Wall clock time and date at job start Tue Mar 31 2020 02:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47417 * 2 1 4 4 H 1.09003 * 115.55986 * 29.30575 * 3 2 1 5 5 C 1.52999 * 117.49570 * 243.62481 * 3 2 1 6 6 C 1.52991 * 117.50017 * 175.00162 * 3 2 1 7 7 H 1.09004 * 117.51879 * 0.02562 * 6 3 2 8 8 C 1.50701 * 117.49800 * 214.97793 * 6 3 2 9 9 O 1.21275 * 120.00224 * 359.97438 * 8 6 3 10 10 N 1.34780 * 119.99768 * 179.97438 * 8 6 3 11 11 C 1.47420 * 125.65180 * 0.04091 * 10 8 6 12 12 C 1.54907 * 104.83524 * 204.09058 * 11 10 8 13 13 H 1.08994 * 111.00852 * 204.88001 * 12 11 10 14 14 N 1.46499 * 111.00010 * 81.06591 * 12 11 10 15 15 C 1.36932 * 120.00202 * 86.45754 * 14 12 11 16 16 H 1.08004 * 119.99987 * 359.97438 * 15 14 12 17 17 C 1.38815 * 120.00489 * 179.97438 * 15 14 12 18 18 N 1.31614 * 120.00337 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99658 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46918 * 90.00180 * 19 17 15 21 21 H 1.48499 * 109.47142 * 209.99909 * 19 17 15 22 22 H 1.48494 * 109.47433 * 330.00489 * 19 17 15 23 23 C 1.55155 * 101.58383 * 322.99460 * 12 11 10 24 24 C 1.53005 * 110.71798 * 277.13858 * 23 12 11 25 25 C 1.52994 * 110.72348 * 153.86012 * 23 12 11 26 26 C 1.47026 * 125.64391 * 180.02562 * 10 8 6 27 27 H 1.09002 * 109.47215 * 59.99660 * 1 2 3 28 28 H 1.08997 * 109.47484 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47165 * 300.00523 * 1 2 3 30 30 H 1.08999 * 109.46779 * 239.99592 * 2 1 3 31 31 H 1.08999 * 109.46764 * 120.00106 * 2 1 3 32 32 H 1.08999 * 117.49867 * 145.02309 * 5 3 2 33 33 H 1.08999 * 117.49993 * 359.97438 * 5 3 2 34 34 H 1.08997 * 110.36858 * 322.93289 * 11 10 8 35 35 H 1.08997 * 110.36396 * 85.14276 * 11 10 8 36 36 H 0.97002 * 120.00181 * 266.44704 * 14 12 11 37 37 H 0.97006 * 120.00096 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.47047 * 174.97305 * 24 23 12 39 39 H 1.09000 * 109.46907 * 294.97347 * 24 23 12 40 40 H 1.09001 * 109.47302 * 54.97422 * 24 23 12 41 41 H 1.08994 * 109.47458 * 305.02375 * 25 23 12 42 42 H 1.09010 * 109.46817 * 65.02757 * 25 23 12 43 43 H 1.09000 * 109.47214 * 185.01736 * 25 23 12 44 44 H 1.08998 * 109.88351 * 298.39161 * 26 10 8 45 45 H 1.08998 * 109.88379 * 59.55951 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8440 1.9074 -1.2159 6 6 3.5501 1.6578 0.1182 7 1 4.1806 0.7720 0.1956 8 6 4.0229 2.8619 0.8913 9 8 3.2159 3.6168 1.3910 10 7 5.3425 3.0998 1.0275 11 6 6.4270 2.2688 0.4738 12 6 7.6516 2.5624 1.3759 13 1 8.5836 2.3730 0.8433 14 7 7.5902 1.7826 2.6146 15 6 8.0944 0.5100 2.6483 16 1 8.5369 0.0808 1.7615 17 6 8.0367 -0.2287 3.8222 18 7 8.5208 -1.4522 3.8544 19 14 7.2718 0.5138 5.3562 20 1 5.8193 0.2059 5.3838 21 1 7.9225 -0.0604 6.5613 22 1 7.4656 1.9860 5.3430 23 6 7.4717 4.0766 1.6624 24 6 8.0342 4.9155 0.5131 25 6 8.1329 4.4590 2.9880 26 6 5.9388 4.2313 1.7525 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.7214 2.9426 -1.5344 33 1 3.0098 1.1855 -2.0156 34 1 6.1610 1.2131 0.5271 35 1 6.6357 2.5550 -0.5570 36 1 7.1925 2.1680 3.4111 37 1 8.4808 -1.9682 4.6748 38 1 7.8181 5.9687 0.6925 39 1 9.1128 4.7711 0.4520 40 1 7.5723 4.6043 -0.4239 41 1 7.7402 3.8281 3.7853 42 1 9.2110 4.3178 2.9103 43 1 7.9187 5.5039 3.2127 44 1 5.6334 5.1700 1.2905 45 1 5.6246 4.2099 2.7961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996323397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:40 Heat of formation + Delta-G solvation = -25.649043 kcal Electronic energy + Delta-G solvation = -23088.578815 eV Core-core repulsion = 19912.943952 eV Total energy + Delta-G solvation = -3175.634863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53461 -39.88819 -37.85186 -35.81233 -34.66545 -33.05551 -32.89773 -29.81060 -28.12985 -28.07595 -25.61601 -24.87089 -24.27594 -22.85156 -21.44925 -20.62213 -19.90785 -19.38631 -18.12754 -17.33323 -16.80518 -16.42014 -16.10687 -15.52076 -15.45490 -15.21145 -14.95448 -14.59223 -14.44195 -14.02868 -13.81568 -13.64095 -13.39784 -13.26245 -13.16900 -12.99615 -12.94637 -12.84795 -12.68853 -12.23938 -12.20697 -11.96846 -11.95011 -11.87216 -11.60280 -11.34210 -11.28124 -11.12118 -10.97555 -10.79587 -9.75472 -9.24608 -8.04100 -5.35169 1.30386 1.33931 1.38706 1.43485 1.98175 2.43504 2.81361 3.25860 3.29829 3.51746 3.62858 3.74257 3.76848 3.84514 3.96439 4.15144 4.23701 4.27226 4.39381 4.45069 4.52540 4.55826 4.66014 4.72921 4.73403 4.84532 4.85420 4.88172 4.92545 5.02248 5.04276 5.08500 5.13014 5.19503 5.25072 5.25977 5.31172 5.39922 5.46416 5.50237 5.78286 6.20920 6.50752 7.05969 7.10511 7.82871 7.99783 9.17008 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.006277 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.970461 B = 4459.464916 C = 5793.065062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.121 4.121 4 H 0.097 0.903 5 C -0.119 4.119 6 C -0.204 4.204 7 H 0.123 0.877 8 C 0.549 3.451 9 O -0.593 6.593 10 N -0.603 5.603 11 C 0.081 3.919 12 C 0.170 3.830 13 H 0.087 0.913 14 N -0.740 5.740 15 C -0.217 4.217 16 H 0.072 0.928 17 C -0.052 4.052 18 N -0.977 5.977 19 Si 0.931 3.069 20 H -0.293 1.293 21 H -0.294 1.294 22 H -0.256 1.256 23 C -0.077 4.077 24 C -0.125 4.125 25 C -0.130 4.130 26 C 0.117 3.883 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.362 0.638 37 H 0.256 0.744 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 10.634 -11.906 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C -0.140 4.140 4 H 0.115 0.885 5 C -0.157 4.157 6 C -0.225 4.225 7 H 0.141 0.859 8 C 0.339 3.661 9 O -0.476 6.476 10 N -0.334 5.334 11 C -0.044 4.044 12 C 0.060 3.940 13 H 0.104 0.896 14 N -0.383 5.383 15 C -0.348 4.348 16 H 0.090 0.910 17 C -0.244 4.244 18 N -0.628 5.628 19 Si 0.761 3.239 20 H -0.221 1.221 21 H -0.221 1.221 22 H -0.180 1.180 23 C -0.078 4.078 24 C -0.182 4.182 25 C -0.187 4.187 26 C -0.006 4.006 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.149 0.851 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.196 0.804 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.425 10.827 -11.707 18.035 hybrid contribution -0.322 -0.191 1.732 1.772 sum -8.746 10.637 -9.975 17.004 Atomic orbital electron populations 1.21715 0.94167 1.02336 1.02041 1.21175 0.97079 0.92431 1.02492 1.22484 0.90335 0.99340 1.01807 0.88473 1.23180 0.99212 1.03568 0.89704 1.22264 0.98395 0.97962 1.03891 0.85888 1.19825 0.80611 0.85858 0.79767 1.90612 1.54241 1.50929 1.51778 1.48384 1.05009 1.27242 1.52770 1.23247 0.87753 0.95035 0.98326 1.21646 0.96001 0.89597 0.86735 0.89566 1.42794 1.71972 1.13781 1.09705 1.19045 1.29340 0.89521 0.96911 0.90977 1.25218 1.02445 0.96487 1.00242 1.69823 1.53762 1.11286 1.27943 0.85786 0.77792 0.79143 0.81229 1.22066 1.22111 1.18046 1.21891 0.92396 0.95294 0.98246 1.21724 1.01519 0.99149 0.95804 1.21685 1.01042 1.01092 0.94929 1.22090 0.93248 0.89536 0.95698 0.91607 0.91484 0.93478 0.89940 0.92736 0.88422 0.85111 0.91736 0.88707 0.80431 0.93499 0.90875 0.90976 0.91751 0.94850 0.91471 0.90717 0.90513 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.87 71.98 0.71 -1.86 16 2 C -0.09 -1.98 6.21 30.59 0.19 -1.79 16 3 C -0.12 -3.03 5.25 -10.80 -0.06 -3.09 16 4 H 0.10 2.80 7.60 -2.39 -0.02 2.78 16 5 C -0.12 -2.51 9.88 30.59 0.30 -2.21 16 6 C -0.20 -5.84 5.25 -11.54 -0.06 -5.90 16 7 H 0.12 3.58 7.07 -2.38 -0.02 3.57 16 8 C 0.55 19.38 7.63 87.66 0.67 20.05 16 9 O -0.59 -24.59 16.58 -3.01 -0.05 -24.64 16 10 N -0.60 -19.78 3.33 -811.80 -2.70 -22.48 16 11 C 0.08 2.48 6.06 86.86 0.53 3.01 16 12 C 0.17 5.64 2.93 46.38 0.14 5.78 16 13 H 0.09 2.79 8.03 -2.39 -0.02 2.77 16 14 N -0.74 -32.33 4.52 -316.39 -1.43 -33.76 16 15 C -0.22 -11.57 10.47 84.04 0.88 -10.69 16 16 H 0.07 4.10 8.06 -2.91 -0.02 4.07 16 17 C -0.05 -2.98 5.50 84.86 0.47 -2.51 16 18 N -0.98 -61.04 13.97 21.65 0.30 -60.73 16 19 Si 0.93 46.04 27.73 68.60 1.90 47.95 16 20 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 21 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 22 H -0.26 -11.56 6.52 99.48 0.65 -10.91 16 23 C -0.08 -2.06 0.81 -50.99 -0.04 -2.10 16 24 C -0.12 -2.39 8.44 71.98 0.61 -1.79 16 25 C -0.13 -3.56 8.16 71.98 0.59 -2.98 16 26 C 0.12 3.56 6.04 86.73 0.52 4.08 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.08 1.45 7.87 -2.39 -0.02 1.43 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.13 2.02 8.03 -2.39 -0.02 2.01 16 34 H 0.06 2.25 7.00 -2.39 -0.02 2.23 16 35 H 0.09 2.28 7.72 -2.39 -0.02 2.26 16 36 H 0.36 16.21 3.88 -92.71 -0.36 15.85 16 37 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.16 7.45 -2.39 -0.02 1.14 16 41 H 0.03 1.11 6.21 -2.39 -0.01 1.09 16 42 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 2.11 7.84 -2.39 -0.02 2.09 16 45 H 0.04 1.43 7.82 -2.39 -0.02 1.41 16 Total: -1.00 -69.29 355.54 4.00 -65.29 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.54 Total: 30.40 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 5.44 Total: -2.01 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -3.83 Total: -116.97 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.95 kcal Total: -69.29 4.00 -65.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996323397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.637 kcal (2) G-P(sol) polarization free energy of solvation -69.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds