332 38 1 4.1217 -2.7636 -2.9623 39 1 5.6788 -5.1242 -1.8499 40 1 6.4022 -4.0116 -3.0408 41 1 7.2373 -0.4632 -4.2981 42 1 6.3831 -4.0404 0.6377 43 1 5.4817 -2.5100 0.7542 44 1 3.8547 -4.1352 1.3053 45 1 4.4530 -5.2866 0.0982 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000983227446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:15 Heat of formation + Delta-G solvation = 31.071578 kcal Electronic energy + Delta-G solvation = -24309.526761 eV Core-core repulsion = 21136.351489 eV Total energy + Delta-G solvation = -3173.175272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.21636 -37.89417 -36.46547 -34.44450 -33.22209 -32.19936 -31.48877 -27.85537 -26.78397 -26.08400 -24.04413 -23.64872 -22.69866 -21.50022 -20.09999 -19.64223 -18.01857 -16.87614 -16.65531 -15.80346 -15.58382 -15.24521 -14.66756 -14.25757 -13.80435 -13.53310 -13.36637 -13.05319 -12.89708 -12.77253 -12.60399 -12.39243 -12.01386 -11.89369 -11.75091 -11.67037 -11.26244 -11.00007 -10.89972 -10.81840 -10.62365 -10.40597 -10.32256 -10.11030 -9.92019 -9.74016 -9.66897 -9.24889 -9.02220 -8.37119 -8.09556 -7.09402 -6.00419 -3.11262 3.02025 3.32622 3.41555 3.51105 3.52525 4.05082 4.55362 4.76591 4.91530 4.94654 5.10129 5.23239 5.31664 5.44937 5.45013 5.53641 5.61700 5.64679 5.72996 5.83595 5.87994 5.91401 5.95906 5.99441 6.00262 6.13999 6.18913 6.20690 6.33384 6.35246 6.43311 6.46397 6.51252 6.57684 6.59445 6.71529 6.73424 6.94619 7.06994 7.27691 7.90390 7.98350 8.25946 8.68908 8.99822 9.78421 10.07344 11.14042 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.006860 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.295715 B = 4080.664716 C = 4578.832769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 C -0.143 4.143 4 C -0.113 4.113 5 H 0.102 0.898 6 C -0.151 4.151 7 C -0.185 4.185 8 H 0.119 0.881 9 C 0.550 3.450 10 O -0.538 6.538 11 N -0.583 5.583 12 C 0.131 3.869 13 C -0.167 4.167 14 C 0.154 3.846 15 N -0.599 5.599 16 C -0.270 4.270 17 H 0.084 0.916 18 C 0.033 3.967 19 N -0.878 5.878 20 Si 0.857 3.143 21 H -0.287 1.287 22 H -0.306 1.306 23 H -0.279 1.279 24 C 0.127 3.873 25 C 0.098 3.902 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.261 0.739 42 H 0.031 0.969 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 -4.984 9.770 14.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.096 4.096 3 C -0.200 4.200 4 C -0.131 4.131 5 H 0.120 0.880 6 C -0.188 4.188 7 C -0.206 4.206 8 H 0.136 0.864 9 C 0.338 3.662 10 O -0.416 6.416 11 N -0.314 5.314 12 C 0.010 3.990 13 C -0.207 4.207 14 C 0.027 3.973 15 N -0.322 5.322 16 C -0.398 4.398 17 H 0.101 0.899 18 C -0.167 4.167 19 N -0.519 5.519 20 Si 0.689 3.311 21 H -0.217 1.217 22 H -0.235 1.235 23 H -0.205 1.205 24 C 0.001 3.999 25 C -0.029 4.029 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.111 -4.674 9.242 13.794 hybrid contribution 0.960 -0.910 -0.484 1.409 sum -8.151 -5.585 8.758 13.204 Atomic orbital electron populations 1.21618 0.95444 1.01284 1.00234 1.20968 0.95594 0.95283 0.97804 1.21797 1.01448 0.96112 1.00673 1.22357 0.96956 0.93949 0.99859 0.88011 1.23132 0.92239 0.99544 1.03906 1.22162 1.08916 0.93043 0.96496 0.86364 1.19558 0.80318 0.78553 0.87774 1.90589 1.37748 1.59989 1.53311 1.47338 1.32451 1.37078 1.14579 1.20569 1.00256 0.95860 0.82351 1.21695 0.97374 1.04055 0.97625 1.20572 0.94090 0.91363 0.91288 1.43937 1.72908 1.15033 1.00332 1.18753 1.33711 0.86856 1.00443 0.89881 1.24850 1.00585 0.95442 0.95853 1.70126 1.42361 1.26034 1.13350 0.87297 0.81147 0.83752 0.78874 1.21665 1.23470 1.20543 1.22060 0.92882 0.98602 0.86403 1.21633 0.90368 0.98407 0.92443 0.94091 0.93339 0.92624 0.87970 0.93620 0.92444 0.93049 0.87005 0.88453 0.92363 0.90205 0.92697 0.89806 0.94577 0.93629 0.92934 0.95165 0.91617 0.91082 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.95 37.16 0.33 -1.49 16 2 C -0.08 -1.24 2.21 -90.62 -0.20 -1.44 16 3 C -0.14 -2.11 9.13 37.16 0.34 -1.77 16 4 C -0.11 -1.57 5.01 -90.62 -0.45 -2.03 16 5 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 6 C -0.15 -2.17 8.15 -26.73 -0.22 -2.39 16 7 C -0.19 -2.65 4.52 -91.77 -0.42 -3.06 16 8 H 0.12 1.38 7.67 -51.93 -0.40 0.98 16 9 C 0.55 9.69 6.99 -10.99 -0.08 9.62 16 10 O -0.54 -10.95 12.79 5.56 0.07 -10.88 16 11 N -0.58 -9.83 2.47 -176.93 -0.44 -10.27 16 12 C 0.13 2.23 5.70 -5.91 -0.03 2.20 16 13 C -0.17 -3.36 5.64 -29.13 -0.16 -3.52 16 14 C 0.15 3.30 4.77 -5.23 -0.02 3.27 16 15 N -0.60 -13.47 2.44 -172.26 -0.42 -13.89 16 16 C -0.27 -7.25 9.68 -15.06 -0.15 -7.39 16 17 H 0.08 2.36 7.94 -52.49 -0.42 1.95 16 18 C 0.03 0.93 5.16 -17.43 -0.09 0.84 16 19 N -0.88 -26.36 13.97 55.49 0.78 -25.59 16 20 Si 0.86 21.83 25.19 -169.99 -4.28 17.55 16 21 H -0.29 -7.14 6.69 56.52 0.38 -6.76 16 22 H -0.31 -7.99 7.11 56.52 0.40 -7.59 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 24 C 0.13 2.25 6.84 -1.98 -0.01 2.24 16 25 C 0.10 1.43 5.04 -4.81 -0.02 1.40 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.83 7.91 -51.93 -0.41 0.42 16 29 H 0.10 2.03 5.23 -51.93 -0.27 1.76 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.91 8.02 -51.93 -0.42 0.50 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.11 2.04 7.87 -51.93 -0.41 1.64 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 36 H 0.08 1.40 7.13 -51.93 -0.37 1.03 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 2.07 7.91 -51.93 -0.41 1.66 16 39 H 0.04 0.68 7.58 -51.93 -0.39 0.28 16 40 H 0.05 1.10 1.55 -51.93 -0.08 1.02 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 1.16 5.86 -51.93 -0.30 0.86 16 44 H 0.07 0.85 6.54 -51.93 -0.34 0.51 16 45 H 0.06 0.85 7.73 -51.93 -0.40 0.45 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -30.87 335.99 -8.00 -38.86 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.58 Total: 2.68 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.19 Total: -3.53 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.08 Total: -49.74 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.07 Total: -10.88 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.28 Total: 17.55 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.87 -8.00 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983227446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.936 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds