Wall clock time and date at job start Tue Mar 31 2020 02:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47594 * 2 1 4 4 H 1.08995 * 115.56348 * 29.31327 * 3 2 1 5 5 C 1.52999 * 117.50039 * 243.62554 * 3 2 1 6 6 C 1.53001 * 117.49948 * 175.00046 * 3 2 1 7 7 H 1.09002 * 117.49822 * 0.02562 * 6 3 2 8 8 C 1.50701 * 117.51956 * 214.96965 * 6 3 2 9 9 O 1.21289 * 119.99950 * 0.12336 * 8 6 3 10 10 N 1.34779 * 120.00184 * 180.11574 * 8 6 3 11 11 C 1.47424 * 125.64585 * 359.69807 * 10 8 6 12 12 C 1.55132 * 104.71862 * 155.81438 * 11 10 8 13 13 H 1.09001 * 110.90100 * 155.26986 * 12 11 10 14 14 N 1.46492 * 111.22664 * 279.17350 * 12 11 10 15 15 C 1.36935 * 120.00412 * 267.21174 * 14 12 11 16 16 H 1.08002 * 120.00042 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00758 * 179.97438 * 15 14 12 18 18 N 1.31627 * 119.99593 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00372 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47006 * 90.00142 * 19 17 15 21 21 H 1.48501 * 109.47010 * 209.99615 * 19 17 15 22 22 H 1.48491 * 109.47152 * 330.00176 * 19 17 15 23 23 C 1.55151 * 101.48598 * 37.29500 * 12 11 10 24 24 C 1.53002 * 110.72051 * 205.96613 * 23 12 11 25 25 C 1.53002 * 110.72196 * 82.69565 * 23 12 11 26 26 C 1.47024 * 125.64697 * 180.02562 * 10 8 6 27 27 H 1.09001 * 109.46846 * 300.00400 * 1 2 3 28 28 H 1.08998 * 109.46864 * 59.99513 * 1 2 3 29 29 H 1.08987 * 109.47534 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46846 * 239.99600 * 2 1 3 31 31 H 1.08998 * 109.46864 * 120.00487 * 2 1 3 32 32 H 1.09004 * 117.50150 * 145.02446 * 5 3 2 33 33 H 1.09004 * 117.51638 * 359.97438 * 5 3 2 34 34 H 1.09005 * 110.36418 * 274.74142 * 11 10 8 35 35 H 1.09001 * 110.36830 * 37.06456 * 11 10 8 36 36 H 0.97006 * 120.00073 * 87.20509 * 14 12 11 37 37 H 0.96997 * 119.99996 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.47191 * 174.97386 * 24 23 12 39 39 H 1.08998 * 109.47469 * 294.97668 * 24 23 12 40 40 H 1.09001 * 109.46668 * 54.97831 * 24 23 12 41 41 H 1.09000 * 109.47091 * 305.02119 * 25 23 12 42 42 H 1.08998 * 109.47128 * 65.02462 * 25 23 12 43 43 H 1.09005 * 109.47308 * 185.02482 * 25 23 12 44 44 H 1.09004 * 109.88112 * 300.44168 * 26 10 8 45 45 H 1.08998 * 109.88322 * 61.45208 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3886 2.1717 0.4814 5 6 2.8440 1.9075 -1.2159 6 6 3.5503 1.6577 0.1183 7 1 4.1804 0.7716 0.1957 8 6 4.0236 2.8618 0.8911 9 8 3.2169 3.6157 1.3931 10 7 5.3432 3.1008 1.0246 11 6 6.4274 2.2672 0.4741 12 6 7.6368 3.2298 0.3428 13 1 8.5770 2.6787 0.3686 14 7 7.5398 4.0407 -0.8733 15 6 8.1391 3.6162 -2.0290 16 1 8.6838 2.6837 -2.0439 17 6 8.0467 4.3842 -3.1816 18 7 7.3825 5.5204 -3.1637 19 14 8.8650 3.8054 -4.7579 20 1 7.9109 2.9732 -5.5341 21 1 9.2672 4.9831 -5.5681 22 1 10.0670 2.9998 -4.4247 23 6 7.4720 4.1078 1.6114 24 6 8.1109 5.4826 1.4049 25 6 8.0701 3.4096 2.8344 26 6 5.9400 4.2324 1.7491 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.7215 2.9427 -1.5343 33 1 3.0101 1.1859 -2.0158 34 1 6.6619 1.4505 1.1569 35 1 6.1462 1.8763 -0.5038 36 1 7.0508 4.8783 -0.8600 37 1 7.3175 6.0570 -3.9692 38 1 7.9066 6.1120 2.2710 39 1 9.1882 5.3684 1.2847 40 1 7.6929 5.9469 0.5117 41 1 7.6235 2.4212 2.9431 42 1 9.1476 3.3092 2.7048 43 1 7.8650 4.0010 3.7269 44 1 5.6038 5.1721 1.3107 45 1 5.6553 4.1912 2.8004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996323395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:37 Heat of formation + Delta-G solvation = -11.761798 kcal Electronic energy + Delta-G solvation = -22994.067996 eV Core-core repulsion = 19819.035329 eV Total energy + Delta-G solvation = -3175.032666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.06382 -38.46846 -36.54953 -33.85693 -33.18178 -31.99912 -30.73238 -28.00803 -26.78795 -26.61889 -24.09185 -23.79128 -23.01846 -21.43524 -20.40371 -18.86720 -18.45258 -17.23752 -16.66265 -15.82223 -15.21866 -14.80562 -14.53487 -14.45547 -14.03432 -13.79009 -13.60301 -13.02871 -12.90250 -12.64421 -12.46618 -12.28085 -12.12297 -11.90257 -11.87457 -11.51665 -11.41639 -11.33040 -11.02476 -11.00053 -10.92022 -10.53892 -10.45448 -10.25017 -10.13295 -9.91243 -9.89009 -9.65873 -9.41111 -9.01845 -8.16657 -7.03416 -5.83702 -3.13515 2.87149 3.35283 3.38615 3.44035 3.46008 4.02689 4.51019 4.61179 4.81788 4.91287 4.97379 5.11656 5.17863 5.22034 5.28298 5.32540 5.44673 5.45651 5.61748 5.71664 5.72732 5.79033 5.85371 5.87347 5.92029 6.00285 6.01300 6.08071 6.09290 6.16483 6.21362 6.21745 6.28269 6.36506 6.41562 6.43118 6.59069 6.69217 6.82978 6.95018 7.62894 7.99423 8.33785 8.59034 9.45658 10.01240 10.35980 11.38276 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.005749 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.088518 B = 4868.824320 C = 6399.040370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.124 4.124 4 H 0.115 0.885 5 C -0.142 4.142 6 C -0.180 4.180 7 H 0.119 0.881 8 C 0.558 3.442 9 O -0.558 6.558 10 N -0.598 5.598 11 C 0.069 3.931 12 C 0.179 3.821 13 H 0.073 0.927 14 N -0.707 5.707 15 C -0.246 4.246 16 H 0.072 0.928 17 C -0.007 4.007 18 N -0.928 5.928 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.281 1.281 23 C -0.090 4.090 24 C -0.126 4.126 25 C -0.131 4.131 26 C 0.123 3.877 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 -9.138 9.167 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.143 4.143 4 H 0.133 0.867 5 C -0.179 4.179 6 C -0.201 4.201 7 H 0.136 0.864 8 C 0.347 3.653 9 O -0.438 6.438 10 N -0.329 5.329 11 C -0.057 4.057 12 C 0.066 3.934 13 H 0.091 0.909 14 N -0.347 5.347 15 C -0.377 4.377 16 H 0.090 0.910 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.092 4.092 24 C -0.184 4.184 25 C -0.189 4.189 26 C 0.000 4.000 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.222 0.778 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.605 -8.797 9.253 13.944 hybrid contribution 0.381 -0.052 -0.988 1.061 sum -5.224 -8.850 8.265 13.188 Atomic orbital electron populations 1.21732 0.95384 1.01353 1.02113 1.21133 0.96043 0.93924 1.01978 1.22459 0.91670 0.98309 1.01821 0.86703 1.23063 1.01306 1.03348 0.90220 1.22184 0.96755 0.98861 1.02306 0.86352 1.19244 0.80729 0.85573 0.79802 1.90641 1.53454 1.49518 1.50137 1.48202 1.04823 1.26906 1.53013 1.23461 0.89626 0.94508 0.98126 1.21382 0.94689 0.90925 0.86419 0.90872 1.42360 1.63122 1.24006 1.05243 1.19224 1.26524 1.04170 0.87780 0.91044 1.24739 1.00682 0.96956 0.98024 1.69666 1.45762 1.13887 1.28241 0.86215 0.78943 0.77433 0.83707 1.21731 1.21793 1.20704 1.21932 0.93174 0.97622 0.96487 1.21634 1.00878 0.94392 1.01459 1.21755 1.00707 0.99953 0.96437 1.21963 0.92432 0.89913 0.95697 0.92616 0.92507 0.92823 0.91686 0.91664 0.88207 0.87926 0.92779 0.90173 0.77768 0.93398 0.93790 0.92303 0.90967 0.92803 0.92266 0.92841 0.91655 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.87 37.16 0.37 -1.00 16 2 C -0.09 -0.97 6.21 -26.73 -0.17 -1.14 16 3 C -0.12 -1.66 5.25 -90.62 -0.48 -2.13 16 4 H 0.11 1.70 7.60 -51.93 -0.39 1.31 16 5 C -0.14 -2.06 9.88 -26.73 -0.26 -2.32 16 6 C -0.18 -2.74 4.98 -91.77 -0.46 -3.19 16 7 H 0.12 1.59 7.77 -51.93 -0.40 1.19 16 8 C 0.56 10.41 7.63 -10.98 -0.08 10.33 16 9 O -0.56 -12.00 16.59 5.55 0.09 -11.90 16 10 N -0.60 -10.69 3.32 -170.37 -0.57 -11.26 16 11 C 0.07 1.16 5.87 -2.41 -0.01 1.15 16 12 C 0.18 3.27 2.96 -65.67 -0.19 3.07 16 13 H 0.07 1.31 7.99 -51.93 -0.41 0.89 16 14 N -0.71 -16.51 4.57 -51.24 -0.23 -16.74 16 15 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 19 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.09 -1.42 0.80 -152.68 -0.12 -1.55 16 24 C -0.13 -2.05 8.16 37.16 0.30 -1.74 16 25 C -0.13 -1.65 8.44 37.16 0.31 -1.34 16 26 C 0.12 2.11 6.03 -3.06 -0.02 2.09 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.42 8.14 -51.94 -0.42 0.00 16 30 H 0.06 0.63 7.88 -51.93 -0.41 0.22 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.10 1.31 8.03 -51.93 -0.42 0.89 16 34 H 0.05 0.77 7.70 -51.93 -0.40 0.37 16 35 H 0.08 1.47 7.66 -51.93 -0.40 1.07 16 36 H 0.39 9.91 6.32 -40.82 -0.26 9.65 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.40 6.34 -51.93 -0.33 1.07 16 41 H 0.05 0.65 7.42 -51.93 -0.39 0.27 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.25 7.82 -51.93 -0.41 0.84 16 45 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -30.21 359.76 -8.62 -38.83 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -7.97 Total: 10.14 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.06 Total: -4.61 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.08 Total: -54.47 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.21 -8.62 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996323395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.068 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds