Wall clock time and date at job start Tue Mar 31 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47417 * 2 1 4 4 H 1.09003 * 115.55986 * 29.30575 * 3 2 1 5 5 C 1.52999 * 117.49570 * 243.62481 * 3 2 1 6 6 C 1.52991 * 117.50017 * 175.00162 * 3 2 1 7 7 H 1.09004 * 117.51879 * 0.02562 * 6 3 2 8 8 C 1.50701 * 117.49800 * 214.97793 * 6 3 2 9 9 O 1.21275 * 120.00224 * 359.97438 * 8 6 3 10 10 N 1.34780 * 119.99768 * 179.97438 * 8 6 3 11 11 C 1.47420 * 125.65180 * 0.04091 * 10 8 6 12 12 C 1.54907 * 104.83524 * 204.09058 * 11 10 8 13 13 H 1.08994 * 111.00852 * 204.88001 * 12 11 10 14 14 N 1.46499 * 111.00010 * 81.06591 * 12 11 10 15 15 C 1.36932 * 120.00202 * 86.45754 * 14 12 11 16 16 H 1.08004 * 119.99987 * 359.97438 * 15 14 12 17 17 C 1.38815 * 120.00489 * 179.97438 * 15 14 12 18 18 N 1.31614 * 120.00337 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99658 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46918 * 90.00180 * 19 17 15 21 21 H 1.48499 * 109.47142 * 209.99909 * 19 17 15 22 22 H 1.48494 * 109.47433 * 330.00489 * 19 17 15 23 23 C 1.55155 * 101.58383 * 322.99460 * 12 11 10 24 24 C 1.53005 * 110.71798 * 277.13858 * 23 12 11 25 25 C 1.52994 * 110.72348 * 153.86012 * 23 12 11 26 26 C 1.47026 * 125.64391 * 180.02562 * 10 8 6 27 27 H 1.09002 * 109.47215 * 59.99660 * 1 2 3 28 28 H 1.08997 * 109.47484 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47165 * 300.00523 * 1 2 3 30 30 H 1.08999 * 109.46779 * 239.99592 * 2 1 3 31 31 H 1.08999 * 109.46764 * 120.00106 * 2 1 3 32 32 H 1.08999 * 117.49867 * 145.02309 * 5 3 2 33 33 H 1.08999 * 117.49993 * 359.97438 * 5 3 2 34 34 H 1.08997 * 110.36858 * 322.93289 * 11 10 8 35 35 H 1.08997 * 110.36396 * 85.14276 * 11 10 8 36 36 H 0.97002 * 120.00181 * 266.44704 * 14 12 11 37 37 H 0.97006 * 120.00096 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.47047 * 174.97305 * 24 23 12 39 39 H 1.09000 * 109.46907 * 294.97347 * 24 23 12 40 40 H 1.09001 * 109.47302 * 54.97422 * 24 23 12 41 41 H 1.08994 * 109.47458 * 305.02375 * 25 23 12 42 42 H 1.09010 * 109.46817 * 65.02757 * 25 23 12 43 43 H 1.09000 * 109.47214 * 185.01736 * 25 23 12 44 44 H 1.08998 * 109.88351 * 298.39161 * 26 10 8 45 45 H 1.08998 * 109.88379 * 59.55951 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8440 1.9074 -1.2159 6 6 3.5501 1.6578 0.1182 7 1 4.1806 0.7720 0.1956 8 6 4.0229 2.8619 0.8913 9 8 3.2159 3.6168 1.3910 10 7 5.3425 3.0998 1.0275 11 6 6.4270 2.2688 0.4738 12 6 7.6516 2.5624 1.3759 13 1 8.5836 2.3730 0.8433 14 7 7.5902 1.7826 2.6146 15 6 8.0944 0.5100 2.6483 16 1 8.5369 0.0808 1.7615 17 6 8.0367 -0.2287 3.8222 18 7 8.5208 -1.4522 3.8544 19 14 7.2718 0.5138 5.3562 20 1 5.8193 0.2059 5.3838 21 1 7.9225 -0.0604 6.5613 22 1 7.4656 1.9860 5.3430 23 6 7.4717 4.0766 1.6624 24 6 8.0342 4.9155 0.5131 25 6 8.1329 4.4590 2.9880 26 6 5.9388 4.2313 1.7525 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.7214 2.9426 -1.5344 33 1 3.0098 1.1855 -2.0156 34 1 6.1610 1.2131 0.5271 35 1 6.6357 2.5550 -0.5570 36 1 7.1925 2.1680 3.4111 37 1 8.4808 -1.9682 4.6748 38 1 7.8181 5.9687 0.6925 39 1 9.1128 4.7711 0.4520 40 1 7.5723 4.6043 -0.4239 41 1 7.7402 3.8281 3.7853 42 1 9.2110 4.3178 2.9103 43 1 7.9187 5.5039 3.2127 44 1 5.6334 5.1700 1.2905 45 1 5.6246 4.2099 2.7961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996323397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:41 Heat of formation + Delta-G solvation = -7.178465 kcal Electronic energy + Delta-G solvation = -23087.777870 eV Core-core repulsion = 19912.943952 eV Total energy + Delta-G solvation = -3174.833918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.20975 -38.62298 -36.64916 -33.99096 -33.31605 -32.02173 -31.10004 -28.35802 -26.93907 -26.84566 -24.11380 -23.75190 -23.04085 -21.33627 -20.46636 -19.12377 -18.60011 -17.61998 -16.82567 -15.89231 -15.44037 -14.82645 -14.53284 -14.43870 -14.36863 -13.87111 -13.60465 -13.20333 -12.93063 -12.62933 -12.51624 -12.45391 -12.20773 -12.15573 -11.98578 -11.76117 -11.58203 -11.35871 -11.32910 -11.04703 -10.99861 -10.62862 -10.56142 -10.29841 -10.22660 -9.98597 -9.96078 -9.63017 -9.52669 -9.07067 -8.29166 -7.35126 -5.85885 -3.22087 2.75130 3.25813 3.31852 3.36419 3.41782 3.90064 4.50720 4.51971 4.70322 4.82052 4.85695 4.97315 5.00855 5.14011 5.24277 5.28928 5.31953 5.43242 5.44981 5.55164 5.61910 5.66178 5.74134 5.78862 5.82895 5.90360 5.92909 5.96996 6.03865 6.05054 6.08191 6.10379 6.13968 6.22601 6.24329 6.37623 6.44257 6.54996 6.66396 6.70148 7.86436 7.89083 8.33133 8.47689 9.10630 9.83536 10.02475 11.31846 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.006277 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.970461 B = 4459.464916 C = 5793.065062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.119 4.119 4 H 0.115 0.885 5 C -0.149 4.149 6 C -0.182 4.182 7 H 0.127 0.873 8 C 0.558 3.442 9 O -0.558 6.558 10 N -0.600 5.600 11 C 0.072 3.928 12 C 0.183 3.817 13 H 0.079 0.921 14 N -0.735 5.735 15 C -0.249 4.249 16 H 0.093 0.907 17 C 0.012 3.988 18 N -0.929 5.929 19 Si 0.878 3.122 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.091 4.091 24 C -0.131 4.131 25 C -0.130 4.130 26 C 0.121 3.879 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.364 0.636 37 H 0.260 0.740 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 8.871 -10.029 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.138 4.138 4 H 0.133 0.867 5 C -0.187 4.187 6 C -0.203 4.203 7 H 0.145 0.855 8 C 0.347 3.653 9 O -0.437 6.437 10 N -0.332 5.332 11 C -0.054 4.054 12 C 0.072 3.928 13 H 0.097 0.903 14 N -0.378 5.378 15 C -0.378 4.378 16 H 0.110 0.890 17 C -0.185 4.185 18 N -0.576 5.576 19 Si 0.708 3.292 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.092 4.092 24 C -0.188 4.188 25 C -0.188 4.188 26 C -0.002 4.002 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.198 0.802 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.130 9.007 -9.792 15.592 hybrid contribution -0.421 0.301 1.241 1.344 sum -8.551 9.307 -8.551 15.260 Atomic orbital electron populations 1.21730 0.95375 1.01490 1.01911 1.21161 0.96023 0.93763 1.02439 1.22441 0.91774 0.98563 1.00975 0.86691 1.23055 1.02464 1.02705 0.90450 1.22284 0.97342 0.99271 1.01428 0.85546 1.19257 0.80657 0.85405 0.79968 1.90640 1.53424 1.49445 1.50193 1.48257 1.04950 1.27034 1.52970 1.23356 0.88989 0.96074 0.96967 1.21328 0.95205 0.87986 0.88316 0.90286 1.42749 1.72260 1.14865 1.07880 1.19030 1.32196 0.88325 0.98270 0.88966 1.24622 1.00531 0.95927 0.97381 1.69686 1.50826 1.09642 1.27466 0.86675 0.79464 0.78639 0.84410 1.21048 1.21580 1.20292 1.21920 0.93314 0.97168 0.96833 1.21744 1.01031 0.98841 0.97200 1.21689 1.01111 1.00112 0.95872 1.21980 0.92339 0.89088 0.96790 0.92700 0.92693 0.92608 0.91619 0.91176 0.88652 0.87953 0.89803 0.92229 0.80160 0.92948 0.92696 0.92020 0.92527 0.91918 0.91770 0.93256 0.92008 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.87 37.16 0.37 -1.05 16 2 C -0.10 -1.07 6.21 -26.73 -0.17 -1.24 16 3 C -0.12 -1.55 5.25 -90.63 -0.48 -2.02 16 4 H 0.12 1.65 7.60 -51.93 -0.39 1.26 16 5 C -0.15 -1.75 9.88 -26.73 -0.26 -2.02 16 6 C -0.18 -2.69 5.25 -91.78 -0.48 -3.17 16 7 H 0.13 1.87 7.07 -51.93 -0.37 1.50 16 8 C 0.56 9.98 7.63 -10.98 -0.08 9.90 16 9 O -0.56 -11.51 16.58 5.56 0.09 -11.42 16 10 N -0.60 -10.21 3.33 -170.52 -0.57 -10.78 16 11 C 0.07 1.16 6.06 -2.53 -0.02 1.15 16 12 C 0.18 3.20 2.93 -65.78 -0.19 3.01 16 13 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 14 N -0.74 -16.27 4.52 -51.35 -0.23 -16.50 16 15 C -0.25 -6.58 10.47 -15.06 -0.16 -6.74 16 16 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 17 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 18 N -0.93 -28.26 13.97 55.49 0.78 -27.48 16 19 Si 0.88 21.93 27.73 -169.99 -4.71 17.21 16 20 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 23 C -0.09 -1.33 0.81 -152.67 -0.12 -1.46 16 24 C -0.13 -1.52 8.44 37.16 0.31 -1.21 16 25 C -0.13 -1.93 8.16 37.15 0.30 -1.63 16 26 C 0.12 1.94 6.04 -3.06 -0.02 1.92 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.10 0.99 8.03 -51.93 -0.42 0.58 16 34 H 0.08 1.49 7.00 -51.93 -0.36 1.13 16 35 H 0.06 0.82 7.72 -51.93 -0.40 0.41 16 36 H 0.36 8.26 3.88 -40.82 -0.16 8.10 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 41 H 0.06 1.09 6.21 -51.93 -0.32 0.77 16 42 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.93 7.84 -51.93 -0.41 0.52 16 45 H 0.06 1.10 7.82 -51.93 -0.41 0.70 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -31.26 355.54 -8.23 -39.49 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -7.85 Total: 8.42 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.09 Total: -4.31 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.02 Total: -54.76 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.26 -8.23 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996323397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.310 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds