Wall clock time and date at job start Tue Mar 31 2020 02:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46565 * 2 1 4 4 C 1.50696 * 109.47238 * 119.99496 * 2 1 3 5 5 O 1.21279 * 120.00051 * 343.09685 * 4 2 1 6 6 N 1.34781 * 120.00137 * 163.09065 * 4 2 1 7 7 C 1.48237 * 125.78304 * 4.20586 * 6 4 2 8 8 C 1.52329 * 105.86666 * 176.83595 * 7 6 4 9 9 H 1.08998 * 110.24137 * 272.17799 * 8 7 6 10 10 C 1.51438 * 117.44987 * 145.32185 * 8 7 6 11 11 C 1.53852 * 107.03828 * 181.22129 * 10 8 7 12 12 C 1.52531 * 111.65517 * 57.19615 * 11 10 8 13 13 C 1.53810 * 111.70750 * 305.95766 * 12 11 10 14 14 H 1.08997 * 109.94408 * 176.99851 * 13 12 11 15 15 N 1.46496 * 109.94499 * 298.15876 * 13 12 11 16 16 C 1.36938 * 120.00179 * 218.08039 * 15 13 12 17 17 H 1.08003 * 119.99856 * 359.97438 * 16 15 13 18 18 C 1.38816 * 120.00001 * 180.02562 * 16 15 13 19 19 N 1.31611 * 120.00075 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99683 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47225 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47222 * 119.99819 * 20 18 16 23 23 H 1.48500 * 109.46743 * 239.99991 * 20 18 16 24 24 C 1.51621 * 107.02305 * 57.53661 * 13 12 11 25 25 H 1.08999 * 110.50471 * 55.20756 * 24 13 12 26 26 C 1.48652 * 125.78568 * 184.23577 * 6 4 2 27 27 H 1.08995 * 109.47175 * 299.99774 * 1 2 3 28 28 H 1.09006 * 109.46959 * 60.00488 * 1 2 3 29 29 H 1.09004 * 109.46349 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47175 * 240.00226 * 2 1 3 31 31 H 1.08997 * 109.47675 * 52.35540 * 3 2 1 32 32 H 1.09005 * 109.46610 * 172.35173 * 3 2 1 33 33 H 1.08998 * 109.47062 * 292.34719 * 3 2 1 34 34 H 1.09000 * 110.17328 * 57.73394 * 7 6 4 35 35 H 1.09004 * 110.17338 * 295.93569 * 7 6 4 36 36 H 1.09000 * 109.94425 * 300.60260 * 10 8 7 37 37 H 1.08999 * 109.94716 * 61.75556 * 10 8 7 38 38 H 1.08998 * 109.04532 * 177.75768 * 11 10 8 39 39 H 1.08995 * 109.03924 * 296.63885 * 11 10 8 40 40 H 1.09000 * 109.03135 * 66.53151 * 12 11 10 41 41 H 1.08993 * 109.02890 * 185.45798 * 12 11 10 42 42 H 0.97002 * 120.00196 * 38.08183 * 15 13 12 43 43 H 0.97001 * 120.00403 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.62899 * 37.10498 * 26 6 4 45 45 H 1.09004 * 110.75995 * 274.15584 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.2870 -0.8991 2.1684 6 7 3.3099 -1.1358 1.2886 7 6 4.3504 -0.8981 0.2599 8 6 5.6331 -1.5012 0.8177 9 1 6.1611 -0.7675 1.4267 10 6 6.5911 -2.1379 -0.1673 11 6 7.7740 -2.6900 0.6470 12 6 7.3114 -3.6792 1.7118 13 6 6.2283 -3.0725 2.6198 14 1 5.8813 -3.8189 3.3344 15 7 6.7665 -1.9112 3.3324 16 6 6.4092 -1.6806 4.6341 17 1 5.7301 -2.3546 5.1352 18 6 6.9188 -0.5798 5.3091 19 7 7.7458 0.2418 4.6983 20 14 6.4318 -0.2657 7.0849 21 1 5.4981 -1.3280 7.5375 22 1 7.6457 -0.2756 7.9403 23 1 5.7640 1.0567 7.1884 24 6 5.0849 -2.6435 1.7211 25 1 4.7400 -3.4816 1.1156 26 6 3.9142 -1.9237 2.3949 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.5692 1.9944 0.8137 32 1 3.1213 1.4457 0.1368 33 1 1.7926 1.9154 -0.9505 34 1 4.4786 0.1718 0.0952 35 1 4.0771 -1.3923 -0.6724 36 1 6.0938 -2.9499 -0.6978 37 1 6.9441 -1.3910 -0.8783 38 1 8.4669 -3.1922 -0.0281 39 1 8.2897 -1.8610 1.1317 40 1 6.9090 -4.5661 1.2222 41 1 8.1658 -3.9681 2.3237 42 1 7.3760 -1.3056 2.8822 43 1 8.1023 1.0107 5.1700 44 1 3.1971 -2.6432 2.7902 45 1 4.2724 -1.2659 3.1869 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992641464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:22 Heat of formation + Delta-G solvation = -37.663128 kcal Electronic energy + Delta-G solvation = -23634.949338 eV Core-core repulsion = 20458.793505 eV Total energy + Delta-G solvation = -3176.155832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.31304 -38.72662 -35.40410 -34.33570 -33.63444 -31.38900 -30.28103 -28.94553 -27.23092 -26.75615 -24.98911 -23.49892 -22.23479 -20.87125 -20.62153 -18.86086 -18.50670 -17.16304 -16.88873 -15.83861 -15.05151 -14.75453 -14.60350 -14.45263 -13.99872 -13.73874 -13.70454 -13.06411 -12.78190 -12.72220 -12.46147 -12.30422 -12.21103 -11.89745 -11.71912 -11.58111 -11.35353 -11.16778 -11.07205 -11.03268 -10.88371 -10.72235 -10.38676 -10.29052 -10.07639 -9.93248 -9.52730 -9.41259 -9.32026 -8.92085 -8.21782 -6.99578 -5.79702 -3.07578 2.94543 3.28983 3.43709 3.51157 3.51688 4.54867 4.59142 4.76476 4.87269 4.98606 5.05912 5.16796 5.32140 5.43973 5.52132 5.54648 5.56448 5.63140 5.68951 5.73686 5.78401 5.81926 5.82534 5.92287 5.97848 5.99819 6.06000 6.11160 6.18482 6.21717 6.25467 6.33947 6.39541 6.56108 6.64699 6.65529 6.76296 6.84990 6.88644 7.09007 7.70637 7.90336 8.39216 8.49620 9.51440 10.07581 10.42364 11.42681 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.006496 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.069170 B = 4309.492931 C = 5571.437434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.527 3.473 5 O -0.549 6.549 6 N -0.617 5.617 7 C 0.114 3.886 8 C -0.110 4.110 9 H 0.103 0.897 10 C -0.097 4.097 11 C -0.114 4.114 12 C -0.124 4.124 13 C 0.187 3.813 14 H 0.059 0.941 15 N -0.715 5.715 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.932 5.932 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.119 4.119 25 H 0.065 0.935 26 C 0.119 3.881 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.063 0.937 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 -2.913 -14.433 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.132 4.132 3 C -0.202 4.202 4 C 0.315 3.685 5 O -0.427 6.427 6 N -0.350 5.350 7 C -0.009 4.009 8 C -0.129 4.129 9 H 0.121 0.879 10 C -0.135 4.135 11 C -0.152 4.152 12 C -0.163 4.163 13 C 0.076 3.924 14 H 0.078 0.922 15 N -0.356 5.356 16 C -0.369 4.369 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.580 5.580 20 Si 0.733 3.267 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.141 4.141 25 H 0.083 0.917 26 C -0.002 4.002 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.450 -2.986 -13.731 15.462 hybrid contribution 0.047 0.479 0.765 0.904 sum -6.402 -2.506 -12.966 14.677 Atomic orbital electron populations 1.21618 0.92837 1.02378 1.02086 1.21243 0.97869 0.97451 0.96622 1.21788 1.01872 0.93993 1.02530 1.20282 0.80476 0.78814 0.88941 1.90673 1.55606 1.57531 1.38888 1.49248 1.09155 1.54295 1.22338 1.21748 0.88170 1.00113 0.90830 1.21884 0.94397 0.98868 0.97733 0.87932 1.21254 0.96202 0.99168 0.96896 1.21455 0.97016 0.99666 0.97047 1.21891 0.99790 0.97575 0.97061 1.19918 0.90300 0.90571 0.91628 0.92238 1.42465 1.54886 1.27052 1.11217 1.19308 1.22216 1.07003 0.88378 0.91095 1.24685 0.99866 0.97922 0.98152 1.69648 1.35595 1.16393 1.36371 0.86199 0.77556 0.77783 0.85202 1.20497 1.21941 1.21951 1.22805 0.96323 0.96508 0.98450 0.91652 1.22069 0.93515 0.94720 0.89874 0.91625 0.92283 0.92482 0.89368 0.91956 0.91786 0.91668 0.91514 0.92200 0.92423 0.92287 0.92920 0.91416 0.93040 0.91891 0.77980 0.93604 0.91893 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.62 37.16 0.32 -1.20 16 2 C -0.11 -1.37 2.65 -91.77 -0.24 -1.62 16 3 C -0.14 -1.62 9.14 37.16 0.34 -1.28 16 4 C 0.53 9.01 7.04 -10.99 -0.08 8.93 16 5 O -0.55 -11.53 16.33 5.56 0.09 -11.44 16 6 N -0.62 -10.36 3.38 -170.87 -0.58 -10.93 16 7 C 0.11 1.58 5.87 -3.43 -0.02 1.56 16 8 C -0.11 -1.67 2.22 -90.36 -0.20 -1.87 16 9 H 0.10 1.93 6.31 -51.93 -0.33 1.61 16 10 C -0.10 -1.24 5.71 -27.08 -0.15 -1.39 16 11 C -0.11 -1.60 5.55 -26.53 -0.15 -1.75 16 12 C -0.12 -1.90 5.54 -26.55 -0.15 -2.05 16 13 C 0.19 3.41 3.02 -68.21 -0.21 3.21 16 14 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 15 N -0.71 -16.26 3.87 -53.70 -0.21 -16.46 16 16 C -0.24 -6.23 8.81 -15.06 -0.13 -6.36 16 17 H 0.07 1.85 7.77 -52.48 -0.41 1.44 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 20 Si 0.90 22.34 29.55 -169.99 -5.02 17.32 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 C -0.12 -1.95 2.35 -89.90 -0.21 -2.16 16 25 H 0.07 0.98 8.01 -51.93 -0.42 0.57 16 26 C 0.12 2.24 6.49 -2.82 -0.02 2.23 16 27 H 0.06 0.85 7.92 -51.93 -0.41 0.43 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.93 7.80 -51.93 -0.40 0.52 16 31 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.88 6.26 -51.93 -0.33 0.55 16 35 H 0.06 0.70 7.99 -51.93 -0.41 0.28 16 36 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 1.10 7.08 -51.93 -0.37 0.73 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.38 9.31 5.60 -40.82 -0.23 9.08 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 45 H 0.10 2.20 6.70 -51.93 -0.35 1.85 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -30.24 340.99 -8.58 -38.82 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -7.73 Total: 8.06 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.99 Total: -4.13 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.06 Total: -53.77 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.24 -8.58 -38.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992641464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.157 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds