Wall clock time and date at job start Tue Mar 31 2020 02:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99758 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00201 * 179.97438 * 4 3 2 7 7 C 1.48658 * 125.78577 * 359.69676 * 6 4 3 8 8 C 1.53281 * 103.33495 * 155.56147 * 7 6 4 9 9 H 1.08997 * 110.74163 * 284.60521 * 8 7 6 10 10 C 1.51614 * 117.40389 * 156.41761 * 8 7 6 11 11 C 1.53815 * 107.02268 * 183.49060 * 10 8 7 12 12 C 1.52523 * 111.69775 * 57.53889 * 11 10 8 13 13 C 1.51893 * 112.21265 * 306.64681 * 12 11 10 14 14 H 1.09000 * 108.49177 * 296.67358 * 13 12 11 15 15 N 1.46498 * 110.39035 * 176.08328 * 13 12 11 16 16 C 1.36935 * 120.00652 * 85.89267 * 15 13 12 17 17 H 1.07999 * 119.99750 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00067 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00549 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99755 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46854 * 120.00148 * 20 18 16 23 23 H 1.48494 * 109.46898 * 240.00289 * 20 18 16 24 24 C 1.51443 * 108.05085 * 55.82911 * 13 12 11 25 25 H 1.09006 * 109.87323 * 55.85927 * 24 13 12 26 26 C 1.48246 * 125.78385 * 180.02562 * 6 4 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.09002 * 110.62329 * 274.14239 * 7 6 4 35 35 H 1.09001 * 110.62917 * 37.15682 * 7 6 4 36 36 H 1.08995 * 109.94673 * 302.87487 * 10 8 7 37 37 H 1.09007 * 109.93905 * 64.11683 * 10 8 7 38 38 H 1.08996 * 109.03701 * 178.11314 * 11 10 8 39 39 H 1.09001 * 109.03195 * 297.04426 * 11 10 8 40 40 H 1.09005 * 109.04247 * 66.51634 * 12 11 10 41 41 H 1.08999 * 109.04390 * 185.46720 * 12 11 10 42 42 H 0.97008 * 119.99911 * 265.88794 * 15 13 12 43 43 H 0.96996 * 120.00271 * 179.97438 * 19 18 16 44 44 H 1.09006 * 110.16776 * 295.88504 * 26 6 4 45 45 H 1.08997 * 110.16877 * 57.68166 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.6113 3.9654 -0.0072 8 6 4.7016 4.8468 0.6124 9 1 4.7511 4.6984 1.6911 10 6 4.6756 6.3259 0.2805 11 6 5.9096 6.9585 0.9460 12 6 7.2030 6.2996 0.4774 13 6 7.1748 4.7910 0.6517 14 1 7.0938 4.5674 1.7154 15 7 8.3946 4.1912 0.1053 16 6 9.5195 4.0998 0.8807 17 1 9.5076 4.4703 1.8951 18 6 10.6751 3.5310 0.3630 19 7 10.6895 3.0790 -0.8730 20 14 12.2098 3.4069 1.4208 21 1 11.9346 3.9823 2.7619 22 1 12.5978 1.9808 1.5647 23 1 13.3168 4.1586 0.7768 24 6 5.9628 4.2563 -0.0822 25 1 5.9931 4.5704 -1.1256 26 6 5.6958 2.7590 0.0002 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.3917 4.2820 -1.0269 35 1 2.7092 3.9842 0.6044 36 1 4.7230 6.4655 -0.7995 37 1 3.7666 6.7796 0.6754 38 1 5.9417 8.0197 0.6996 39 1 5.8267 6.8471 2.0272 40 1 7.3501 6.5176 -0.5805 41 1 8.0377 6.7115 1.0446 42 1 8.4054 3.8587 -0.8060 43 1 11.4971 2.6819 -1.2348 44 1 6.1147 2.3528 0.9210 45 1 6.1249 2.2523 -0.8642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992584426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:02 Heat of formation + Delta-G solvation = -65.760051 kcal Electronic energy + Delta-G solvation = -22741.800583 eV Core-core repulsion = 19564.426377 eV Total energy + Delta-G solvation = -3177.374206 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58348 -39.95076 -37.00097 -35.59827 -35.28997 -33.31074 -31.88725 -30.59181 -28.89006 -27.90772 -26.06217 -24.94639 -22.71549 -21.98770 -21.60276 -21.00675 -20.14008 -19.17141 -17.85849 -17.25000 -16.84972 -16.65225 -15.91958 -15.77127 -15.57770 -15.11015 -14.96012 -14.76173 -14.23498 -13.97286 -13.86995 -13.59350 -13.48245 -13.20157 -12.89728 -12.84707 -12.81516 -12.64006 -12.56893 -12.18126 -12.01197 -12.00113 -11.88782 -11.71549 -11.60895 -11.49867 -11.25040 -10.92544 -10.87182 -10.81938 -9.70897 -9.01616 -7.95695 -5.23705 1.43520 1.44977 1.54304 1.63417 1.93620 2.53811 3.29818 3.37633 3.57076 3.66788 3.84505 4.00171 4.07259 4.12418 4.24323 4.26755 4.45300 4.47712 4.52892 4.56954 4.63107 4.66146 4.71011 4.72615 4.74710 4.79841 4.87403 4.91346 4.94306 5.11998 5.18198 5.24911 5.28731 5.29712 5.34537 5.39241 5.42985 5.48478 5.51187 5.53737 5.70988 6.26721 6.55874 7.15744 7.32327 8.09229 8.31216 9.28022 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.004420 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.229367 B = 6333.180056 C = 7625.268878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.121 4.121 4 C 0.510 3.490 5 O -0.602 6.602 6 N -0.623 5.623 7 C 0.112 3.888 8 C -0.092 4.092 9 H 0.082 0.918 10 C -0.091 4.091 11 C -0.108 4.108 12 C -0.128 4.128 13 C 0.190 3.810 14 H 0.034 0.966 15 N -0.737 5.737 16 C -0.234 4.234 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.298 1.298 23 H -0.292 1.292 24 C -0.098 4.098 25 H 0.076 0.924 26 C 0.130 3.870 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.371 0.629 43 H 0.249 0.751 44 H 0.037 0.963 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.509 6.618 2.489 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.160 4.160 4 C 0.301 3.699 5 O -0.484 6.484 6 N -0.357 5.357 7 C -0.009 4.009 8 C -0.112 4.112 9 H 0.100 0.900 10 C -0.129 4.129 11 C -0.147 4.147 12 C -0.169 4.169 13 C 0.082 3.918 14 H 0.052 0.948 15 N -0.376 5.376 16 C -0.366 4.366 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.798 3.202 21 H -0.189 1.189 22 H -0.225 1.225 23 H -0.219 1.219 24 C -0.118 4.118 25 H 0.095 0.905 26 C 0.007 3.993 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.110 0.890 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -24.133 6.018 2.662 25.014 hybrid contribution 2.136 -0.801 -0.077 2.283 sum -21.997 5.217 2.585 22.754 Atomic orbital electron populations 1.21734 0.92887 1.02445 1.03032 1.21289 0.97263 0.94868 1.01669 1.21748 0.87244 1.00260 1.06775 1.21524 0.92109 0.81450 0.74812 1.90696 1.72097 1.32856 1.52732 1.49430 1.06491 1.07337 1.72434 1.22431 0.96775 0.78849 1.02842 1.22160 0.92519 0.96293 1.00216 0.89974 1.21294 0.98508 0.91662 1.01389 1.21492 0.92933 0.99738 1.00499 1.21797 0.98112 0.96489 1.00466 1.19757 0.84456 0.92222 0.95389 0.94760 1.42627 1.08902 1.71767 1.14292 1.19622 0.90240 1.31017 0.95717 0.90836 1.25523 1.01250 1.02424 0.97772 1.69820 1.28432 1.47883 1.16004 0.85139 0.79893 0.76701 0.78475 1.18947 1.22509 1.21929 1.21954 0.96810 0.92311 1.00751 0.90530 1.21255 0.80993 0.97475 0.99591 0.91342 0.91280 0.92434 0.93344 0.93402 0.86193 0.86064 0.88981 0.86567 0.91001 0.88084 0.90634 0.91905 0.93848 0.94304 0.79772 0.94198 0.94440 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.11 -2.17 5.22 30.59 0.16 -2.01 16 3 C -0.12 -2.07 4.73 29.84 0.14 -1.93 16 4 C 0.51 15.17 7.86 87.66 0.69 15.86 16 5 O -0.60 -24.92 16.32 -3.05 -0.05 -24.97 16 6 N -0.62 -17.43 3.38 -812.46 -2.75 -20.17 16 7 C 0.11 1.88 6.39 86.06 0.55 2.43 16 8 C -0.09 -1.89 2.48 -10.25 -0.03 -1.92 16 9 H 0.08 1.78 8.06 -2.39 -0.02 1.76 16 10 C -0.09 -1.46 5.75 30.41 0.17 -1.28 16 11 C -0.11 -2.33 5.84 30.71 0.18 -2.15 16 12 C -0.13 -4.21 5.40 30.07 0.16 -4.04 16 13 C 0.19 7.33 2.41 44.12 0.11 7.44 16 14 H 0.03 1.39 8.01 -2.39 -0.02 1.38 16 15 N -0.74 -37.68 5.06 -327.12 -1.66 -39.33 16 16 C -0.23 -13.26 9.95 84.03 0.84 -12.43 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 18 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 19 N -0.97 -61.34 13.06 21.65 0.28 -61.05 16 20 Si 0.97 47.66 29.55 68.60 2.03 49.69 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 23 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 24 C -0.10 -3.09 1.81 -10.62 -0.02 -3.11 16 25 H 0.08 2.43 7.97 -2.38 -0.02 2.41 16 26 C 0.13 4.77 6.51 85.82 0.56 5.33 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.12 1.38 7.89 -2.39 -0.02 1.36 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.12 1.10 7.55 -2.39 -0.02 1.09 16 36 H 0.07 1.14 8.00 -2.39 -0.02 1.12 16 37 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 40 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.37 20.65 7.81 -92.70 -0.72 19.93 16 43 H 0.25 15.31 8.31 -92.71 -0.77 14.53 16 44 H 0.04 1.60 8.08 -2.38 -0.02 1.58 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -76.85 353.73 2.77 -74.08 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.22 Total: 24.71 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 4.69 Total: -2.95 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -4.12 Total: -120.56 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -76.85 2.77 -74.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992584426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.324 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds