Wall clock time and date at job start Tue Mar 31 2020 01:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47399 * 2 1 4 4 C 1.53002 * 109.46735 * 119.99997 * 2 1 3 5 5 H 1.08999 * 115.54848 * 314.42289 * 4 2 1 6 6 C 1.53001 * 117.49860 * 168.75332 * 4 2 1 7 7 C 1.52999 * 117.52096 * 100.12382 * 4 2 1 8 8 H 1.08996 * 117.50202 * 214.97285 * 7 4 2 9 9 C 1.50704 * 117.49617 * 359.97438 * 7 4 2 10 10 O 1.21277 * 119.99917 * 332.21650 * 9 7 4 11 11 N 1.34772 * 119.99855 * 152.21707 * 9 7 4 12 12 C 1.48222 * 119.97072 * 179.97438 * 11 9 7 13 13 C 1.47141 * 110.34371 * 102.46396 * 12 11 9 14 14 C 1.53795 * 111.83803 * 58.29576 * 13 12 11 15 15 N 1.43466 * 107.96660 * 281.66875 * 14 13 12 16 16 C 1.36934 * 118.94247 * 273.63890 * 15 14 13 17 17 H 1.07997 * 120.00033 * 165.26841 * 16 15 14 18 18 C 1.38815 * 119.99879 * 345.26080 * 16 15 14 19 19 N 1.31612 * 119.99815 * 142.79092 * 18 16 15 20 20 Si 1.86800 * 119.99992 * 322.78780 * 18 16 15 21 21 H 1.48508 * 109.46704 * 95.42009 * 20 18 16 22 22 H 1.48504 * 109.47300 * 215.41622 * 20 18 16 23 23 H 1.48498 * 109.47108 * 335.42032 * 20 18 16 24 24 C 1.48858 * 122.11768 * 93.65135 * 15 14 13 25 25 C 1.43619 * 119.97290 * 359.72364 * 11 9 7 26 26 H 1.09002 * 109.47505 * 304.66525 * 1 2 3 27 27 H 1.09002 * 109.46921 * 64.65995 * 1 2 3 28 28 H 1.09000 * 109.47286 * 184.66204 * 1 2 3 29 29 H 1.09002 * 109.47038 * 239.99391 * 2 1 3 30 30 H 1.09003 * 109.47043 * 59.99469 * 3 2 1 31 31 H 1.09002 * 109.47285 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46800 * 300.00005 * 3 2 1 33 33 H 1.09005 * 117.49708 * 359.97438 * 6 4 2 34 34 H 1.09002 * 117.50088 * 144.97164 * 6 4 2 35 35 H 1.08997 * 109.32185 * 222.73195 * 12 11 9 36 36 H 1.09001 * 109.32164 * 342.19848 * 12 11 9 37 37 H 1.08998 * 109.00431 * 178.90246 * 13 12 11 38 38 H 1.09004 * 109.00184 * 297.76707 * 13 12 11 39 39 H 1.08996 * 109.76709 * 41.29152 * 14 13 12 40 40 H 1.09007 * 109.75690 * 162.00654 * 14 13 12 41 41 H 0.97005 * 120.00032 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.47868 * 80.58236 * 24 15 14 43 43 H 1.09000 * 109.48421 * 200.60689 * 24 15 14 44 44 H 1.08993 * 108.87218 * 31.47026 * 25 11 9 45 45 H 1.09006 * 108.87639 * 149.90934 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5476 -0.4493 2.1830 6 6 3.5303 -1.0617 1.3096 7 6 2.5004 -2.1716 1.0898 8 1 2.3110 -2.8538 1.9185 9 6 2.4165 -2.7810 -0.2860 10 8 1.5862 -2.3836 -1.0756 11 7 3.2642 -3.7675 -0.6388 12 6 3.1808 -4.3668 -1.9919 13 6 4.2524 -3.8401 -2.8516 14 6 5.6460 -4.1159 -2.2626 15 7 5.8842 -3.1577 -1.2218 16 6 6.4111 -1.9377 -1.5522 17 1 6.3786 -1.1251 -0.8416 18 6 6.9872 -1.7455 -2.8004 19 7 6.8350 -0.5974 -3.4256 20 14 7.9784 -3.1163 -3.5928 21 1 7.1072 -3.8870 -4.5161 22 1 9.1116 -2.5317 -4.3539 23 1 8.5042 -4.0201 -2.5383 24 6 5.5773 -3.4471 0.2057 25 6 4.2511 -4.2336 0.2948 26 1 -0.3634 0.5845 0.8452 27 1 -0.3633 0.4398 -0.9288 28 1 -0.3634 -1.0243 0.0835 29 1 1.8933 -0.5139 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 4.1475 -0.7722 0.4590 34 1 4.0187 -1.0134 2.2829 35 1 3.2804 -5.4494 -1.9136 36 1 2.2134 -4.1272 -2.4334 37 1 4.1827 -4.3088 -3.8332 38 1 4.1217 -2.7636 -2.9623 39 1 5.6788 -5.1242 -1.8499 40 1 6.4022 -4.0116 -3.0408 41 1 7.2373 -0.4632 -4.2981 42 1 6.3831 -4.0404 0.6377 43 1 5.4817 -2.5100 0.7542 44 1 3.8547 -4.1352 1.3053 45 1 4.4530 -5.2866 0.0982 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000983227446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:14 Heat of formation + Delta-G solvation = 12.307118 kcal Electronic energy + Delta-G solvation = -24310.340449 eV Core-core repulsion = 21136.351489 eV Total energy + Delta-G solvation = -3173.988960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.53668 -39.32098 -37.87485 -36.04132 -34.54700 -33.59644 -33.50192 -29.42346 -27.99381 -27.65353 -25.52540 -25.31899 -23.87191 -22.85560 -21.79166 -20.87486 -19.33715 -18.68596 -18.18400 -17.34701 -17.23221 -16.58302 -16.09323 -15.68751 -15.23325 -15.03378 -14.87299 -14.73025 -14.42213 -14.14816 -13.93490 -13.78194 -13.69471 -13.39080 -13.12091 -12.94415 -12.76608 -12.67918 -12.41861 -12.10096 -12.06047 -12.03178 -11.84284 -11.65478 -11.57800 -11.17346 -10.92713 -10.83015 -10.45177 -10.35333 -9.50627 -8.98058 -8.17160 -5.22275 1.28252 1.40903 1.49232 1.68660 2.16871 2.44756 2.89422 2.96456 3.45895 3.63832 3.80858 3.94691 4.04394 4.11106 4.19426 4.22665 4.30302 4.36032 4.46190 4.51648 4.53874 4.65859 4.66946 4.78451 4.83207 4.87137 4.91512 4.94890 4.99024 5.04060 5.07002 5.10459 5.13565 5.14922 5.24674 5.37586 5.46029 5.53322 5.67579 5.81458 5.89865 6.10379 6.63457 7.00937 7.36429 7.78818 8.04412 9.01453 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.006860 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.295715 B = 4080.664716 C = 4578.832769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.109 4.109 5 H 0.138 0.862 6 C -0.148 4.148 7 C -0.178 4.178 8 H 0.160 0.840 9 C 0.534 3.466 10 O -0.575 6.575 11 N -0.587 5.587 12 C 0.132 3.868 13 C -0.154 4.154 14 C 0.148 3.852 15 N -0.609 5.609 16 C -0.248 4.248 17 H 0.050 0.950 18 C -0.029 4.029 19 N -0.934 5.934 20 Si 0.927 3.073 21 H -0.280 1.280 22 H -0.320 1.320 23 H -0.267 1.267 24 C 0.119 3.881 25 C 0.099 3.901 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.130 0.870 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.022 0.978 39 H 0.078 0.922 40 H 0.021 0.979 41 H 0.256 0.744 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.109 0.891 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -7.852 12.798 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.101 4.101 3 C -0.196 4.196 4 C -0.128 4.128 5 H 0.156 0.844 6 C -0.186 4.186 7 C -0.199 4.199 8 H 0.178 0.822 9 C 0.324 3.676 10 O -0.456 6.456 11 N -0.318 5.318 12 C 0.010 3.990 13 C -0.195 4.195 14 C 0.022 3.978 15 N -0.333 5.333 16 C -0.377 4.377 17 H 0.068 0.932 18 C -0.225 4.225 19 N -0.579 5.579 20 Si 0.759 3.241 21 H -0.209 1.209 22 H -0.250 1.250 23 H -0.192 1.192 24 C -0.006 4.006 25 C -0.026 4.026 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.148 0.852 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.127 0.873 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.932 -7.609 12.311 17.553 hybrid contribution 1.161 0.053 -1.398 1.818 sum -8.771 -7.556 10.913 15.910 Atomic orbital electron populations 1.21532 0.93999 1.01141 1.01041 1.20879 0.96814 0.95346 0.97027 1.21751 0.99951 0.96074 1.01807 1.22465 0.96523 0.93701 1.00070 0.84432 1.22969 0.92124 1.00100 1.03365 1.22277 1.08421 0.93583 0.95587 0.82245 1.20292 0.79963 0.78370 0.88959 1.90583 1.39411 1.60869 1.54693 1.47497 1.32662 1.36884 1.14713 1.20544 0.98209 0.98034 0.82219 1.21559 0.98262 1.00277 0.99377 1.20686 0.93486 0.93025 0.90632 1.44068 1.72441 1.13797 1.02953 1.18737 1.31695 0.88057 0.99233 0.93186 1.25406 1.02430 0.97590 0.97071 1.70248 1.44760 1.28804 1.14100 0.86151 0.78890 0.80819 0.78212 1.20859 1.25018 1.19205 1.22358 0.95492 0.99410 0.83289 1.21768 0.88022 0.98962 0.93877 0.91223 0.94207 0.93507 0.92968 0.90649 0.94685 0.93698 0.92146 0.85229 0.88049 0.91419 0.91467 0.95891 0.90363 0.96121 0.93489 0.92947 0.92336 0.87347 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 8.95 71.98 0.64 -2.67 16 2 C -0.08 -2.63 2.21 -10.79 -0.02 -2.65 16 3 C -0.14 -4.17 9.13 71.98 0.66 -3.51 16 4 C -0.11 -2.83 5.01 -10.79 -0.05 -2.88 16 5 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 6 C -0.15 -4.08 8.15 30.59 0.25 -3.83 16 7 C -0.18 -4.62 4.52 -11.54 -0.05 -4.67 16 8 H 0.16 2.83 7.67 -2.39 -0.02 2.81 16 9 C 0.53 18.40 6.99 87.66 0.61 19.01 16 10 O -0.58 -24.04 12.79 -3.02 -0.04 -24.08 16 11 N -0.59 -18.51 2.47 -832.06 -2.05 -20.57 16 12 C 0.13 4.25 5.70 84.23 0.48 4.73 16 13 C -0.15 -6.17 5.64 29.04 0.16 -6.00 16 14 C 0.15 6.07 4.77 87.21 0.42 6.48 16 15 N -0.61 -26.93 2.44 -698.91 -1.71 -28.64 16 16 C -0.25 -13.75 9.68 84.03 0.81 -12.94 16 17 H 0.05 3.03 7.94 -2.91 -0.02 3.01 16 18 C -0.03 -1.70 5.16 84.86 0.44 -1.26 16 19 N -0.93 -59.55 13.97 21.65 0.30 -59.25 16 20 Si 0.93 46.56 25.19 68.60 1.73 48.28 16 21 H -0.28 -13.49 6.69 99.48 0.67 -12.83 16 22 H -0.32 -16.62 7.11 99.48 0.71 -15.91 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 C 0.12 3.91 6.84 86.42 0.59 4.50 16 25 C 0.10 2.44 5.04 87.41 0.44 2.88 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.36 7.91 -2.39 -0.02 1.35 16 29 H 0.05 2.22 5.23 -2.39 -0.01 2.21 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.03 1.18 8.02 -2.39 -0.02 1.16 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 2.33 7.87 -2.38 -0.02 2.31 16 34 H 0.13 2.69 8.14 -2.39 -0.02 2.68 16 35 H 0.10 2.45 8.06 -2.39 -0.02 2.43 16 36 H 0.07 2.36 7.13 -2.39 -0.02 2.34 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.02 1.17 7.91 -2.39 -0.02 1.15 16 39 H 0.08 2.57 7.58 -2.39 -0.02 2.55 16 40 H 0.02 0.98 1.55 -2.38 0.00 0.98 16 41 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.99 5.86 -2.39 -0.01 1.98 16 44 H 0.11 1.95 6.54 -2.39 -0.02 1.93 16 45 H 0.09 1.86 7.73 -2.38 -0.02 1.84 16 Total: -1.00 -74.33 335.99 4.53 -69.80 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.92 Total: 17.26 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.38 Total: -2.81 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -3.46 Total: -108.45 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.04 Total: -24.08 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.73 Total: 48.28 kcal Total: -74.33 4.53 -69.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983227446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.109 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds