Wall clock time and date at job start Tue Mar 31 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47594 * 2 1 4 4 H 1.08995 * 115.56348 * 29.31327 * 3 2 1 5 5 C 1.52999 * 117.50039 * 243.62554 * 3 2 1 6 6 C 1.53001 * 117.49948 * 175.00046 * 3 2 1 7 7 H 1.09002 * 117.49822 * 0.02562 * 6 3 2 8 8 C 1.50701 * 117.51956 * 214.96965 * 6 3 2 9 9 O 1.21289 * 119.99950 * 0.12336 * 8 6 3 10 10 N 1.34779 * 120.00184 * 180.11574 * 8 6 3 11 11 C 1.47424 * 125.64585 * 359.69807 * 10 8 6 12 12 C 1.55132 * 104.71862 * 155.81438 * 11 10 8 13 13 H 1.09001 * 110.90100 * 155.26986 * 12 11 10 14 14 N 1.46492 * 111.22664 * 279.17350 * 12 11 10 15 15 C 1.36935 * 120.00412 * 267.21174 * 14 12 11 16 16 H 1.08002 * 120.00042 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00758 * 179.97438 * 15 14 12 18 18 N 1.31627 * 119.99593 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00372 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47006 * 90.00142 * 19 17 15 21 21 H 1.48501 * 109.47010 * 209.99615 * 19 17 15 22 22 H 1.48491 * 109.47152 * 330.00176 * 19 17 15 23 23 C 1.55151 * 101.48598 * 37.29500 * 12 11 10 24 24 C 1.53002 * 110.72051 * 205.96613 * 23 12 11 25 25 C 1.53002 * 110.72196 * 82.69565 * 23 12 11 26 26 C 1.47024 * 125.64697 * 180.02562 * 10 8 6 27 27 H 1.09001 * 109.46846 * 300.00400 * 1 2 3 28 28 H 1.08998 * 109.46864 * 59.99513 * 1 2 3 29 29 H 1.08987 * 109.47534 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46846 * 239.99600 * 2 1 3 31 31 H 1.08998 * 109.46864 * 120.00487 * 2 1 3 32 32 H 1.09004 * 117.50150 * 145.02446 * 5 3 2 33 33 H 1.09004 * 117.51638 * 359.97438 * 5 3 2 34 34 H 1.09005 * 110.36418 * 274.74142 * 11 10 8 35 35 H 1.09001 * 110.36830 * 37.06456 * 11 10 8 36 36 H 0.97006 * 120.00073 * 87.20509 * 14 12 11 37 37 H 0.96997 * 119.99996 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.47191 * 174.97386 * 24 23 12 39 39 H 1.08998 * 109.47469 * 294.97668 * 24 23 12 40 40 H 1.09001 * 109.46668 * 54.97831 * 24 23 12 41 41 H 1.09000 * 109.47091 * 305.02119 * 25 23 12 42 42 H 1.08998 * 109.47128 * 65.02462 * 25 23 12 43 43 H 1.09005 * 109.47308 * 185.02482 * 25 23 12 44 44 H 1.09004 * 109.88112 * 300.44168 * 26 10 8 45 45 H 1.08998 * 109.88322 * 61.45208 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3886 2.1717 0.4814 5 6 2.8440 1.9075 -1.2159 6 6 3.5503 1.6577 0.1183 7 1 4.1804 0.7716 0.1957 8 6 4.0236 2.8618 0.8911 9 8 3.2169 3.6157 1.3931 10 7 5.3432 3.1008 1.0246 11 6 6.4274 2.2672 0.4741 12 6 7.6368 3.2298 0.3428 13 1 8.5770 2.6787 0.3686 14 7 7.5398 4.0407 -0.8733 15 6 8.1391 3.6162 -2.0290 16 1 8.6838 2.6837 -2.0439 17 6 8.0467 4.3842 -3.1816 18 7 7.3825 5.5204 -3.1637 19 14 8.8650 3.8054 -4.7579 20 1 7.9109 2.9732 -5.5341 21 1 9.2672 4.9831 -5.5681 22 1 10.0670 2.9998 -4.4247 23 6 7.4720 4.1078 1.6114 24 6 8.1109 5.4826 1.4049 25 6 8.0701 3.4096 2.8344 26 6 5.9400 4.2324 1.7491 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.7215 2.9427 -1.5343 33 1 3.0101 1.1859 -2.0158 34 1 6.6619 1.4505 1.1569 35 1 6.1462 1.8763 -0.5038 36 1 7.0508 4.8783 -0.8600 37 1 7.3175 6.0570 -3.9692 38 1 7.9066 6.1120 2.2710 39 1 9.1882 5.3684 1.2847 40 1 7.6929 5.9469 0.5117 41 1 7.6235 2.4212 2.9431 42 1 9.1476 3.3092 2.7048 43 1 7.8650 4.0010 3.7269 44 1 5.6038 5.1721 1.3107 45 1 5.6553 4.1912 2.8004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996323395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:36 Heat of formation + Delta-G solvation = -29.039494 kcal Electronic energy + Delta-G solvation = -22994.817213 eV Core-core repulsion = 19819.035329 eV Total energy + Delta-G solvation = -3175.781884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.46855 -39.80885 -37.83189 -35.68457 -34.60527 -32.88496 -32.57158 -29.51127 -28.10078 -27.96752 -25.75181 -24.87304 -24.32460 -22.93261 -21.42245 -20.32287 -19.80597 -19.07584 -18.06614 -17.34376 -16.61488 -16.45155 -15.78269 -15.69461 -15.36651 -15.20816 -14.92108 -14.55320 -14.31632 -13.96890 -13.64955 -13.41324 -13.29702 -13.21330 -13.01996 -12.95821 -12.81306 -12.76095 -12.63229 -12.21596 -12.13618 -12.05260 -11.94190 -11.82238 -11.46527 -11.32106 -11.23169 -11.08400 -10.90409 -10.77465 -9.66957 -8.94578 -7.91122 -5.19403 1.45443 1.49916 1.50238 1.58702 1.99998 2.58015 2.84583 3.35162 3.40256 3.64650 3.77265 3.82779 3.85585 3.87579 4.07182 4.11356 4.24729 4.34507 4.46185 4.47728 4.54900 4.60976 4.72037 4.74927 4.76789 4.88327 4.89373 4.90897 4.92468 5.02654 5.09880 5.12252 5.14353 5.20590 5.28875 5.31576 5.35942 5.44493 5.49381 5.54785 5.61696 6.29261 6.56358 7.13297 7.36526 8.11382 8.34236 9.32350 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.005749 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.088518 B = 4868.824320 C = 6399.040370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.107 4.107 4 H 0.095 0.905 5 C -0.148 4.148 6 C -0.188 4.188 7 H 0.143 0.857 8 C 0.545 3.455 9 O -0.597 6.597 10 N -0.601 5.601 11 C 0.078 3.922 12 C 0.167 3.833 13 H 0.087 0.913 14 N -0.720 5.720 15 C -0.233 4.233 16 H 0.085 0.915 17 C -0.073 4.073 18 N -0.972 5.972 19 Si 0.968 3.032 20 H -0.291 1.291 21 H -0.303 1.303 22 H -0.265 1.265 23 C -0.077 4.077 24 C -0.121 4.121 25 C -0.124 4.124 26 C 0.121 3.879 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.371 0.629 37 H 0.247 0.753 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.032 0.968 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 -12.112 10.355 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.126 4.126 4 H 0.113 0.887 5 C -0.186 4.186 6 C -0.209 4.209 7 H 0.160 0.840 8 C 0.336 3.664 9 O -0.479 6.479 10 N -0.331 5.331 11 C -0.047 4.047 12 C 0.056 3.944 13 H 0.105 0.895 14 N -0.358 5.358 15 C -0.365 4.365 16 H 0.102 0.898 17 C -0.265 4.265 18 N -0.622 5.622 19 Si 0.798 3.202 20 H -0.219 1.219 21 H -0.231 1.231 22 H -0.189 1.189 23 C -0.079 4.079 24 C -0.179 4.179 25 C -0.181 4.181 26 C -0.002 4.002 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.143 0.857 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.204 0.796 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.716 -11.833 10.480 16.495 hybrid contribution 0.109 0.895 -1.265 1.554 sum -4.607 -10.938 9.214 15.026 Atomic orbital electron populations 1.21738 0.94551 1.02484 1.01801 1.21165 0.96719 0.91528 1.03129 1.22505 0.90241 0.99876 0.99937 0.88725 1.23089 1.02072 1.02458 0.90951 1.22271 0.98356 0.98132 1.02112 0.83952 1.19933 0.80659 0.86251 0.79592 1.90611 1.54370 1.51106 1.51826 1.48348 1.05030 1.27053 1.52714 1.23385 0.88133 0.94698 0.98489 1.21693 0.95793 0.91310 0.85554 0.89539 1.42532 1.62796 1.24118 1.06403 1.19667 1.24659 1.03729 0.88404 0.89754 1.25486 1.02388 0.97455 1.01194 1.69842 1.48444 1.15558 1.28391 0.85218 0.78444 0.76502 0.80064 1.21853 1.23061 1.18921 1.21891 0.92069 0.97105 0.96825 1.21563 1.00633 0.95085 1.00603 1.21720 1.01241 1.00256 0.94905 1.22013 0.93535 0.88607 0.96056 0.93081 0.92787 0.90938 0.90319 0.90611 0.91051 0.85702 0.88779 0.91615 0.79590 0.94397 0.91545 0.92077 0.94912 0.91674 0.91004 0.91261 0.94804 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.87 71.98 0.71 -1.71 16 2 C -0.09 -1.61 6.21 30.59 0.19 -1.42 16 3 C -0.11 -2.77 5.25 -10.79 -0.06 -2.82 16 4 H 0.09 2.86 7.60 -2.39 -0.02 2.84 16 5 C -0.15 -4.26 9.88 30.60 0.30 -3.96 16 6 C -0.19 -5.53 4.98 -11.54 -0.06 -5.59 16 7 H 0.14 3.45 7.77 -2.39 -0.02 3.43 16 8 C 0.55 20.43 7.63 87.66 0.67 21.10 16 9 O -0.60 -26.41 16.59 -3.06 -0.05 -26.46 16 10 N -0.60 -21.11 3.32 -811.32 -2.70 -23.80 16 11 C 0.08 2.46 5.87 86.93 0.51 2.97 16 12 C 0.17 5.84 2.96 46.46 0.14 5.98 16 13 H 0.09 2.83 7.99 -2.39 -0.02 2.81 16 14 N -0.72 -33.81 4.57 -316.03 -1.44 -35.26 16 15 C -0.23 -12.03 9.96 84.03 0.84 -11.20 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 17 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 18 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 19 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 23 C -0.08 -2.31 0.80 -50.99 -0.04 -2.35 16 24 C -0.12 -3.88 8.16 71.98 0.59 -3.30 16 25 C -0.12 -2.66 8.44 71.98 0.61 -2.05 16 26 C 0.12 4.11 6.03 86.73 0.52 4.63 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.26 7.88 -2.39 -0.02 1.24 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.12 2.99 8.03 -2.38 -0.02 2.97 16 34 H 0.09 2.28 7.70 -2.38 -0.02 2.26 16 35 H 0.07 2.29 7.66 -2.39 -0.02 2.27 16 36 H 0.37 19.76 6.32 -92.70 -0.59 19.18 16 37 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.03 1.30 6.34 -2.39 -0.02 1.29 16 41 H 0.06 1.28 7.42 -2.39 -0.02 1.26 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.03 1.35 7.82 -2.39 -0.02 1.33 16 45 H 0.07 2.24 7.85 -2.39 -0.02 2.23 16 Total: -1.00 -67.83 359.76 3.87 -63.97 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.37 Total: 36.69 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 5.39 Total: -3.29 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -3.86 Total: -117.71 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.83 3.87 -63.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996323395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.926 kcal (2) G-P(sol) polarization free energy of solvation -67.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds