Wall clock time and date at job start Tue Mar 31 2020 02:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99758 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00201 * 179.97438 * 4 3 2 7 7 C 1.48658 * 125.78577 * 359.69676 * 6 4 3 8 8 C 1.53281 * 103.33495 * 155.56147 * 7 6 4 9 9 H 1.08997 * 110.74163 * 284.60521 * 8 7 6 10 10 C 1.51614 * 117.40389 * 156.41761 * 8 7 6 11 11 C 1.53815 * 107.02268 * 183.49060 * 10 8 7 12 12 C 1.52523 * 111.69775 * 57.53889 * 11 10 8 13 13 C 1.51893 * 112.21265 * 306.64681 * 12 11 10 14 14 H 1.09000 * 108.49177 * 296.67358 * 13 12 11 15 15 N 1.46498 * 110.39035 * 176.08328 * 13 12 11 16 16 C 1.36935 * 120.00652 * 85.89267 * 15 13 12 17 17 H 1.07999 * 119.99750 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00067 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00549 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99755 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46854 * 120.00148 * 20 18 16 23 23 H 1.48494 * 109.46898 * 240.00289 * 20 18 16 24 24 C 1.51443 * 108.05085 * 55.82911 * 13 12 11 25 25 H 1.09006 * 109.87323 * 55.85927 * 24 13 12 26 26 C 1.48246 * 125.78385 * 180.02562 * 6 4 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.09002 * 110.62329 * 274.14239 * 7 6 4 35 35 H 1.09001 * 110.62917 * 37.15682 * 7 6 4 36 36 H 1.08995 * 109.94673 * 302.87487 * 10 8 7 37 37 H 1.09007 * 109.93905 * 64.11683 * 10 8 7 38 38 H 1.08996 * 109.03701 * 178.11314 * 11 10 8 39 39 H 1.09001 * 109.03195 * 297.04426 * 11 10 8 40 40 H 1.09005 * 109.04247 * 66.51634 * 12 11 10 41 41 H 1.08999 * 109.04390 * 185.46720 * 12 11 10 42 42 H 0.97008 * 119.99911 * 265.88794 * 15 13 12 43 43 H 0.96996 * 120.00271 * 179.97438 * 19 18 16 44 44 H 1.09006 * 110.16776 * 295.88504 * 26 6 4 45 45 H 1.08997 * 110.16877 * 57.68166 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.6113 3.9654 -0.0072 8 6 4.7016 4.8468 0.6124 9 1 4.7511 4.6984 1.6911 10 6 4.6756 6.3259 0.2805 11 6 5.9096 6.9585 0.9460 12 6 7.2030 6.2996 0.4774 13 6 7.1748 4.7910 0.6517 14 1 7.0938 4.5674 1.7154 15 7 8.3946 4.1912 0.1053 16 6 9.5195 4.0998 0.8807 17 1 9.5076 4.4703 1.8951 18 6 10.6751 3.5310 0.3630 19 7 10.6895 3.0790 -0.8730 20 14 12.2098 3.4069 1.4208 21 1 11.9346 3.9823 2.7619 22 1 12.5978 1.9808 1.5647 23 1 13.3168 4.1586 0.7768 24 6 5.9628 4.2563 -0.0822 25 1 5.9931 4.5704 -1.1256 26 6 5.6958 2.7590 0.0002 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.3917 4.2820 -1.0269 35 1 2.7092 3.9842 0.6044 36 1 4.7230 6.4655 -0.7995 37 1 3.7666 6.7796 0.6754 38 1 5.9417 8.0197 0.6996 39 1 5.8267 6.8471 2.0272 40 1 7.3501 6.5176 -0.5805 41 1 8.0377 6.7115 1.0446 42 1 8.4054 3.8587 -0.8060 43 1 11.4971 2.6819 -1.2348 44 1 6.1147 2.3528 0.9210 45 1 6.1249 2.2523 -0.8642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992584426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:03 Heat of formation + Delta-G solvation = -45.276906 kcal Electronic energy + Delta-G solvation = -22740.912367 eV Core-core repulsion = 19564.426377 eV Total energy + Delta-G solvation = -3176.485991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.38733 -38.71105 -35.58728 -34.45329 -33.96795 -31.54577 -30.69232 -29.07289 -27.86975 -26.73629 -24.59562 -23.26789 -21.85082 -20.80409 -20.41955 -19.67852 -19.02638 -17.21544 -16.64362 -16.14867 -15.66628 -14.98368 -14.87781 -14.24973 -14.19262 -13.89516 -13.69500 -13.34956 -13.09466 -12.81217 -12.59208 -12.54628 -12.21843 -12.00635 -11.86368 -11.75822 -11.45048 -11.29288 -10.99097 -10.89857 -10.87592 -10.80006 -10.50818 -10.24580 -10.18851 -10.12431 -9.76244 -9.65163 -9.44931 -8.88933 -8.47530 -6.96001 -5.75280 -3.04430 2.79256 3.06294 3.44599 3.50134 3.52451 4.36832 4.54347 4.59507 4.75179 4.80321 4.87818 4.95464 5.21772 5.25311 5.34231 5.36444 5.39017 5.46088 5.49011 5.55303 5.57622 5.63965 5.71659 5.81648 5.85638 5.88413 5.92959 6.00834 6.07042 6.09167 6.17679 6.18467 6.28840 6.41894 6.43638 6.55361 6.61073 6.64792 6.88287 7.09265 7.67743 7.71804 8.32535 8.42678 9.54291 10.10713 10.45351 11.47244 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.004420 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.229367 B = 6333.180056 C = 7625.268878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.521 3.479 5 O -0.542 6.542 6 N -0.624 5.624 7 C 0.111 3.889 8 C -0.107 4.107 9 H 0.084 0.916 10 C -0.100 4.100 11 C -0.114 4.114 12 C -0.138 4.138 13 C 0.196 3.804 14 H 0.047 0.953 15 N -0.722 5.722 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.102 4.102 25 H 0.076 0.924 26 C 0.125 3.875 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.072 0.928 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.874 4.144 1.582 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.175 4.175 4 C 0.310 3.690 5 O -0.419 6.419 6 N -0.359 5.359 7 C -0.012 4.012 8 C -0.127 4.127 9 H 0.103 0.897 10 C -0.138 4.138 11 C -0.152 4.152 12 C -0.179 4.179 13 C 0.085 3.915 14 H 0.065 0.935 15 N -0.362 5.362 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.122 4.122 25 H 0.095 0.905 26 C 0.004 3.996 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.430 3.471 1.718 20.794 hybrid contribution 1.022 -0.017 0.176 1.037 sum -19.408 3.454 1.894 19.804 Atomic orbital electron populations 1.21790 0.95616 1.01841 1.01648 1.21289 0.95043 0.94887 1.03649 1.21685 0.91921 0.99878 1.03971 1.20400 0.89914 0.82354 0.76330 1.90724 1.70502 1.30592 1.50089 1.49308 1.08049 1.05407 1.73135 1.22103 0.96320 0.82055 1.00718 1.22126 0.94868 0.94988 1.00712 0.89747 1.21296 0.98092 0.93422 1.00942 1.21530 0.94717 0.98982 0.99984 1.21979 0.95886 0.98639 1.01352 1.19506 0.85310 0.90636 0.96018 0.93539 1.42396 1.07663 1.71149 1.15039 1.19257 0.89340 1.32878 0.95503 0.91182 1.24730 0.98120 1.01504 0.96462 1.69661 1.28024 1.46028 1.14217 0.86157 0.83571 0.77303 0.79396 1.20587 1.21874 1.21936 1.22125 0.95963 0.93404 1.00661 0.90512 1.21581 0.78381 0.96609 1.03037 0.92761 0.92763 0.92481 0.91236 0.91231 0.89226 0.89239 0.91199 0.90802 0.91622 0.92100 0.92632 0.92579 0.92790 0.91908 0.78208 0.93561 0.90919 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.11 -1.13 5.22 -26.74 -0.14 -1.27 16 3 C -0.13 -1.37 4.73 -27.89 -0.13 -1.50 16 4 C 0.52 7.88 7.86 -10.99 -0.09 7.79 16 5 O -0.54 -10.64 16.32 5.55 0.09 -10.55 16 6 N -0.62 -9.03 3.38 -170.73 -0.58 -9.60 16 7 C 0.11 1.17 6.39 -2.70 -0.02 1.16 16 8 C -0.11 -1.28 2.48 -89.78 -0.22 -1.50 16 9 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 10 C -0.10 -1.05 5.75 -27.01 -0.16 -1.20 16 11 C -0.11 -1.41 5.84 -26.55 -0.16 -1.57 16 12 C -0.14 -2.29 5.40 -27.54 -0.15 -2.44 16 13 C 0.20 3.69 2.41 -69.28 -0.17 3.52 16 14 H 0.05 0.92 8.01 -51.93 -0.42 0.50 16 15 N -0.72 -17.60 5.06 -54.75 -0.28 -17.88 16 16 C -0.24 -6.54 9.95 -15.06 -0.15 -6.69 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 20 Si 0.90 22.53 29.55 -169.99 -5.02 17.50 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 C -0.10 -1.60 1.81 -90.36 -0.16 -1.76 16 25 H 0.08 1.22 7.97 -51.93 -0.41 0.81 16 26 C 0.13 2.18 6.51 -3.43 -0.02 2.16 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.74 7.89 -51.93 -0.41 0.33 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.61 7.55 -51.93 -0.39 0.21 16 36 H 0.07 0.69 8.00 -51.93 -0.42 0.27 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.38 10.06 7.81 -40.82 -0.32 9.75 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 44 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -32.04 353.73 -9.26 -41.30 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -8.24 Total: 5.86 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.29 Total: -4.51 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.13 Total: -54.94 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.04 -9.26 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992584426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.973 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds