Wall clock time and date at job start Tue Mar 31 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46565 * 2 1 4 4 C 1.50696 * 109.47238 * 119.99496 * 2 1 3 5 5 O 1.21279 * 120.00051 * 343.09685 * 4 2 1 6 6 N 1.34781 * 120.00137 * 163.09065 * 4 2 1 7 7 C 1.48237 * 125.78304 * 4.20586 * 6 4 2 8 8 C 1.52329 * 105.86666 * 176.83595 * 7 6 4 9 9 H 1.08998 * 110.24137 * 272.17799 * 8 7 6 10 10 C 1.51438 * 117.44987 * 145.32185 * 8 7 6 11 11 C 1.53852 * 107.03828 * 181.22129 * 10 8 7 12 12 C 1.52531 * 111.65517 * 57.19615 * 11 10 8 13 13 C 1.53810 * 111.70750 * 305.95766 * 12 11 10 14 14 H 1.08997 * 109.94408 * 176.99851 * 13 12 11 15 15 N 1.46496 * 109.94499 * 298.15876 * 13 12 11 16 16 C 1.36938 * 120.00179 * 218.08039 * 15 13 12 17 17 H 1.08003 * 119.99856 * 359.97438 * 16 15 13 18 18 C 1.38816 * 120.00001 * 180.02562 * 16 15 13 19 19 N 1.31611 * 120.00075 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99683 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47225 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47222 * 119.99819 * 20 18 16 23 23 H 1.48500 * 109.46743 * 239.99991 * 20 18 16 24 24 C 1.51621 * 107.02305 * 57.53661 * 13 12 11 25 25 H 1.08999 * 110.50471 * 55.20756 * 24 13 12 26 26 C 1.48652 * 125.78568 * 184.23577 * 6 4 2 27 27 H 1.08995 * 109.47175 * 299.99774 * 1 2 3 28 28 H 1.09006 * 109.46959 * 60.00488 * 1 2 3 29 29 H 1.09004 * 109.46349 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47175 * 240.00226 * 2 1 3 31 31 H 1.08997 * 109.47675 * 52.35540 * 3 2 1 32 32 H 1.09005 * 109.46610 * 172.35173 * 3 2 1 33 33 H 1.08998 * 109.47062 * 292.34719 * 3 2 1 34 34 H 1.09000 * 110.17328 * 57.73394 * 7 6 4 35 35 H 1.09004 * 110.17338 * 295.93569 * 7 6 4 36 36 H 1.09000 * 109.94425 * 300.60260 * 10 8 7 37 37 H 1.08999 * 109.94716 * 61.75556 * 10 8 7 38 38 H 1.08998 * 109.04532 * 177.75768 * 11 10 8 39 39 H 1.08995 * 109.03924 * 296.63885 * 11 10 8 40 40 H 1.09000 * 109.03135 * 66.53151 * 12 11 10 41 41 H 1.08993 * 109.02890 * 185.45798 * 12 11 10 42 42 H 0.97002 * 120.00196 * 38.08183 * 15 13 12 43 43 H 0.97001 * 120.00403 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.62899 * 37.10498 * 26 6 4 45 45 H 1.09004 * 110.75995 * 274.15584 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.2870 -0.8991 2.1684 6 7 3.3099 -1.1358 1.2886 7 6 4.3504 -0.8981 0.2599 8 6 5.6331 -1.5012 0.8177 9 1 6.1611 -0.7675 1.4267 10 6 6.5911 -2.1379 -0.1673 11 6 7.7740 -2.6900 0.6470 12 6 7.3114 -3.6792 1.7118 13 6 6.2283 -3.0725 2.6198 14 1 5.8813 -3.8189 3.3344 15 7 6.7665 -1.9112 3.3324 16 6 6.4092 -1.6806 4.6341 17 1 5.7301 -2.3546 5.1352 18 6 6.9188 -0.5798 5.3091 19 7 7.7458 0.2418 4.6983 20 14 6.4318 -0.2657 7.0849 21 1 5.4981 -1.3280 7.5375 22 1 7.6457 -0.2756 7.9403 23 1 5.7640 1.0567 7.1884 24 6 5.0849 -2.6435 1.7211 25 1 4.7400 -3.4816 1.1156 26 6 3.9142 -1.9237 2.3949 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.5692 1.9944 0.8137 32 1 3.1213 1.4457 0.1368 33 1 1.7926 1.9154 -0.9505 34 1 4.4786 0.1718 0.0952 35 1 4.0771 -1.3923 -0.6724 36 1 6.0938 -2.9499 -0.6978 37 1 6.9441 -1.3910 -0.8783 38 1 8.4669 -3.1922 -0.0281 39 1 8.2897 -1.8610 1.1317 40 1 6.9090 -4.5661 1.2222 41 1 8.1658 -3.9681 2.3237 42 1 7.3760 -1.3056 2.8822 43 1 8.1023 1.0107 5.1700 44 1 3.1971 -2.6432 2.7902 45 1 4.2724 -1.2659 3.1869 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992641464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:21 Heat of formation + Delta-G solvation = -56.063623 kcal Electronic energy + Delta-G solvation = -23635.747243 eV Core-core repulsion = 20458.793505 eV Total energy + Delta-G solvation = -3176.953738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63745 -40.06520 -36.85349 -35.41912 -35.32819 -33.07930 -31.55295 -30.61064 -28.34395 -27.90538 -26.32605 -25.37046 -23.40020 -22.14436 -21.88984 -20.20844 -19.83354 -19.10740 -18.12024 -17.20430 -16.59973 -16.26170 -15.85891 -15.76431 -15.58916 -15.21064 -14.87377 -14.55005 -14.16507 -13.90331 -13.68413 -13.53792 -13.29575 -13.18514 -13.02749 -12.88348 -12.82928 -12.65023 -12.62917 -12.37617 -12.14396 -12.05832 -11.99301 -11.79979 -11.61922 -11.36545 -11.11038 -10.86932 -10.74250 -10.57124 -9.61397 -8.94948 -7.93680 -5.17352 1.41065 1.44008 1.51021 1.62994 2.01610 2.54701 3.37408 3.41032 3.61201 3.81150 3.88460 3.97632 4.05083 4.11977 4.28962 4.39741 4.42291 4.44610 4.52028 4.65015 4.65320 4.73196 4.74011 4.75407 4.81802 4.89334 4.91729 4.95266 5.01456 5.10452 5.12883 5.20259 5.25887 5.29104 5.35663 5.42585 5.45230 5.50530 5.56349 5.59804 5.76743 6.30408 6.61057 7.16498 7.38039 8.16346 8.39203 9.29684 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.006496 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.069170 B = 4309.492931 C = 5571.437434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.142 4.142 4 C 0.514 3.486 5 O -0.600 6.600 6 N -0.619 5.619 7 C 0.114 3.886 8 C -0.102 4.102 9 H 0.058 0.942 10 C -0.087 4.087 11 C -0.113 4.113 12 C -0.116 4.116 13 C 0.177 3.823 14 H 0.046 0.954 15 N -0.720 5.720 16 C -0.222 4.222 17 H 0.067 0.933 18 C -0.070 4.070 19 N -0.964 5.964 20 Si 0.952 3.048 21 H -0.273 1.273 22 H -0.292 1.292 23 H -0.302 1.302 24 C -0.109 4.109 25 H 0.096 0.904 26 C 0.120 3.880 27 H 0.041 0.959 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.121 0.879 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.035 0.965 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.377 0.623 43 H 0.248 0.752 44 H 0.049 0.951 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 -3.928 -18.086 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.122 4.122 3 C -0.199 4.199 4 C 0.305 3.695 5 O -0.482 6.482 6 N -0.351 5.351 7 C -0.007 4.007 8 C -0.121 4.121 9 H 0.076 0.924 10 C -0.125 4.125 11 C -0.150 4.150 12 C -0.155 4.155 13 C 0.068 3.932 14 H 0.065 0.935 15 N -0.361 5.361 16 C -0.354 4.354 17 H 0.085 0.915 18 C -0.262 4.262 19 N -0.616 5.616 20 Si 0.783 3.217 21 H -0.198 1.198 22 H -0.219 1.219 23 H -0.230 1.230 24 C -0.130 4.130 25 H 0.114 0.886 26 C -0.003 4.003 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.211 0.789 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.925 -4.042 -17.422 19.179 hybrid contribution 0.144 0.728 1.905 2.044 sum -6.781 -3.313 -15.518 17.255 Atomic orbital electron populations 1.21630 0.92243 1.02190 1.02656 1.21331 0.98281 0.97680 0.94929 1.21804 1.01136 0.93147 1.03820 1.21355 0.80024 0.78155 0.89982 1.90642 1.56963 1.59464 1.41144 1.49389 1.09841 1.53700 1.22208 1.21956 0.86356 1.01198 0.91170 1.21793 0.95204 0.97263 0.97817 0.92355 1.21239 0.94749 1.00297 0.96191 1.21449 0.98085 0.98446 0.97060 1.21792 0.98056 0.98854 0.96794 1.20193 0.92082 0.88800 0.92166 0.93537 1.42554 1.54815 1.28375 1.10346 1.19548 1.20243 1.05912 0.89728 0.91514 1.25264 1.01160 0.98618 1.01196 1.69764 1.37470 1.17022 1.37321 0.85375 0.77137 0.77110 0.82070 1.19767 1.21893 1.22969 1.22630 0.94463 0.97741 0.98170 0.88613 1.21791 0.94399 0.93997 0.90085 0.93933 0.88768 0.93107 0.86068 0.93749 0.92490 0.88069 0.90641 0.88037 0.89487 0.90265 0.90103 0.94599 0.89736 0.93405 0.78863 0.94323 0.93199 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.62 71.98 0.62 -2.09 16 2 C -0.10 -2.24 2.65 -11.54 -0.03 -2.27 16 3 C -0.14 -2.81 9.14 71.98 0.66 -2.15 16 4 C 0.51 17.34 7.04 87.66 0.62 17.96 16 5 O -0.60 -26.03 16.33 -3.03 -0.05 -26.08 16 6 N -0.62 -20.29 3.38 -812.90 -2.75 -23.04 16 7 C 0.11 2.82 5.87 85.82 0.50 3.32 16 8 C -0.10 -2.89 2.22 -10.63 -0.02 -2.91 16 9 H 0.06 2.22 6.31 -2.39 -0.02 2.21 16 10 C -0.09 -1.84 5.71 30.37 0.17 -1.67 16 11 C -0.11 -2.86 5.55 30.73 0.17 -2.69 16 12 C -0.12 -3.31 5.54 30.71 0.17 -3.14 16 13 C 0.18 6.42 3.02 44.81 0.14 6.56 16 14 H 0.05 1.78 7.94 -2.39 -0.02 1.77 16 15 N -0.72 -33.88 3.87 -323.80 -1.25 -35.14 16 16 C -0.22 -12.08 8.81 84.03 0.74 -11.34 16 17 H 0.07 3.62 7.77 -2.91 -0.02 3.59 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 19 N -0.96 -58.35 13.06 21.65 0.28 -58.07 16 20 Si 0.95 47.64 29.55 68.60 2.03 49.67 16 21 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 23 H -0.30 -15.43 7.11 99.48 0.71 -14.73 16 24 C -0.11 -3.42 2.35 -10.33 -0.02 -3.45 16 25 H 0.10 2.52 8.01 -2.39 -0.02 2.50 16 26 C 0.12 4.62 6.49 85.98 0.56 5.18 16 27 H 0.04 1.08 7.92 -2.39 -0.02 1.06 16 28 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.12 1.93 7.80 -2.39 -0.02 1.91 16 31 H 0.04 1.03 8.13 -2.39 -0.02 1.01 16 32 H 0.06 1.21 6.01 -2.38 -0.01 1.20 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.77 6.26 -2.39 -0.01 1.76 16 35 H 0.10 1.75 7.99 -2.38 -0.02 1.74 16 36 H 0.09 1.43 8.03 -2.39 -0.02 1.41 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.04 1.14 7.08 -2.39 -0.02 1.12 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.38 19.01 5.60 -92.71 -0.52 18.50 16 43 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 45 H 0.05 2.27 6.70 -2.38 -0.02 2.26 16 Total: -1.00 -71.23 340.99 3.44 -67.80 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.44 Total: 27.11 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 4.73 Total: -2.25 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -3.72 Total: -116.24 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -71.23 3.44 -67.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992641464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.734 kcal (2) G-P(sol) polarization free energy of solvation -71.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds